Wall clock time and date at job start Sun Mar 29 2020 21:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.46928 * 2 1 4 4 C 1.36931 * 120.00069 * 268.66512 * 3 2 1 5 5 H 1.08004 * 119.99897 * 145.01918 * 4 3 2 6 6 C 1.38815 * 120.00202 * 325.01786 * 4 3 2 7 7 N 1.31616 * 119.99656 * 337.12490 * 6 4 3 8 8 Si 1.86793 * 120.00092 * 157.12695 * 6 4 3 9 9 H 1.48503 * 109.47392 * 90.00046 * 8 6 4 10 10 H 1.48506 * 109.47150 * 210.00169 * 8 6 4 11 11 H 1.48505 * 109.47426 * 329.99784 * 8 6 4 12 12 C 1.46503 * 119.99893 * 88.66073 * 3 2 1 13 13 H 1.09000 * 109.46738 * 0.02562 * 12 3 2 14 14 C 1.53001 * 109.46720 * 119.99840 * 12 3 2 15 15 C 1.53001 * 109.46922 * 180.02562 * 14 12 3 16 16 C 1.53001 * 109.47268 * 300.00265 * 15 14 12 17 17 C 1.53000 * 109.46872 * 59.99808 * 16 15 14 18 18 C 1.52992 * 109.47509 * 299.99799 * 17 16 15 19 19 H 1.08998 * 109.47475 * 300.00635 * 18 17 16 20 20 C 1.53000 * 109.47509 * 179.97438 * 18 17 16 21 21 H 1.09007 * 109.47146 * 59.99964 * 1 2 3 22 22 H 1.09001 * 109.46810 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47415 * 299.99752 * 1 2 3 24 24 H 1.08996 * 109.47027 * 240.00357 * 2 1 3 25 25 H 1.08997 * 109.47290 * 120.00093 * 2 1 3 26 26 H 0.97002 * 119.99692 * 179.97438 * 7 6 4 27 27 H 1.08995 * 109.47316 * 300.00212 * 14 12 3 28 28 H 1.09000 * 109.47086 * 60.00738 * 14 12 3 29 29 H 1.09005 * 109.47245 * 180.02562 * 15 14 12 30 30 H 1.08996 * 109.47182 * 60.00492 * 15 14 12 31 31 H 1.08996 * 109.47205 * 300.00214 * 16 15 14 32 32 H 1.08999 * 109.47062 * 179.97438 * 16 15 14 33 33 H 1.09007 * 109.47091 * 60.00649 * 17 16 15 34 34 H 1.09003 * 109.47096 * 179.97438 * 17 16 15 35 35 H 1.08995 * 109.46822 * 60.00260 * 20 18 17 36 36 H 1.08993 * 109.47461 * 180.02562 * 20 18 17 37 37 H 1.09006 * 109.46696 * 300.00495 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2725 2.0176 -1.1855 5 1 2.0802 3.0759 -1.2825 6 6 2.7776 1.3024 -2.2628 7 7 3.4251 0.1749 -2.0586 8 14 2.5381 1.9403 -4.0020 9 1 3.6786 2.8178 -4.3689 10 1 2.4718 0.7947 -4.9447 11 1 1.2736 2.7155 -4.0754 12 6 2.2345 2.0818 1.2684 13 1 1.9805 1.4202 2.0966 14 6 3.7034 2.4954 1.3786 15 6 3.9293 3.2264 2.7035 16 6 3.0432 4.4726 2.7561 17 6 1.5744 4.0588 2.6459 18 6 1.3483 3.3279 1.3210 19 1 1.6026 3.9896 0.4930 20 6 -0.1204 2.9136 1.2110 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.7777 -0.3250 -2.8114 27 1 4.3346 1.6076 1.3416 28 1 3.9577 3.1568 0.5504 29 1 4.9758 3.5215 2.7819 30 1 3.6752 2.5647 3.5315 31 1 3.2974 5.1343 1.9281 32 1 3.2039 4.9931 3.7002 33 1 1.3201 3.3971 3.4740 34 1 0.9430 4.9466 2.6838 35 1 -0.7520 3.8012 1.2487 36 1 -0.2813 2.3926 0.2674 37 1 -0.3741 2.2517 2.0391 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307309069.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:54 Heat of formation + Delta-G solvation = -9.177899 kcal Electronic energy + Delta-G solvation = -15375.872039 eV Core-core repulsion = 13152.587040 eV Total energy + Delta-G solvation = -2223.284998 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.43968 -34.96829 -31.92975 -31.15990 -30.10124 -27.79205 -25.50681 -23.81716 -21.88165 -20.67032 -19.89325 -19.09922 -16.10706 -15.13841 -14.32845 -13.90241 -13.69322 -13.64579 -13.41632 -12.90106 -12.47220 -11.90364 -11.68207 -11.57310 -11.29742 -11.13678 -10.94620 -10.75490 -10.48389 -10.44003 -10.18717 -10.05785 -9.96190 -9.72117 -9.41750 -9.31105 -9.17628 -8.34586 -6.45005 -5.68105 -3.21243 3.39939 3.47943 3.51261 4.55545 5.21857 5.35850 5.36718 5.47333 5.68874 5.83841 5.93091 6.10876 6.15194 6.18044 6.27783 6.31404 6.41185 6.42741 6.48610 6.58422 6.63859 6.67031 6.78418 6.78961 6.94707 6.97853 7.08711 7.14253 7.29114 7.37839 7.43182 7.83978 7.93175 8.61934 9.30960 9.95984 10.53229 11.31574 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.029855 B = 0.011758 C = 0.010660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.639451 B = 2380.767864 C = 2626.046109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.139 3.861 3 N -0.579 5.579 4 C -0.244 4.244 5 H 0.059 0.941 6 C 0.007 3.993 7 N -0.889 5.889 8 Si 0.890 3.110 9 H -0.288 1.288 10 H -0.291 1.291 11 H -0.280 1.280 12 C 0.183 3.817 13 H 0.043 0.957 14 C -0.120 4.120 15 C -0.117 4.117 16 C -0.116 4.116 17 C -0.110 4.110 18 C -0.100 4.100 19 H 0.068 0.932 20 C -0.138 4.138 21 H 0.048 0.952 22 H 0.029 0.971 23 H 0.040 0.960 24 H 0.095 0.905 25 H 0.017 0.983 26 H 0.252 0.748 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.031 0.969 36 H 0.075 0.925 37 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.975 4.293 7.604 9.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.013 3.987 3 N -0.298 5.298 4 C -0.374 4.374 5 H 0.077 0.923 6 C -0.192 4.192 7 N -0.532 5.532 8 Si 0.720 3.280 9 H -0.215 1.215 10 H -0.217 1.217 11 H -0.205 1.205 12 C 0.075 3.925 13 H 0.061 0.939 14 C -0.159 4.159 15 C -0.156 4.156 16 C -0.153 4.153 17 C -0.148 4.148 18 C -0.120 4.120 19 H 0.086 0.914 20 C -0.195 4.195 21 H 0.067 0.933 22 H 0.048 0.952 23 H 0.059 0.941 24 H 0.112 0.888 25 H 0.036 0.964 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.051 0.949 36 H 0.094 0.906 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.895 4.150 7.476 9.027 hybrid contribution -0.074 0.292 -0.978 1.023 sum -2.969 4.442 6.498 8.412 Atomic orbital electron populations 1.22514 1.01175 0.98465 1.00654 1.20914 0.89781 0.86679 1.01306 1.43887 1.74232 1.11234 1.00467 1.18910 1.36061 0.94009 0.88400 0.92308 1.25054 0.97362 0.98102 0.98728 1.70009 1.36138 1.17350 1.29735 0.86507 0.78143 0.77915 0.85481 1.21513 1.21697 1.20523 1.20359 0.91592 0.91631 0.88868 0.93864 1.21901 0.98995 0.99756 0.95292 1.21571 0.98266 0.96730 0.99001 1.21502 0.95668 0.97732 1.00417 1.21582 0.95652 0.99242 0.98371 1.21491 0.95850 0.98689 0.95962 0.91357 1.21869 0.95668 0.99536 1.02461 0.93333 0.95200 0.94075 0.88787 0.96445 0.93837 0.92673 0.91726 0.93225 0.93025 0.92332 0.93308 0.92873 0.93210 0.94941 0.90625 0.94256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.44 8.85 37.16 0.33 -3.11 16 2 C 0.14 3.29 5.97 -4.04 -0.02 3.27 16 3 N -0.58 -13.96 1.69 -165.66 -0.28 -14.24 16 4 C -0.24 -6.47 8.22 -15.06 -0.12 -6.59 16 5 H 0.06 1.58 6.85 -52.48 -0.36 1.22 16 6 C 0.01 0.19 4.93 -17.43 -0.09 0.10 16 7 N -0.89 -25.49 11.40 55.49 0.63 -24.86 16 8 Si 0.89 21.64 29.61 -169.99 -5.03 16.61 16 9 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 C 0.18 3.80 2.07 -67.93 -0.14 3.66 16 13 H 0.04 0.89 7.81 -51.93 -0.41 0.48 16 14 C -0.12 -2.43 5.17 -26.73 -0.14 -2.57 16 15 C -0.12 -1.90 5.92 -26.73 -0.16 -2.05 16 16 C -0.12 -1.72 5.92 -26.73 -0.16 -1.88 16 17 C -0.11 -1.70 5.20 -26.74 -0.14 -1.84 16 18 C -0.10 -1.84 2.08 -90.62 -0.19 -2.03 16 19 H 0.07 1.40 6.98 -51.93 -0.36 1.04 16 20 C -0.14 -2.45 7.85 37.16 0.29 -2.16 16 21 H 0.05 1.04 7.94 -51.93 -0.41 0.63 16 22 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.04 0.78 5.85 -51.93 -0.30 0.47 16 24 H 0.09 2.52 5.39 -51.93 -0.28 2.24 16 25 H 0.02 0.39 7.95 -51.93 -0.41 -0.02 16 26 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.06 1.44 7.66 -51.93 -0.40 1.04 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 1.51 5.55 -51.93 -0.29 1.23 16 37 H 0.04 0.66 7.57 -51.93 -0.39 0.26 16 LS Contribution 277.35 15.07 4.18 4.18 Total: -1.00 -27.33 277.35 -7.59 -34.93 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -6.56 Total: -1.41 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -0.54 Total: -15.21 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.35 Total: -39.10 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -27.33 -7.59 -34.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307309069.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.747 kcal (2) G-P(sol) polarization free energy of solvation -27.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds