Wall clock time and date at job start Sun Mar 29 2020 21:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29506 * 121.53023 * 2 1 4 4 S 1.69481 * 107.85831 * 179.97438 * 3 2 1 5 5 C 1.72019 * 96.03664 * 359.97438 * 4 3 2 6 6 C 1.37964 * 105.36125 * 0.02562 * 5 4 3 7 7 C 1.47263 * 123.09880 * 179.97438 * 6 5 4 8 8 O 1.21635 * 120.00266 * 180.02562 * 7 6 5 9 9 N 1.34783 * 119.99972 * 0.02562 * 7 6 5 10 10 C 1.36973 * 120.00359 * 179.97438 * 9 7 6 11 11 H 1.08004 * 120.00276 * 0.02562 * 10 9 7 12 12 C 1.38972 * 120.00291 * 180.02562 * 10 9 7 13 13 N 1.31416 * 120.00193 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00250 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47072 * 59.99771 * 14 12 10 16 16 H 1.48497 * 109.47721 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47252 * 299.99843 * 14 12 10 18 18 H 1.08998 * 109.47383 * 90.02646 * 1 2 3 19 19 H 1.09007 * 109.47305 * 210.02812 * 1 2 3 20 20 H 1.09001 * 109.47052 * 330.02538 * 1 2 3 21 21 H 1.07993 * 127.32358 * 179.73807 * 5 4 3 22 22 H 0.97008 * 119.99779 * 0.02562 * 9 7 6 23 23 H 0.96992 * 120.00320 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1842 1.1039 0.0000 4 16 3.8310 0.7033 0.0007 5 6 3.6025 -1.0017 0.0018 6 6 2.2353 -1.1871 0.0010 7 6 1.6043 -2.5177 0.0009 8 8 0.3919 -2.6159 -0.0003 9 7 2.3702 -3.6268 0.0023 10 6 1.7833 -4.8644 0.0028 11 1 0.7068 -4.9517 0.0016 12 6 2.5731 -6.0080 0.0047 13 7 3.8829 -5.9020 0.0055 14 14 1.7727 -7.6958 0.0046 15 1 0.9298 -7.8439 -1.2090 16 1 2.8256 -8.7430 0.0062 17 1 0.9263 -7.8424 1.2160 18 1 -0.3634 -0.0005 -1.0276 19 1 -0.3634 -0.8898 0.5143 20 1 -0.3633 0.8902 0.5134 21 1 4.3666 -1.7647 -0.0014 22 1 3.3371 -3.5485 0.0036 23 1 4.4341 -6.7001 0.0065 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307203687.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:08 Heat of formation + Delta-G solvation = -23.154784 kcal Electronic energy + Delta-G solvation = -11620.262446 eV Core-core repulsion = 9366.199041 eV Total energy + Delta-G solvation = -2254.063405 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.036 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.99533 -38.86826 -36.08731 -33.70675 -32.21782 -30.40627 -27.27669 -25.08403 -22.25373 -20.46507 -20.13888 -18.55142 -17.81191 -16.66593 -16.16730 -15.73971 -15.37580 -14.84776 -14.64128 -14.21594 -13.58856 -13.28569 -13.16239 -12.93960 -12.46432 -12.29627 -12.12113 -11.69236 -11.57285 -10.70445 -10.32037 -10.11124 -9.58220 -8.54747 -5.98997 -0.52820 0.44773 0.77442 0.88746 1.43992 1.47348 1.54597 2.27317 2.39210 3.10103 3.24890 3.59143 4.05494 4.35698 4.44256 4.51533 4.73966 4.79909 5.26178 5.36759 5.66980 5.96046 6.50194 7.03052 7.42920 7.99011 8.62106 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.053308 B = 0.008448 C = 0.007321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.128010 B = 3313.789176 C = 3823.772951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.153 3.847 3 N -0.496 5.496 4 S 0.323 5.677 5 C -0.180 4.180 6 C -0.210 4.210 7 C 0.494 3.506 8 O -0.616 6.616 9 N -0.549 5.549 10 C -0.332 4.332 11 H 0.089 0.911 12 C -0.009 4.009 13 N -0.911 5.911 14 Si 0.998 3.002 15 H -0.270 1.270 16 H -0.270 1.270 17 H -0.269 1.269 18 H 0.083 0.917 19 H 0.091 0.909 20 H 0.086 0.914 21 H 0.204 0.796 22 H 0.397 0.603 23 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.556 7.595 0.027 8.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.025 4.025 3 N -0.318 5.318 4 S 0.478 5.522 5 C -0.330 4.330 6 C -0.230 4.230 7 C 0.280 3.720 8 O -0.505 6.505 9 N -0.184 5.184 10 C -0.462 4.462 11 H 0.107 0.893 12 C -0.210 4.210 13 N -0.551 5.551 14 Si 0.820 3.180 15 H -0.195 1.195 16 H -0.194 1.194 17 H -0.195 1.195 18 H 0.101 0.899 19 H 0.110 0.890 20 H 0.105 0.895 21 H 0.221 0.779 22 H 0.232 0.768 23 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.829 9.438 0.025 9.853 hybrid contribution -0.478 -2.526 -0.032 2.571 sum 2.351 6.912 -0.008 7.301 Atomic orbital electron populations 1.20804 0.85351 1.04563 1.04124 1.21499 1.00082 0.86697 0.94204 1.76246 1.01977 1.26341 1.27265 1.83414 1.08713 0.94474 1.65579 1.27615 0.98945 1.05494 1.00943 1.20518 0.93187 0.95824 1.13506 1.17396 0.86671 0.83533 0.84360 1.90504 1.14617 1.86755 1.58615 1.41805 1.09202 1.04744 1.62603 1.19786 0.93903 0.82791 1.49695 0.89307 1.26139 0.95831 1.03386 0.95653 1.69644 1.04430 1.32479 1.48500 0.84914 0.77845 0.76020 0.79176 1.19479 1.19443 1.19451 0.89857 0.89021 0.89504 0.77904 0.76830 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.96 9.51 71.24 0.68 -2.29 14 2 C 0.15 5.59 6.75 43.15 0.29 5.88 14 3 N -0.50 -16.52 11.97 -51.05 -0.61 -17.13 14 4 S 0.32 8.68 23.69 -56.49 -1.34 7.34 14 5 C -0.18 -5.69 10.79 67.75 0.73 -4.95 14 6 C -0.21 -8.24 5.86 -20.72 -0.12 -8.37 14 7 C 0.49 23.96 7.73 86.61 0.67 24.63 14 8 O -0.62 -33.01 13.32 -4.14 -0.06 -33.07 14 9 N -0.55 -27.74 5.25 -310.11 -1.63 -29.37 14 10 C -0.33 -18.17 9.68 84.07 0.81 -17.35 14 11 H 0.09 5.10 7.15 -2.91 -0.02 5.08 14 12 C -0.01 -0.45 5.50 84.93 0.47 0.02 14 13 N -0.91 -46.87 13.05 21.67 0.28 -46.59 14 14 Si 1.00 40.89 29.55 68.60 2.03 42.91 14 15 H -0.27 -10.93 7.11 99.48 0.71 -10.23 14 16 H -0.27 -10.42 7.11 99.48 0.71 -9.72 14 17 H -0.27 -10.91 7.11 99.48 0.71 -10.21 14 18 H 0.08 2.69 8.14 -2.39 -0.02 2.67 14 19 H 0.09 3.61 5.63 -2.38 -0.01 3.59 14 20 H 0.09 2.47 8.14 -2.39 -0.02 2.45 14 21 H 0.20 5.64 7.20 -2.91 -0.02 5.62 14 22 H 0.40 18.77 6.47 -92.70 -0.60 18.17 14 23 H 0.28 13.55 8.31 -92.71 -0.77 12.78 14 Total: -1.00 -60.99 225.03 2.86 -58.12 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.66 Total: 20.21 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 3.53 Total: -2.43 kcal Atomic # 7 Polarization: -91.13 SS G_CDS: -1.96 Total: -93.09 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -0.06 Total: -33.07 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.91 kcal Atomic # 16 Polarization: 8.68 SS G_CDS: -1.34 Total: 7.34 kcal Total: -60.99 2.86 -58.12 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307203687.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.970 kcal (2) G-P(sol) polarization free energy of solvation -60.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds