Wall clock time and date at job start Sun Mar 29 2020 21:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47114 * 2 1 4 4 C 1.36934 * 120.00010 * 95.55093 * 3 2 1 5 5 H 1.08000 * 119.99881 * 213.26686 * 4 3 2 6 6 C 1.38811 * 119.99931 * 33.26900 * 4 3 2 7 7 N 1.31620 * 120.00304 * 21.83734 * 6 4 3 8 8 Si 1.86801 * 119.99838 * 201.83474 * 6 4 3 9 9 H 1.48509 * 109.47169 * 60.00043 * 8 6 4 10 10 H 1.48501 * 109.47083 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47560 * 300.00239 * 8 6 4 12 12 C 1.46504 * 119.99983 * 275.54474 * 3 2 1 13 13 H 1.08997 * 109.47147 * 0.02562 * 12 3 2 14 14 C 1.52995 * 109.47630 * 240.00081 * 12 3 2 15 15 C 1.52992 * 109.47363 * 180.02562 * 14 12 3 16 16 C 1.52999 * 109.47257 * 60.00252 * 15 14 12 17 17 C 1.53003 * 109.46922 * 300.00020 * 16 15 14 18 18 C 1.52992 * 109.47171 * 59.99927 * 17 16 15 19 19 H 1.09003 * 109.47435 * 59.99895 * 18 17 16 20 20 C 1.53003 * 109.47171 * 179.97438 * 18 17 16 21 21 H 1.08998 * 109.47061 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46782 * 300.00149 * 1 2 3 23 23 H 1.09000 * 109.47174 * 59.99835 * 1 2 3 24 24 H 1.09000 * 109.47174 * 120.00165 * 2 1 3 25 25 H 1.09002 * 109.46782 * 239.99851 * 2 1 3 26 26 H 0.96995 * 120.00261 * 180.02562 * 7 6 4 27 27 H 1.09003 * 109.47028 * 300.00765 * 14 12 3 28 28 H 1.09006 * 109.46853 * 60.00087 * 14 12 3 29 29 H 1.09003 * 109.47435 * 300.00224 * 15 14 12 30 30 H 1.09007 * 109.47435 * 180.02562 * 15 14 12 31 31 H 1.09007 * 109.47132 * 180.02562 * 16 15 14 32 32 H 1.08994 * 109.47463 * 59.99892 * 16 15 14 33 33 H 1.09003 * 109.47026 * 299.99572 * 17 16 15 34 34 H 1.08992 * 109.47116 * 180.02562 * 17 16 15 35 35 H 1.09007 * 109.46915 * 180.02562 * 20 18 17 36 36 H 1.08999 * 109.46933 * 299.99526 * 20 18 17 37 37 H 1.08994 * 109.46947 * 60.00261 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3547 1.9885 1.1803 5 1 2.1960 3.0493 1.3062 6 6 2.8997 1.2406 2.2150 7 7 3.4870 0.0911 1.9577 8 14 2.7996 1.8656 3.9725 9 1 1.3752 2.0289 4.3595 10 1 3.4506 0.8895 4.8828 11 1 3.4928 3.1750 4.0725 12 6 2.1469 2.1127 -1.2628 13 1 1.8349 1.4717 -2.0874 14 6 3.6049 2.5302 -1.4643 15 6 3.7390 3.2946 -2.7828 16 6 2.8527 4.5411 -2.7421 17 6 1.3946 4.1236 -2.5406 18 6 1.2605 3.3592 -1.2221 19 1 1.5723 3.9999 -0.3973 20 6 -0.1978 2.9423 -1.0204 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 3.8675 -0.4316 2.6808 27 1 3.9166 3.1712 -0.6396 28 1 4.2365 1.6422 -1.4929 29 1 3.4273 2.6539 -3.6077 30 1 4.7779 3.5917 -2.9266 31 1 2.9479 5.0855 -3.6817 32 1 3.1644 5.1818 -1.9173 33 1 1.0828 3.4829 -3.3655 34 1 0.7631 5.0115 -2.5121 35 1 -0.2933 2.3980 -0.0807 36 1 -0.8288 3.8305 -0.9911 37 1 -0.5099 2.3016 -1.8451 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307309067.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:50 Heat of formation + Delta-G solvation = -22.010384 kcal Electronic energy + Delta-G solvation = -15379.686169 eV Core-core repulsion = 13155.844713 eV Total energy + Delta-G solvation = -2223.841457 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.00440 -36.71970 -33.61427 -32.91603 -31.72818 -29.49987 -27.13026 -25.59641 -23.49726 -22.20943 -21.55158 -20.64550 -18.03917 -16.99534 -16.11220 -15.57487 -15.24713 -15.13890 -14.97430 -14.45928 -14.11113 -13.58387 -13.27275 -13.15690 -13.04626 -12.69496 -12.64578 -12.51145 -12.24801 -12.05088 -11.79455 -11.68380 -11.56015 -11.44039 -11.02448 -10.91292 -10.75522 -10.36174 -8.46694 -7.73837 -5.28627 1.45541 1.48189 1.53914 2.55096 3.31357 3.64015 3.97475 4.10009 4.26408 4.42532 4.49955 4.58921 4.66125 4.75836 4.82552 4.85256 4.92111 4.97116 5.00843 5.07592 5.15178 5.20851 5.25826 5.36489 5.40248 5.46791 5.53206 5.55916 5.65058 5.75973 5.77861 5.81764 5.95988 6.54794 7.26290 8.00746 8.49912 9.22702 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.029784 B = 0.011754 C = 0.010660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.874030 B = 2381.500821 C = 2626.042681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.135 3.865 3 N -0.591 5.591 4 C -0.235 4.235 5 H 0.054 0.946 6 C -0.047 4.047 7 N -0.923 5.923 8 Si 0.948 3.052 9 H -0.282 1.282 10 H -0.296 1.296 11 H -0.279 1.279 12 C 0.178 3.822 13 H 0.049 0.951 14 C -0.115 4.115 15 C -0.110 4.110 16 C -0.113 4.113 17 C -0.105 4.105 18 C -0.095 4.095 19 H 0.042 0.958 20 C -0.133 4.133 21 H 0.050 0.950 22 H 0.033 0.967 23 H 0.056 0.944 24 H 0.067 0.933 25 H 0.014 0.986 26 H 0.247 0.753 27 H 0.035 0.965 28 H 0.025 0.975 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.047 0.953 36 H 0.052 0.948 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.483 5.932 -8.943 11.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.009 3.991 3 N -0.311 5.311 4 C -0.366 4.366 5 H 0.072 0.928 6 C -0.243 4.243 7 N -0.569 5.569 8 Si 0.778 3.222 9 H -0.209 1.209 10 H -0.223 1.223 11 H -0.205 1.205 12 C 0.071 3.929 13 H 0.067 0.933 14 C -0.154 4.154 15 C -0.148 4.148 16 C -0.150 4.150 17 C -0.142 4.142 18 C -0.115 4.115 19 H 0.060 0.940 20 C -0.190 4.190 21 H 0.069 0.931 22 H 0.052 0.948 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.033 0.967 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.044 0.956 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.402 5.808 -8.836 11.454 hybrid contribution 0.342 -0.127 1.409 1.455 sum -4.061 5.681 -7.427 10.194 Atomic orbital electron populations 1.22315 0.98385 0.99832 1.00563 1.20891 0.91818 0.86352 1.00023 1.44092 1.73865 1.11286 1.01844 1.19060 1.32795 0.93467 0.91286 0.92821 1.25639 0.98205 0.98477 1.01943 1.70104 1.39126 1.16403 1.31274 0.85631 0.77597 0.77350 0.81668 1.20856 1.22273 1.20506 1.20552 0.92665 0.92261 0.87387 0.93271 1.21801 0.98302 0.98255 0.97061 1.21508 0.99755 0.97087 0.96452 1.21499 0.94909 0.96884 1.01744 1.21544 0.96580 0.99684 0.96438 1.21393 0.95844 0.96980 0.97266 0.93956 1.21797 0.95351 1.00430 1.01414 0.93138 0.94823 0.92524 0.91488 0.96716 0.94385 0.94602 0.95625 0.91618 0.92017 0.90082 0.93201 0.91507 0.91203 0.93386 0.92907 0.92962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.04 8.78 71.98 0.63 -5.41 16 2 C 0.14 6.50 5.90 86.38 0.51 7.01 16 3 N -0.59 -28.92 1.71 -678.03 -1.16 -30.07 16 4 C -0.24 -12.75 8.26 84.03 0.69 -12.05 16 5 H 0.05 2.94 6.82 -2.91 -0.02 2.92 16 6 C -0.05 -2.63 4.94 84.86 0.42 -2.21 16 7 N -0.92 -54.65 11.27 21.65 0.24 -54.41 16 8 Si 0.95 45.52 29.61 68.60 2.03 47.55 16 9 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 10 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 C 0.18 7.29 2.08 44.99 0.09 7.38 16 13 H 0.05 1.95 7.87 -2.39 -0.02 1.93 16 14 C -0.11 -4.66 5.17 30.59 0.16 -4.50 16 15 C -0.11 -3.29 5.92 30.59 0.18 -3.11 16 16 C -0.11 -2.97 5.92 30.60 0.18 -2.79 16 17 C -0.10 -2.83 5.20 30.59 0.16 -2.67 16 18 C -0.09 -3.34 2.08 -10.79 -0.02 -3.36 16 19 H 0.04 1.71 6.97 -2.39 -0.02 1.69 16 20 C -0.13 -4.41 7.80 71.98 0.56 -3.85 16 21 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 22 H 0.03 1.41 7.71 -2.39 -0.02 1.39 16 23 H 0.06 2.04 5.91 -2.39 -0.01 2.03 16 24 H 0.07 3.72 5.28 -2.39 -0.01 3.71 16 25 H 0.01 0.68 8.04 -2.39 -0.02 0.66 16 26 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 27 H 0.04 1.62 7.66 -2.39 -0.02 1.60 16 28 H 0.02 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.08 1.68 8.14 -2.38 -0.02 1.67 16 32 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.05 1.86 5.52 -2.38 -0.01 1.84 16 36 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.05 1.59 7.39 -2.39 -0.02 1.57 16 Total: -1.00 -59.68 276.70 5.69 -53.99 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 1.01 Total: 8.51 kcal Atomic # 6 Polarization: -29.13 SS G_CDS: 3.57 Total: -25.57 kcal Atomic # 7 Polarization: -83.57 SS G_CDS: -0.91 Total: -84.48 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -59.68 5.69 -53.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307309067.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.982 kcal (2) G-P(sol) polarization free energy of solvation -59.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds