Wall clock time and date at job start Sun Mar 29 2020 21:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47157 * 2 1 4 4 C 1.52996 * 109.47210 * 239.99775 * 2 1 3 5 5 C 1.52999 * 109.47210 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47187 * 180.02562 * 5 4 2 7 7 C 1.52995 * 109.47234 * 300.00256 * 5 4 2 8 8 C 1.52998 * 109.46961 * 60.00097 * 5 4 2 9 9 C 1.53001 * 109.47370 * 300.00133 * 8 5 4 10 10 C 1.52998 * 109.47001 * 59.99664 * 9 8 5 11 11 H 1.08995 * 109.46881 * 179.97438 * 10 9 8 12 12 N 1.46510 * 109.46746 * 60.00411 * 10 9 8 13 13 C 1.36935 * 119.99776 * 85.00193 * 12 10 9 14 14 H 1.07997 * 120.00259 * 359.97438 * 13 12 10 15 15 C 1.38813 * 119.99472 * 179.97438 * 13 12 10 16 16 N 1.31618 * 120.00240 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99684 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46845 * 90.00337 * 17 15 13 19 19 H 1.48503 * 109.47399 * 209.99827 * 17 15 13 20 20 H 1.48498 * 109.47295 * 330.00433 * 17 15 13 21 21 H 1.09000 * 109.47488 * 299.99915 * 1 2 3 22 22 H 1.08997 * 109.47112 * 60.00214 * 1 2 3 23 23 H 1.09007 * 109.47185 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47244 * 300.00171 * 4 2 1 25 25 H 1.09006 * 109.47188 * 60.00197 * 4 2 1 26 26 H 1.08997 * 109.47364 * 59.99824 * 6 5 4 27 27 H 1.09001 * 109.47203 * 180.02562 * 6 5 4 28 28 H 1.09003 * 109.46601 * 299.99724 * 6 5 4 29 29 H 1.09002 * 109.47571 * 59.99553 * 7 5 4 30 30 H 1.09005 * 109.47509 * 179.97438 * 7 5 4 31 31 H 1.09006 * 109.46985 * 299.99693 * 7 5 4 32 32 H 1.08998 * 109.47081 * 60.00082 * 8 5 4 33 33 H 1.09002 * 109.46827 * 179.97438 * 8 5 4 34 34 H 1.09003 * 109.46601 * 300.00282 * 9 8 5 35 35 H 1.08997 * 109.47364 * 180.02562 * 9 8 5 36 36 H 0.96998 * 119.99423 * 264.99340 * 12 10 9 37 37 H 0.97000 * 119.99789 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7218 -1.2489 6 6 4.0800 -1.4426 -2.4984 7 6 4.0805 0.7204 -1.2485 8 6 4.0794 -1.4434 0.0004 9 6 3.5694 -0.7222 1.2497 10 6 2.0394 -0.7216 1.2493 11 1 1.6761 -0.2082 2.1394 12 7 1.5506 -2.1027 1.2490 13 6 1.4192 -2.7827 2.4303 14 1 1.6764 -2.3011 3.3621 15 6 0.9556 -4.0912 2.4299 16 7 0.6418 -4.6779 1.2944 17 14 0.7771 -5.0191 4.0413 18 1 -0.5849 -4.7992 4.5908 19 1 0.9863 -6.4699 3.8030 20 1 1.7877 -4.5259 5.0111 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.6767 -1.7489 -1.2492 25 1 1.6767 -0.2074 -2.1392 26 1 3.7171 -0.9282 -3.3882 27 1 5.1700 -1.4434 -2.4979 28 1 3.7163 -2.4701 -2.4989 29 1 3.7172 1.2344 -0.3586 30 1 5.1706 0.7201 -1.2478 31 1 3.7176 1.2345 -2.1386 32 1 3.7157 -2.4709 0.0002 33 1 5.1694 -1.4442 0.0004 34 1 3.9331 0.3054 1.2498 35 1 3.9327 -1.2360 2.1396 36 1 1.3199 -2.5353 0.4120 37 1 0.7341 -4.1959 0.4577 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307188701.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:05 Heat of formation + Delta-G solvation = -20.061003 kcal Electronic energy + Delta-G solvation = -15305.324878 eV Core-core repulsion = 13081.567953 eV Total energy + Delta-G solvation = -2223.756925 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.45649 -34.89404 -32.79135 -31.31781 -28.89830 -27.07313 -26.20765 -25.15501 -23.29376 -21.25095 -19.60246 -17.79109 -17.03568 -15.21203 -14.59059 -14.29377 -14.11123 -13.59022 -13.50009 -13.18754 -12.56987 -12.27856 -12.04450 -11.61388 -11.45489 -11.36233 -11.21739 -10.85162 -10.66134 -10.56704 -10.55724 -10.21233 -10.00288 -9.64470 -9.57232 -9.36541 -9.02647 -8.76894 -6.90020 -6.01542 -2.99015 3.55183 3.59992 3.73820 4.73739 5.04036 5.10050 5.15505 5.46315 5.63219 5.66011 5.72854 5.81661 5.86919 5.89091 5.96705 6.00442 6.04914 6.12889 6.16747 6.25242 6.33399 6.37247 6.41727 6.45169 6.55205 6.63037 6.71638 6.85147 6.95634 6.96966 7.11921 7.15085 7.91034 8.84520 9.34206 10.20536 10.37548 11.47068 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038435 B = 0.009587 C = 0.009130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.331357 B = 2920.019978 C = 3066.058580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.097 4.097 3 H 0.064 0.936 4 C -0.098 4.098 5 C -0.064 4.064 6 C -0.140 4.140 7 C -0.140 4.140 8 C -0.097 4.097 9 C -0.135 4.135 10 C 0.186 3.814 11 H 0.043 0.957 12 N -0.729 5.729 13 C -0.322 4.322 14 H 0.062 0.938 15 C -0.048 4.048 16 N -0.948 5.948 17 Si 1.080 2.920 18 H -0.297 1.297 19 H -0.289 1.289 20 H -0.296 1.296 21 H 0.047 0.953 22 H 0.039 0.961 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.050 0.950 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.043 0.957 34 H 0.044 0.956 35 H 0.056 0.944 36 H 0.367 0.633 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.091 9.858 -5.119 12.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.116 4.116 3 H 0.082 0.918 4 C -0.135 4.135 5 C -0.064 4.064 6 C -0.197 4.197 7 C -0.198 4.198 8 C -0.135 4.135 9 C -0.175 4.175 10 C 0.076 3.924 11 H 0.061 0.939 12 N -0.372 5.372 13 C -0.453 4.453 14 H 0.080 0.920 15 C -0.246 4.246 16 N -0.594 5.594 17 Si 0.912 3.088 18 H -0.225 1.225 19 H -0.216 1.216 20 H -0.223 1.223 21 H 0.067 0.933 22 H 0.058 0.942 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.202 0.798 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.685 8.490 -4.210 10.571 hybrid contribution 0.464 1.337 -0.860 1.656 sum 5.149 9.827 -5.070 12.198 Atomic orbital electron populations 1.21725 0.95490 1.02510 0.99868 1.21407 0.95521 0.98718 0.95982 0.91797 1.21559 0.94081 1.01006 0.96898 1.20509 0.95486 0.95050 0.95310 1.21855 1.00339 1.00487 0.97011 1.21944 1.00118 0.96289 1.01404 1.21417 0.98225 1.00436 0.93409 1.22164 0.99454 0.98216 0.97645 1.20142 0.91076 0.86734 0.94473 0.93904 1.42458 1.78872 1.09809 1.06101 1.20075 1.40994 0.97636 0.86594 0.92014 1.25656 0.99923 0.94515 1.04466 1.70846 1.51907 1.39150 0.97507 0.83225 0.75703 0.76079 0.73838 1.22529 1.21555 1.22323 0.93337 0.94188 0.91773 0.91704 0.93099 0.93284 0.93204 0.92641 0.92022 0.93422 0.93496 0.91094 0.93785 0.93692 0.92477 0.79841 0.93507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.03 37.16 0.34 -2.05 16 2 C -0.10 -1.65 2.24 -90.62 -0.20 -1.86 16 3 H 0.06 0.98 6.43 -51.93 -0.33 0.65 16 4 C -0.10 -1.59 3.84 -26.73 -0.10 -1.70 16 5 C -0.06 -0.96 0.77 -154.51 -0.12 -1.08 16 6 C -0.14 -1.93 8.47 37.16 0.31 -1.61 16 7 C -0.14 -1.85 7.78 37.16 0.29 -1.56 16 8 C -0.10 -1.71 4.57 -26.73 -0.12 -1.84 16 9 C -0.13 -2.50 5.34 -26.73 -0.14 -2.64 16 10 C 0.19 3.76 2.54 -67.93 -0.17 3.59 16 11 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 12 N -0.73 -17.94 3.58 -53.42 -0.19 -18.13 16 13 C -0.32 -9.02 9.93 -15.06 -0.15 -9.17 16 14 H 0.06 1.73 7.83 -52.49 -0.41 1.32 16 15 C -0.05 -1.42 5.50 -17.43 -0.10 -1.51 16 16 N -0.95 -29.43 13.70 55.49 0.76 -28.67 16 17 Si 1.08 26.41 29.92 -169.99 -5.09 21.33 16 18 H -0.30 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 20 H -0.30 -6.87 7.11 56.52 0.40 -6.47 16 21 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.06 1.28 7.44 -51.93 -0.39 0.89 16 24 H 0.06 1.21 6.50 -51.93 -0.34 0.88 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.82 4.81 -51.93 -0.25 0.58 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 1.48 7.60 -51.93 -0.39 1.09 16 33 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.04 0.73 6.43 -51.93 -0.33 0.40 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.37 9.36 4.68 -40.82 -0.19 9.17 16 37 H 0.25 7.77 6.77 -40.82 -0.28 7.49 16 LS Contribution 276.53 15.07 4.17 4.17 Total: -1.00 -29.82 276.53 -6.88 -36.69 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -6.36 Total: 6.03 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: -0.17 Total: -21.41 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: 0.57 Total: -46.80 kcal Atomic # 14 Polarization: 26.41 SS G_CDS: -5.09 Total: 21.33 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.82 -6.88 -36.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307188701.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.630 kcal (2) G-P(sol) polarization free energy of solvation -29.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds