Wall clock time and date at job start Sun Mar 29 2020 21:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47638 * 2 1 4 4 C 1.36936 * 119.99995 * 272.16850 * 3 2 1 5 5 H 1.07995 * 120.00266 * 198.01603 * 4 3 2 6 6 C 1.38816 * 120.00072 * 18.01271 * 4 3 2 7 7 N 1.31619 * 119.99801 * 350.59047 * 6 4 3 8 8 Si 1.86794 * 120.00260 * 170.59521 * 6 4 3 9 9 H 1.48503 * 109.47078 * 59.99761 * 8 6 4 10 10 H 1.48496 * 109.47292 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47336 * 299.99666 * 8 6 4 12 12 C 1.46497 * 119.99948 * 92.16283 * 3 2 1 13 13 H 1.08997 * 109.47420 * 352.27172 * 12 3 2 14 14 C 1.53003 * 109.47089 * 112.27949 * 12 3 2 15 15 C 1.52997 * 109.47249 * 59.99578 * 14 12 3 16 16 C 1.53001 * 109.46999 * 60.00415 * 15 14 12 17 17 C 1.53002 * 109.46964 * 299.99532 * 16 15 14 18 18 C 1.52997 * 109.46880 * 60.00395 * 17 16 15 19 19 H 1.09004 * 109.47174 * 59.99872 * 18 17 16 20 20 C 1.52999 * 109.46894 * 179.97438 * 18 17 16 21 21 H 1.09001 * 109.46921 * 300.00693 * 1 2 3 22 22 H 1.09002 * 109.46894 * 59.99759 * 1 2 3 23 23 H 1.08994 * 109.47223 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47104 * 240.00037 * 2 1 3 25 25 H 1.09003 * 109.46897 * 119.99686 * 2 1 3 26 26 H 0.97001 * 120.00401 * 180.02562 * 7 6 4 27 27 H 1.09000 * 109.46285 * 299.99420 * 14 12 3 28 28 H 1.08995 * 109.47183 * 179.97438 * 14 12 3 29 29 H 1.09006 * 109.46875 * 180.02562 * 15 14 12 30 30 H 1.09004 * 109.47174 * 300.00127 * 15 14 12 31 31 H 1.08995 * 109.47162 * 59.99761 * 16 15 14 32 32 H 1.09007 * 109.46666 * 179.97438 * 16 15 14 33 33 H 1.09000 * 109.46468 * 180.02562 * 17 16 15 34 34 H 1.08995 * 109.47368 * 300.00102 * 17 16 15 35 35 H 1.09004 * 109.46998 * 60.00152 * 20 18 17 36 36 H 1.09007 * 109.47296 * 179.97438 * 20 18 17 37 37 H 1.09001 * 109.47381 * 299.99791 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2044 2.0416 -1.1851 5 1 2.8229 2.9263 -1.2190 6 6 1.5980 1.5741 -2.3429 7 7 0.9998 0.4017 -2.3450 8 14 1.6310 2.6086 -3.8978 9 1 3.0394 2.8491 -4.3025 10 1 0.9197 1.8902 -4.9855 11 1 0.9606 3.9087 -3.6418 12 6 2.3078 2.0558 1.2678 13 1 1.9735 1.4313 2.0963 14 6 3.8143 2.2959 1.3855 15 6 4.2835 3.1724 0.2227 16 6 3.5485 4.5136 0.2661 17 6 2.0420 4.2736 0.1483 18 6 1.5728 3.3970 1.3112 19 1 1.7881 3.8990 2.2545 20 6 0.0662 3.1575 1.1937 21 1 -0.3633 0.5140 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 0.5763 0.0747 -3.1541 27 1 4.3378 1.3403 1.3547 28 1 4.0295 2.7982 2.3286 29 1 5.3568 3.3430 0.3063 30 1 4.0682 2.6704 -0.7207 31 1 3.7638 5.0155 1.2094 32 1 3.8831 5.1383 -0.5622 33 1 1.5185 5.2291 0.1788 34 1 1.8267 3.7717 -0.7950 35 1 -0.1494 2.6557 0.2504 36 1 -0.2680 2.5326 2.0220 37 1 -0.4571 4.1132 1.2249 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307309068.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:52 Heat of formation + Delta-G solvation = 35.247138 kcal Electronic energy + Delta-G solvation = -15970.255040 eV Core-core repulsion = 13748.896456 eV Total energy + Delta-G solvation = -2221.358584 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.66084 -36.16962 -33.47058 -32.83667 -31.11110 -30.11884 -27.04892 -25.49603 -23.19471 -22.31708 -21.93211 -20.15194 -18.55192 -16.39687 -16.09406 -15.63519 -15.25166 -14.97708 -14.62445 -14.19323 -13.85341 -13.49041 -13.15670 -12.99166 -12.70142 -12.64018 -12.49199 -12.41324 -12.20620 -12.02320 -11.85865 -11.65308 -11.46581 -11.24274 -10.79338 -10.57956 -10.28610 -9.65541 -8.42463 -7.52957 -4.93863 1.51748 1.55300 1.57520 2.63185 3.46831 3.76499 4.08054 4.20086 4.30283 4.56624 4.59930 4.74726 4.84467 4.88897 4.92298 4.98676 5.03471 5.13597 5.17426 5.22497 5.24352 5.32142 5.37661 5.43278 5.54356 5.66763 5.67048 5.73401 5.81436 5.91568 6.02876 6.12755 6.35155 6.62999 7.43169 8.15263 8.57631 9.41004 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.025349 B = 0.017466 C = 0.013728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.330457 B = 1602.743682 C = 2039.073915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.172 3.828 3 N -0.599 5.599 4 C -0.230 4.230 5 H 0.129 0.871 6 C -0.065 4.065 7 N -0.924 5.924 8 Si 0.934 3.066 9 H -0.282 1.282 10 H -0.306 1.306 11 H -0.283 1.283 12 C 0.172 3.828 13 H 0.048 0.952 14 C -0.118 4.118 15 C -0.139 4.139 16 C -0.105 4.105 17 C -0.159 4.159 18 C -0.082 4.082 19 H 0.065 0.935 20 C -0.130 4.130 21 H 0.014 0.986 22 H 0.062 0.938 23 H 0.017 0.983 24 H 0.067 0.933 25 H 0.004 0.996 26 H 0.235 0.765 27 H 0.041 0.959 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.042 0.958 34 H 0.104 0.896 35 H 0.043 0.957 36 H 0.041 0.959 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.827 5.496 6.706 9.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.047 3.953 3 N -0.321 5.321 4 C -0.359 4.359 5 H 0.145 0.855 6 C -0.257 4.257 7 N -0.575 5.575 8 Si 0.765 3.235 9 H -0.209 1.209 10 H -0.233 1.233 11 H -0.210 1.210 12 C 0.065 3.935 13 H 0.066 0.934 14 C -0.157 4.157 15 C -0.176 4.176 16 C -0.142 4.142 17 C -0.195 4.195 18 C -0.102 4.102 19 H 0.083 0.917 20 C -0.187 4.187 21 H 0.033 0.967 22 H 0.081 0.919 23 H 0.036 0.964 24 H 0.085 0.915 25 H 0.022 0.978 26 H 0.046 0.954 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.122 0.878 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.764 5.416 6.578 8.958 hybrid contribution -0.350 0.135 -1.058 1.123 sum 2.414 5.551 5.521 8.193 Atomic orbital electron populations 1.22408 0.99178 0.97634 0.99519 1.20726 0.92665 0.85165 0.96771 1.44206 1.76495 1.10346 1.01090 1.20460 1.21369 1.08156 0.85942 0.85454 1.25504 1.01378 0.98549 1.00305 1.70348 1.42692 1.18532 1.25880 0.85809 0.77345 0.78971 0.81384 1.20864 1.23319 1.20959 1.20531 0.93133 0.92398 0.87430 0.93384 1.21876 0.97287 0.98606 0.97969 1.21965 0.98185 0.96341 1.01133 1.21384 0.95253 0.96616 1.00989 1.22515 0.95488 0.98409 1.03113 1.21237 0.94898 0.96425 0.97655 0.91651 1.21668 0.96126 0.99833 1.01068 0.96669 0.91907 0.96383 0.91497 0.97797 0.95435 0.94004 0.91605 0.92863 0.90223 0.91914 0.92725 0.93957 0.87797 0.93748 0.93980 0.93508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.00 8.68 71.98 0.62 -5.38 16 2 C 0.17 8.26 5.62 86.38 0.49 8.74 16 3 N -0.60 -27.45 1.75 -678.11 -1.18 -28.64 16 4 C -0.23 -11.23 5.19 84.03 0.44 -10.80 16 5 H 0.13 5.89 2.45 -2.91 -0.01 5.88 16 6 C -0.06 -3.39 5.32 84.86 0.45 -2.94 16 7 N -0.92 -51.10 7.36 21.65 0.16 -50.94 16 8 Si 0.93 43.56 29.56 68.60 2.03 45.59 16 9 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 10 H -0.31 -14.89 7.11 99.48 0.71 -14.18 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 C 0.17 6.61 2.70 44.99 0.12 6.73 16 13 H 0.05 1.83 7.84 -2.39 -0.02 1.81 16 14 C -0.12 -4.06 5.64 30.59 0.17 -3.88 16 15 C -0.14 -4.81 5.56 30.59 0.17 -4.64 16 16 C -0.10 -3.35 5.60 30.60 0.17 -3.18 16 17 C -0.16 -5.75 4.82 30.59 0.15 -5.61 16 18 C -0.08 -2.92 2.48 -10.79 -0.03 -2.95 16 19 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 20 C -0.13 -4.78 8.33 71.98 0.60 -4.18 16 21 H 0.01 0.64 7.00 -2.39 -0.02 0.62 16 22 H 0.06 3.33 5.88 -2.39 -0.01 3.32 16 23 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.07 3.66 6.00 -2.39 -0.01 3.65 16 25 H 0.00 0.17 7.95 -2.39 -0.02 0.15 16 26 H 0.24 13.13 8.31 -92.71 -0.77 12.36 16 27 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.07 1.93 8.14 -2.39 -0.02 1.92 16 29 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.08 3.30 4.49 -2.39 -0.01 3.29 16 31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.10 4.51 3.82 -2.43 -0.01 4.51 16 35 H 0.04 1.96 6.28 -2.39 -0.01 1.94 16 36 H 0.04 1.45 7.95 -2.38 -0.02 1.44 16 37 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -52.96 261.16 5.39 -47.57 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 1.03 Total: 14.49 kcal Atomic # 6 Polarization: -31.43 SS G_CDS: 3.35 Total: -28.07 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -1.02 Total: -79.57 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -52.96 5.39 -47.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307309068.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.818 kcal (2) G-P(sol) polarization free energy of solvation -52.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds