Wall clock time and date at job start Sun Mar 29 2020 21:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47157 * 2 1 4 4 C 1.52996 * 109.47210 * 239.99775 * 2 1 3 5 5 C 1.52999 * 109.47210 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47187 * 180.02562 * 5 4 2 7 7 C 1.52995 * 109.47234 * 300.00256 * 5 4 2 8 8 C 1.52998 * 109.46961 * 60.00097 * 5 4 2 9 9 C 1.53001 * 109.47370 * 300.00133 * 8 5 4 10 10 C 1.52998 * 109.47001 * 59.99664 * 9 8 5 11 11 H 1.08995 * 109.46881 * 179.97438 * 10 9 8 12 12 N 1.46510 * 109.46746 * 60.00411 * 10 9 8 13 13 C 1.36935 * 119.99776 * 85.00193 * 12 10 9 14 14 H 1.07997 * 120.00259 * 359.97438 * 13 12 10 15 15 C 1.38813 * 119.99472 * 179.97438 * 13 12 10 16 16 N 1.31618 * 120.00240 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99684 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46845 * 90.00337 * 17 15 13 19 19 H 1.48503 * 109.47399 * 209.99827 * 17 15 13 20 20 H 1.48498 * 109.47295 * 330.00433 * 17 15 13 21 21 H 1.09000 * 109.47488 * 299.99915 * 1 2 3 22 22 H 1.08997 * 109.47112 * 60.00214 * 1 2 3 23 23 H 1.09007 * 109.47185 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47244 * 300.00171 * 4 2 1 25 25 H 1.09006 * 109.47188 * 60.00197 * 4 2 1 26 26 H 1.08997 * 109.47364 * 59.99824 * 6 5 4 27 27 H 1.09001 * 109.47203 * 180.02562 * 6 5 4 28 28 H 1.09003 * 109.46601 * 299.99724 * 6 5 4 29 29 H 1.09002 * 109.47571 * 59.99553 * 7 5 4 30 30 H 1.09005 * 109.47509 * 179.97438 * 7 5 4 31 31 H 1.09006 * 109.46985 * 299.99693 * 7 5 4 32 32 H 1.08998 * 109.47081 * 60.00082 * 8 5 4 33 33 H 1.09002 * 109.46827 * 179.97438 * 8 5 4 34 34 H 1.09003 * 109.46601 * 300.00282 * 9 8 5 35 35 H 1.08997 * 109.47364 * 180.02562 * 9 8 5 36 36 H 0.96998 * 119.99423 * 264.99340 * 12 10 9 37 37 H 0.97000 * 119.99789 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7218 -1.2489 6 6 4.0800 -1.4426 -2.4984 7 6 4.0805 0.7204 -1.2485 8 6 4.0794 -1.4434 0.0004 9 6 3.5694 -0.7222 1.2497 10 6 2.0394 -0.7216 1.2493 11 1 1.6761 -0.2082 2.1394 12 7 1.5506 -2.1027 1.2490 13 6 1.4192 -2.7827 2.4303 14 1 1.6764 -2.3011 3.3621 15 6 0.9556 -4.0912 2.4299 16 7 0.6418 -4.6779 1.2944 17 14 0.7771 -5.0191 4.0413 18 1 -0.5849 -4.7992 4.5908 19 1 0.9863 -6.4699 3.8030 20 1 1.7877 -4.5259 5.0111 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.6767 -1.7489 -1.2492 25 1 1.6767 -0.2074 -2.1392 26 1 3.7171 -0.9282 -3.3882 27 1 5.1700 -1.4434 -2.4979 28 1 3.7163 -2.4701 -2.4989 29 1 3.7172 1.2344 -0.3586 30 1 5.1706 0.7201 -1.2478 31 1 3.7176 1.2345 -2.1386 32 1 3.7157 -2.4709 0.0002 33 1 5.1694 -1.4442 0.0004 34 1 3.9331 0.3054 1.2498 35 1 3.9327 -1.2360 2.1396 36 1 1.3199 -2.5353 0.4120 37 1 0.7341 -4.1959 0.4577 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307188701.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:04 Heat of formation + Delta-G solvation = -36.870457 kcal Electronic energy + Delta-G solvation = -15306.053791 eV Core-core repulsion = 13081.567953 eV Total energy + Delta-G solvation = -2224.485838 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.87583 -36.59694 -34.53074 -32.91706 -30.75055 -28.14262 -27.51325 -26.75724 -25.36629 -22.73566 -21.01499 -19.60118 -18.74927 -17.00506 -15.92725 -15.90467 -15.62058 -15.45284 -14.84103 -14.64345 -14.26339 -13.64058 -13.25695 -13.07908 -12.78321 -12.75170 -12.63879 -12.58283 -12.30204 -12.08688 -11.95253 -11.89384 -11.65813 -11.26187 -11.12684 -10.96289 -10.73191 -10.67934 -8.99575 -8.33479 -5.23422 1.55813 1.66706 1.80473 2.72791 3.44519 3.72353 3.79304 3.85999 3.99364 4.19415 4.33282 4.44267 4.49321 4.61480 4.65444 4.71057 4.77904 4.84958 4.90369 5.00098 5.01306 5.10907 5.13854 5.16747 5.23650 5.24949 5.29752 5.43578 5.51494 5.56151 5.63347 5.67682 5.75744 6.55191 7.18535 8.11329 8.23158 9.18698 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038435 B = 0.009587 C = 0.009130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.331357 B = 2920.019978 C = 3066.058580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 H 0.095 0.905 4 C -0.095 4.095 5 C -0.060 4.060 6 C -0.137 4.137 7 C -0.136 4.136 8 C -0.093 4.093 9 C -0.128 4.128 10 C 0.176 3.824 11 H 0.029 0.971 12 N -0.736 5.736 13 C -0.317 4.317 14 H 0.059 0.941 15 C -0.110 4.110 16 N -0.979 5.979 17 Si 1.126 2.874 18 H -0.287 1.287 19 H -0.295 1.295 20 H -0.276 1.276 21 H 0.047 0.953 22 H 0.069 0.931 23 H 0.026 0.974 24 H 0.029 0.971 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.033 0.967 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.026 0.974 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.028 0.972 36 H 0.360 0.640 37 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.009 12.044 -5.610 14.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.108 4.108 3 H 0.113 0.887 4 C -0.133 4.133 5 C -0.060 4.060 6 C -0.195 4.195 7 C -0.192 4.192 8 C -0.131 4.131 9 C -0.168 4.168 10 C 0.068 3.932 11 H 0.047 0.953 12 N -0.380 5.380 13 C -0.449 4.449 14 H 0.077 0.923 15 C -0.300 4.300 16 N -0.628 5.628 17 Si 0.952 3.048 18 H -0.214 1.214 19 H -0.222 1.222 20 H -0.202 1.202 21 H 0.066 0.934 22 H 0.088 0.912 23 H 0.045 0.955 24 H 0.048 0.952 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.045 0.955 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.047 0.953 36 H 0.194 0.806 37 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 5.623 10.732 -4.700 12.995 hybrid contribution 0.201 0.729 -0.715 1.041 sum 5.823 11.461 -5.415 13.950 Atomic orbital electron populations 1.21684 0.95754 1.00473 1.01312 1.21371 0.95264 0.99772 0.94406 0.88660 1.21539 0.95135 0.99109 0.97483 1.20492 0.94481 0.96699 0.94371 1.21832 1.01148 0.99351 0.97125 1.21897 1.00948 0.94056 1.02343 1.21358 0.99010 0.98162 0.94559 1.22057 0.97826 0.99927 0.96958 1.20414 0.92253 0.84647 0.95892 0.95253 1.42597 1.79110 1.11456 1.04793 1.20375 1.39025 0.97800 0.87677 0.92257 1.27014 1.00433 0.96062 1.06539 1.70955 1.54523 1.39566 0.97776 0.82623 0.76596 0.74563 0.71006 1.21384 1.22167 1.20171 0.93406 0.91219 0.95487 0.95215 0.90600 0.91263 0.91914 0.94736 0.92067 0.92199 0.91526 0.95540 0.92286 0.90317 0.95284 0.80627 0.94822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.50 9.03 71.98 0.65 -3.84 16 2 C -0.09 -2.88 2.24 -10.80 -0.02 -2.90 16 3 H 0.10 2.54 6.43 -2.39 -0.02 2.53 16 4 C -0.10 -2.95 3.84 30.59 0.12 -2.83 16 5 C -0.06 -1.69 0.77 -52.18 -0.04 -1.73 16 6 C -0.14 -3.49 8.47 71.98 0.61 -2.88 16 7 C -0.14 -2.94 7.78 71.98 0.56 -2.38 16 8 C -0.09 -3.23 4.57 30.59 0.14 -3.09 16 9 C -0.13 -4.64 5.34 30.59 0.16 -4.47 16 10 C 0.18 7.12 2.54 44.99 0.11 7.23 16 11 H 0.03 1.26 8.08 -2.39 -0.02 1.24 16 12 N -0.74 -37.46 3.58 -322.94 -1.16 -38.62 16 13 C -0.32 -18.22 9.93 84.03 0.83 -17.38 16 14 H 0.06 3.37 7.83 -2.91 -0.02 3.35 16 15 C -0.11 -6.55 5.50 84.86 0.47 -6.08 16 16 N -0.98 -62.92 13.70 21.65 0.30 -62.62 16 17 Si 1.13 53.97 29.92 68.60 2.05 56.03 16 18 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 19 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 20 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 21 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 22 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 23 H 0.03 1.08 7.44 -2.38 -0.02 1.06 16 24 H 0.03 1.13 6.50 -2.39 -0.02 1.11 16 25 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 26 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 1.34 4.81 -2.39 -0.01 1.32 16 30 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.03 1.13 7.60 -2.39 -0.02 1.12 16 33 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.08 2.33 6.43 -2.39 -0.02 2.32 16 35 H 0.03 1.18 8.14 -2.39 -0.02 1.17 16 36 H 0.36 19.33 4.68 -92.71 -0.43 18.89 16 37 H 0.24 15.55 6.77 -92.71 -0.63 14.92 16 Total: -1.00 -66.17 276.53 5.51 -60.66 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: 0.73 Total: 24.93 kcal Atomic # 6 Polarization: -43.96 SS G_CDS: 3.59 Total: -40.37 kcal Atomic # 7 Polarization: -100.38 SS G_CDS: -0.86 Total: -101.24 kcal Atomic # 14 Polarization: 53.97 SS G_CDS: 2.05 Total: 56.03 kcal Total: -66.17 5.51 -60.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307188701.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.787 kcal (2) G-P(sol) polarization free energy of solvation -66.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds