Wall clock time and date at job start Sun Mar 29 2020 21:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47638 * 2 1 4 4 C 1.36936 * 119.99995 * 272.16850 * 3 2 1 5 5 H 1.07995 * 120.00266 * 198.01603 * 4 3 2 6 6 C 1.38816 * 120.00072 * 18.01271 * 4 3 2 7 7 N 1.31619 * 119.99801 * 350.59047 * 6 4 3 8 8 Si 1.86794 * 120.00260 * 170.59521 * 6 4 3 9 9 H 1.48503 * 109.47078 * 59.99761 * 8 6 4 10 10 H 1.48496 * 109.47292 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47336 * 299.99666 * 8 6 4 12 12 C 1.46497 * 119.99948 * 92.16283 * 3 2 1 13 13 H 1.08997 * 109.47420 * 352.27172 * 12 3 2 14 14 C 1.53003 * 109.47089 * 112.27949 * 12 3 2 15 15 C 1.52997 * 109.47249 * 59.99578 * 14 12 3 16 16 C 1.53001 * 109.46999 * 60.00415 * 15 14 12 17 17 C 1.53002 * 109.46964 * 299.99532 * 16 15 14 18 18 C 1.52997 * 109.46880 * 60.00395 * 17 16 15 19 19 H 1.09004 * 109.47174 * 59.99872 * 18 17 16 20 20 C 1.52999 * 109.46894 * 179.97438 * 18 17 16 21 21 H 1.09001 * 109.46921 * 300.00693 * 1 2 3 22 22 H 1.09002 * 109.46894 * 59.99759 * 1 2 3 23 23 H 1.08994 * 109.47223 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47104 * 240.00037 * 2 1 3 25 25 H 1.09003 * 109.46897 * 119.99686 * 2 1 3 26 26 H 0.97001 * 120.00401 * 180.02562 * 7 6 4 27 27 H 1.09000 * 109.46285 * 299.99420 * 14 12 3 28 28 H 1.08995 * 109.47183 * 179.97438 * 14 12 3 29 29 H 1.09006 * 109.46875 * 180.02562 * 15 14 12 30 30 H 1.09004 * 109.47174 * 300.00127 * 15 14 12 31 31 H 1.08995 * 109.47162 * 59.99761 * 16 15 14 32 32 H 1.09007 * 109.46666 * 179.97438 * 16 15 14 33 33 H 1.09000 * 109.46468 * 180.02562 * 17 16 15 34 34 H 1.08995 * 109.47368 * 300.00102 * 17 16 15 35 35 H 1.09004 * 109.46998 * 60.00152 * 20 18 17 36 36 H 1.09007 * 109.47296 * 179.97438 * 20 18 17 37 37 H 1.09001 * 109.47381 * 299.99791 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2044 2.0416 -1.1851 5 1 2.8229 2.9263 -1.2190 6 6 1.5980 1.5741 -2.3429 7 7 0.9998 0.4017 -2.3450 8 14 1.6310 2.6086 -3.8978 9 1 3.0394 2.8491 -4.3025 10 1 0.9197 1.8902 -4.9855 11 1 0.9606 3.9087 -3.6418 12 6 2.3078 2.0558 1.2678 13 1 1.9735 1.4313 2.0963 14 6 3.8143 2.2959 1.3855 15 6 4.2835 3.1724 0.2227 16 6 3.5485 4.5136 0.2661 17 6 2.0420 4.2736 0.1483 18 6 1.5728 3.3970 1.3112 19 1 1.7881 3.8990 2.2545 20 6 0.0662 3.1575 1.1937 21 1 -0.3633 0.5140 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 0.5763 0.0747 -3.1541 27 1 4.3378 1.3403 1.3547 28 1 4.0295 2.7982 2.3286 29 1 5.3568 3.3430 0.3063 30 1 4.0682 2.6704 -0.7207 31 1 3.7638 5.0155 1.2094 32 1 3.8831 5.1383 -0.5622 33 1 1.5185 5.2291 0.1788 34 1 1.8267 3.7717 -0.7950 35 1 -0.1494 2.6557 0.2504 36 1 -0.2680 2.5326 2.0220 37 1 -0.4571 4.1132 1.2249 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307309068.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:52 Heat of formation + Delta-G solvation = 46.203949 kcal Electronic energy + Delta-G solvation = -15969.779917 eV Core-core repulsion = 13748.896456 eV Total energy + Delta-G solvation = -2220.883461 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.03701 -34.38568 -31.85485 -31.13014 -29.37829 -28.31978 -25.42708 -23.73131 -21.49634 -20.54895 -20.40925 -18.49105 -16.71100 -14.58463 -14.49474 -13.99385 -13.53491 -13.18313 -13.07394 -12.54714 -12.24280 -11.73987 -11.38053 -11.27388 -11.08860 -10.85820 -10.78844 -10.66099 -10.58075 -10.37240 -10.11597 -9.91797 -9.77457 -9.37274 -9.25332 -9.04671 -8.47932 -7.84174 -6.56214 -5.59014 -3.01852 3.39974 3.45986 3.48155 4.52580 5.35591 5.47552 5.59377 5.71276 5.86016 6.07505 6.11116 6.23933 6.36113 6.43004 6.50323 6.53765 6.65238 6.67849 6.74966 6.77999 6.81360 7.04192 7.07722 7.18468 7.22940 7.24920 7.26378 7.38787 7.44577 7.64551 7.82895 8.01173 8.27934 8.56671 9.37376 10.00817 10.48065 11.35320 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.025349 B = 0.017466 C = 0.013728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.330457 B = 1602.743682 C = 2039.073915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.170 3.830 3 N -0.592 5.592 4 C -0.251 4.251 5 H 0.117 0.883 6 C -0.010 4.010 7 N -0.899 5.899 8 Si 0.888 3.112 9 H -0.285 1.285 10 H -0.292 1.292 11 H -0.284 1.284 12 C 0.180 3.820 13 H 0.046 0.954 14 C -0.122 4.122 15 C -0.141 4.141 16 C -0.109 4.109 17 C -0.159 4.159 18 C -0.084 4.084 19 H 0.040 0.960 20 C -0.136 4.136 21 H 0.005 0.995 22 H 0.089 0.911 23 H 0.011 0.989 24 H 0.097 0.903 25 H -0.009 1.009 26 H 0.248 0.752 27 H 0.050 0.950 28 H 0.038 0.962 29 H 0.033 0.967 30 H 0.113 0.887 31 H 0.039 0.961 32 H 0.046 0.954 33 H 0.029 0.971 34 H 0.137 0.863 35 H 0.079 0.921 36 H 0.034 0.966 37 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.924 3.817 4.970 6.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.045 3.955 3 N -0.314 5.314 4 C -0.379 4.379 5 H 0.133 0.867 6 C -0.206 4.206 7 N -0.547 5.547 8 Si 0.718 3.282 9 H -0.212 1.212 10 H -0.217 1.217 11 H -0.211 1.211 12 C 0.072 3.928 13 H 0.064 0.936 14 C -0.162 4.162 15 C -0.178 4.178 16 C -0.147 4.147 17 C -0.195 4.195 18 C -0.104 4.104 19 H 0.058 0.942 20 C -0.193 4.193 21 H 0.024 0.976 22 H 0.108 0.892 23 H 0.030 0.970 24 H 0.115 0.885 25 H 0.010 0.990 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.130 0.870 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.154 0.846 35 H 0.098 0.902 36 H 0.053 0.947 37 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 1.843 3.710 4.823 6.358 hybrid contribution -0.106 0.630 -0.614 0.887 sum 1.736 4.341 4.209 6.291 Atomic orbital electron populations 1.22631 0.99607 0.97604 1.00534 1.20895 0.92352 0.84535 0.97723 1.44063 1.76682 1.10503 1.00163 1.20060 1.23233 1.08840 0.85786 0.86681 1.25002 0.99927 0.97529 0.98126 1.70168 1.40828 1.17349 1.26359 0.86559 0.77674 0.80206 0.83729 1.21165 1.21748 1.21073 1.20306 0.91690 0.91888 0.88961 0.93575 1.21947 0.98994 0.98603 0.96660 1.22074 0.96701 0.96102 1.02928 1.21408 0.96906 0.96977 0.99381 1.22654 0.93846 0.98193 1.04836 1.21245 0.95489 0.97111 0.96602 0.94190 1.21758 0.95454 0.99270 1.02801 0.97551 0.89247 0.96958 0.88493 0.99040 0.94087 0.93151 0.94316 0.94861 0.86963 0.94192 0.93570 0.95178 0.84556 0.90184 0.94661 0.95105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 8.68 37.16 0.32 -3.04 16 2 C 0.17 4.06 5.62 -4.04 -0.02 4.03 16 3 N -0.59 -13.73 1.75 -165.69 -0.29 -14.02 16 4 C -0.25 -6.14 5.19 -15.06 -0.08 -6.21 16 5 H 0.12 2.71 2.45 -52.49 -0.13 2.58 16 6 C -0.01 -0.25 5.32 -17.43 -0.09 -0.34 16 7 N -0.90 -24.03 7.36 55.49 0.41 -23.63 16 8 Si 0.89 20.76 29.56 -169.99 -5.03 15.73 16 9 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 12 C 0.18 3.67 2.70 -67.93 -0.18 3.49 16 13 H 0.05 0.94 7.84 -51.93 -0.41 0.53 16 14 C -0.12 -2.30 5.64 -26.73 -0.15 -2.45 16 15 C -0.14 -2.66 5.56 -26.73 -0.15 -2.81 16 16 C -0.11 -1.95 5.60 -26.73 -0.15 -2.10 16 17 C -0.16 -3.11 4.82 -26.73 -0.13 -3.24 16 18 C -0.08 -1.63 2.48 -90.62 -0.22 -1.86 16 19 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 20 C -0.14 -2.64 8.33 37.16 0.31 -2.33 16 21 H 0.01 0.12 7.00 -51.93 -0.36 -0.24 16 22 H 0.09 2.32 5.88 -51.93 -0.31 2.01 16 23 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 24 H 0.10 2.58 6.00 -51.93 -0.31 2.27 16 25 H -0.01 -0.20 7.95 -51.93 -0.41 -0.61 16 26 H 0.25 6.62 8.31 -40.82 -0.34 6.28 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.11 2.42 4.49 -51.93 -0.23 2.18 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.14 3.06 3.82 -51.98 -0.20 2.86 16 35 H 0.08 1.80 6.28 -51.93 -0.33 1.48 16 36 H 0.03 0.65 7.95 -51.93 -0.41 0.23 16 37 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 261.16 15.07 3.94 3.94 Total: -1.00 -24.88 261.16 -7.56 -32.44 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.04 Total: 2.41 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -0.55 Total: -16.87 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.12 Total: -37.65 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -24.88 -7.56 -32.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307309068.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.645 kcal (2) G-P(sol) polarization free energy of solvation -24.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds