Wall clock time and date at job start Sun Mar 29 2020 21:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.46928 * 2 1 4 4 C 1.36931 * 120.00069 * 268.66512 * 3 2 1 5 5 H 1.08004 * 119.99897 * 145.01918 * 4 3 2 6 6 C 1.38815 * 120.00202 * 325.01786 * 4 3 2 7 7 N 1.31616 * 119.99656 * 337.12490 * 6 4 3 8 8 Si 1.86793 * 120.00092 * 157.12695 * 6 4 3 9 9 H 1.48503 * 109.47392 * 90.00046 * 8 6 4 10 10 H 1.48506 * 109.47150 * 210.00169 * 8 6 4 11 11 H 1.48505 * 109.47426 * 329.99784 * 8 6 4 12 12 C 1.46503 * 119.99893 * 88.66073 * 3 2 1 13 13 H 1.09000 * 109.46738 * 0.02562 * 12 3 2 14 14 C 1.53001 * 109.46720 * 119.99840 * 12 3 2 15 15 C 1.53001 * 109.46922 * 180.02562 * 14 12 3 16 16 C 1.53001 * 109.47268 * 300.00265 * 15 14 12 17 17 C 1.53000 * 109.46872 * 59.99808 * 16 15 14 18 18 C 1.52992 * 109.47509 * 299.99799 * 17 16 15 19 19 H 1.08998 * 109.47475 * 300.00635 * 18 17 16 20 20 C 1.53000 * 109.47509 * 179.97438 * 18 17 16 21 21 H 1.09007 * 109.47146 * 59.99964 * 1 2 3 22 22 H 1.09001 * 109.46810 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47415 * 299.99752 * 1 2 3 24 24 H 1.08996 * 109.47027 * 240.00357 * 2 1 3 25 25 H 1.08997 * 109.47290 * 120.00093 * 2 1 3 26 26 H 0.97002 * 119.99692 * 179.97438 * 7 6 4 27 27 H 1.08995 * 109.47316 * 300.00212 * 14 12 3 28 28 H 1.09000 * 109.47086 * 60.00738 * 14 12 3 29 29 H 1.09005 * 109.47245 * 180.02562 * 15 14 12 30 30 H 1.08996 * 109.47182 * 60.00492 * 15 14 12 31 31 H 1.08996 * 109.47205 * 300.00214 * 16 15 14 32 32 H 1.08999 * 109.47062 * 179.97438 * 16 15 14 33 33 H 1.09007 * 109.47091 * 60.00649 * 17 16 15 34 34 H 1.09003 * 109.47096 * 179.97438 * 17 16 15 35 35 H 1.08995 * 109.46822 * 60.00260 * 20 18 17 36 36 H 1.08993 * 109.47461 * 180.02562 * 20 18 17 37 37 H 1.09006 * 109.46696 * 300.00495 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2725 2.0176 -1.1855 5 1 2.0802 3.0759 -1.2825 6 6 2.7776 1.3024 -2.2628 7 7 3.4251 0.1749 -2.0586 8 14 2.5381 1.9403 -4.0020 9 1 3.6786 2.8178 -4.3689 10 1 2.4718 0.7947 -4.9447 11 1 1.2736 2.7155 -4.0754 12 6 2.2345 2.0818 1.2684 13 1 1.9805 1.4202 2.0966 14 6 3.7034 2.4954 1.3786 15 6 3.9293 3.2264 2.7035 16 6 3.0432 4.4726 2.7561 17 6 1.5744 4.0588 2.6459 18 6 1.3483 3.3279 1.3210 19 1 1.6026 3.9896 0.4930 20 6 -0.1204 2.9136 1.2110 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.7777 -0.3250 -2.8114 27 1 4.3346 1.6076 1.3416 28 1 3.9577 3.1568 0.5504 29 1 4.9758 3.5215 2.7819 30 1 3.6752 2.5647 3.5315 31 1 3.2974 5.1343 1.9281 32 1 3.2039 4.9931 3.7002 33 1 1.3201 3.3971 3.4740 34 1 0.9430 4.9466 2.6838 35 1 -0.7520 3.8012 1.2487 36 1 -0.2813 2.3926 0.2674 37 1 -0.3741 2.2517 2.0391 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307309069.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:54 Heat of formation + Delta-G solvation = -22.473114 kcal Electronic energy + Delta-G solvation = -15376.448562 eV Core-core repulsion = 13152.587040 eV Total energy + Delta-G solvation = -2223.861522 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.99269 -36.71089 -33.60726 -32.92058 -31.73172 -29.47864 -27.12933 -25.61623 -23.47877 -22.20751 -21.57341 -20.62920 -18.03487 -16.98192 -16.12311 -15.57250 -15.25218 -15.14531 -14.96571 -14.41334 -14.13422 -13.58386 -13.29144 -13.16365 -13.04252 -12.71627 -12.61397 -12.51023 -12.25940 -12.04925 -11.80046 -11.68676 -11.54758 -11.41254 -11.03250 -10.91414 -10.75527 -10.37099 -8.45094 -7.73526 -5.30020 1.43820 1.47247 1.55643 2.54897 3.30840 3.64182 3.97920 4.10313 4.26865 4.42991 4.50358 4.58642 4.66431 4.76052 4.83076 4.85660 4.92662 4.97473 5.01024 5.07258 5.15526 5.20216 5.26171 5.36807 5.40419 5.47045 5.53760 5.56151 5.65462 5.76592 5.77698 5.82356 5.94649 6.55129 7.26620 8.00425 8.50920 9.21908 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.029855 B = 0.011758 C = 0.010660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.639451 B = 2380.767864 C = 2626.046109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.136 3.864 3 N -0.590 5.590 4 C -0.236 4.236 5 H 0.052 0.948 6 C -0.044 4.044 7 N -0.920 5.920 8 Si 0.945 3.055 9 H -0.288 1.288 10 H -0.294 1.294 11 H -0.274 1.274 12 C 0.178 3.822 13 H 0.049 0.951 14 C -0.114 4.114 15 C -0.110 4.110 16 C -0.113 4.113 17 C -0.104 4.104 18 C -0.094 4.094 19 H 0.042 0.958 20 C -0.133 4.133 21 H 0.032 0.968 22 H 0.050 0.950 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.019 0.981 26 H 0.247 0.753 27 H 0.024 0.976 28 H 0.035 0.965 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.052 0.948 36 H 0.048 0.952 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.050 5.550 9.330 11.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.010 3.990 3 N -0.310 5.310 4 C -0.367 4.367 5 H 0.070 0.930 6 C -0.240 4.240 7 N -0.566 5.566 8 Si 0.774 3.226 9 H -0.215 1.215 10 H -0.221 1.221 11 H -0.200 1.200 12 C 0.071 3.929 13 H 0.067 0.933 14 C -0.154 4.154 15 C -0.148 4.148 16 C -0.150 4.150 17 C -0.142 4.142 18 C -0.115 4.115 19 H 0.060 0.940 20 C -0.190 4.190 21 H 0.051 0.949 22 H 0.069 0.931 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.038 0.962 26 H 0.056 0.944 27 H 0.043 0.957 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.983 5.426 9.219 11.415 hybrid contribution 0.271 -0.104 -1.457 1.485 sum -3.712 5.322 7.762 10.117 Atomic orbital electron populations 1.22298 0.98383 0.99821 1.00622 1.20855 0.91965 0.86363 0.99793 1.44076 1.74491 1.11386 1.01091 1.19022 1.34446 0.93737 0.89514 0.93022 1.25656 0.97949 0.98691 1.01704 1.70136 1.37750 1.18630 1.30094 0.85622 0.78006 0.77133 0.81790 1.21503 1.22060 1.19959 1.20564 0.92359 0.92558 0.87391 0.93275 1.21794 0.98200 0.98332 0.97026 1.21511 0.99589 0.97248 0.96462 1.21498 0.94866 0.96884 1.01785 1.21544 0.96405 0.99861 0.96427 1.21386 0.95778 0.97097 0.97207 0.93984 1.21790 0.95348 1.00416 1.01463 0.94921 0.93119 0.92419 0.92093 0.96222 0.94399 0.95666 0.94652 0.92062 0.91604 0.93220 0.90091 0.91494 0.91216 0.92909 0.93326 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.05 8.85 71.98 0.64 -5.41 16 2 C 0.14 6.51 5.97 86.38 0.52 7.02 16 3 N -0.59 -28.83 1.69 -678.02 -1.14 -29.97 16 4 C -0.24 -12.80 8.22 84.04 0.69 -12.11 16 5 H 0.05 2.84 6.85 -2.91 -0.02 2.82 16 6 C -0.04 -2.46 4.93 84.86 0.42 -2.04 16 7 N -0.92 -54.50 11.40 21.65 0.25 -54.26 16 8 Si 0.95 45.45 29.61 68.60 2.03 47.48 16 9 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 10 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 11 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 12 C 0.18 7.28 2.07 44.99 0.09 7.38 16 13 H 0.05 1.95 7.81 -2.39 -0.02 1.93 16 14 C -0.11 -4.65 5.17 30.60 0.16 -4.49 16 15 C -0.11 -3.31 5.92 30.60 0.18 -3.13 16 16 C -0.11 -2.98 5.92 30.59 0.18 -2.80 16 17 C -0.10 -2.84 5.20 30.59 0.16 -2.68 16 18 C -0.09 -3.34 2.08 -10.80 -0.02 -3.36 16 19 H 0.04 1.70 6.98 -2.39 -0.02 1.68 16 20 C -0.13 -4.41 7.85 71.98 0.57 -3.85 16 21 H 0.03 1.38 7.94 -2.38 -0.02 1.36 16 22 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 23 H 0.06 2.08 5.85 -2.39 -0.01 2.06 16 24 H 0.06 3.37 5.39 -2.39 -0.01 3.36 16 25 H 0.02 0.90 7.95 -2.39 -0.02 0.88 16 26 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 27 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.03 1.61 7.66 -2.39 -0.02 1.59 16 29 H 0.06 1.70 8.14 -2.38 -0.02 1.69 16 30 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 35 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.05 1.88 5.55 -2.39 -0.01 1.86 16 37 H 0.05 1.58 7.57 -2.38 -0.02 1.56 16 Total: -1.00 -59.76 277.35 5.72 -54.04 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 1.01 Total: 8.17 kcal Atomic # 6 Polarization: -29.04 SS G_CDS: 3.58 Total: -25.46 kcal Atomic # 7 Polarization: -83.33 SS G_CDS: -0.90 Total: -84.23 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -59.76 5.72 -54.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307309069.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.566 kcal (2) G-P(sol) polarization free energy of solvation -59.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds