Wall clock time and date at job start Sun Mar 29 2020 21:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47294 * 180.02562 * 9 7 2 11 11 C 1.38172 * 120.01804 * 264.72735 * 10 9 7 12 12 C 1.38341 * 120.04210 * 179.72164 * 11 10 9 13 13 Cl 1.73595 * 119.96141 * 180.27272 * 12 11 10 14 14 C 1.38396 * 120.08196 * 0.55051 * 12 11 10 15 15 C 1.38121 * 120.04475 * 359.72353 * 14 12 11 16 16 C 1.38699 * 120.02422 * 84.99599 * 10 9 7 17 17 O 1.35919 * 120.04161 * 0.02562 * 16 10 9 18 18 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 20 20 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 21 21 H 1.07997 * 119.97724 * 359.97438 * 11 10 9 22 22 H 1.07997 * 119.97548 * 179.70038 * 14 12 11 23 23 H 1.07994 * 120.02130 * 179.97438 * 15 14 12 24 24 H 0.96703 * 114.00114 * 90.00055 * 17 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2303 -3.6446 -0.0015 11 6 2.5968 -4.2409 -1.1928 12 6 3.5001 -5.2887 -1.1936 13 17 3.9645 -6.0317 -2.6922 14 6 4.0296 -5.7491 -0.0008 15 6 3.6614 -5.1593 1.1927 16 6 2.7599 -4.1046 1.1951 17 8 2.3960 -3.5232 2.3685 18 1 -0.4849 0.8401 0.0004 19 1 0.6240 -2.5575 0.8880 20 1 0.6246 -2.5563 -0.8919 21 1 2.1809 -3.8861 -2.1242 22 1 4.7310 -6.5703 -0.0030 23 1 4.0745 -5.5191 2.1233 24 1 1.6219 -3.9271 2.7841 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307315053.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:46 Heat of formation + Delta-G solvation = -39.554209 kcal Electronic energy + Delta-G solvation = -11516.929828 eV Core-core repulsion = 9227.818833 eV Total energy + Delta-G solvation = -2289.110995 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.034 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.34461 -36.66919 -35.53753 -33.46983 -31.34706 -29.24185 -27.04315 -23.46756 -22.13757 -20.61518 -17.78275 -16.43091 -15.87972 -15.53260 -14.80130 -14.43832 -13.56493 -12.92814 -12.69366 -12.24010 -11.96269 -11.86876 -11.22706 -10.91905 -10.75217 -10.68189 -10.49777 -10.16262 -9.56832 -9.43211 -8.42645 -8.34469 -7.86937 -6.05074 -4.07394 1.53453 1.77333 2.46072 3.31648 3.37495 3.43006 4.00392 4.46167 4.74947 5.22506 5.31424 5.32002 5.74815 5.88512 6.11987 6.40127 6.52214 6.70545 6.88289 7.16206 7.46649 7.64708 7.90233 8.20593 8.30414 8.95350 9.55672 11.05267 Molecular weight = 212.03amu Principal moments of inertia in cm(-1) A = 0.035297 B = 0.008841 C = 0.007826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.075185 B = 3166.370684 C = 3577.011765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.503 4.503 8 H 0.056 0.944 9 C 0.055 3.945 10 C -0.049 4.049 11 C -0.102 4.102 12 C -0.042 4.042 13 Cl -0.089 7.089 14 C -0.124 4.124 15 C -0.139 4.139 16 C 0.106 3.894 17 O -0.482 6.482 18 H 0.262 0.738 19 H 0.034 0.966 20 H 0.030 0.970 21 H 0.133 0.867 22 H 0.126 0.874 23 H 0.128 0.872 24 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.807 -10.768 0.174 11.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.541 4.541 8 H 0.074 0.926 9 C 0.019 3.981 10 C -0.050 4.050 11 C -0.121 4.121 12 C -0.069 4.069 13 Cl -0.061 7.061 14 C -0.143 4.143 15 C -0.158 4.158 16 C 0.061 3.939 17 O -0.291 6.291 18 H 0.071 0.929 19 H 0.052 0.948 20 H 0.048 0.952 21 H 0.151 0.849 22 H 0.144 0.856 23 H 0.146 0.854 24 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 5.177 -10.342 -0.062 11.566 hybrid contribution 0.143 0.585 -0.027 0.602 sum 5.320 -9.757 -0.089 11.113 Atomic orbital electron populations 1.69950 1.05987 1.26821 1.50754 1.24970 0.94902 0.99222 0.95174 0.86513 0.79895 0.83057 0.78127 1.20615 1.21131 1.19793 1.20948 0.92961 0.89561 1.50667 0.92578 1.18262 0.92231 0.89132 0.98497 1.21063 0.97010 0.95968 0.90928 1.20935 0.97313 0.94702 0.99121 1.20893 1.01307 0.98277 0.86397 1.98323 1.91657 1.82156 1.33934 1.20632 1.01781 1.01420 0.90498 1.21264 1.00133 0.96469 0.97940 1.18434 0.96765 0.92537 0.86166 1.84904 1.50710 1.59283 1.34191 0.92861 0.94786 0.95225 0.84926 0.85603 0.85416 0.76326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.34 13.29 55.43 0.74 -25.60 14 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 14 3 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 14 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 14 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 14 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 14 7 C -0.50 -14.19 9.09 -34.44 -0.31 -14.50 14 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 14 9 C 0.06 1.40 4.83 -29.03 -0.14 1.26 14 10 C -0.05 -1.04 5.08 -104.48 -0.53 -1.57 14 11 C -0.10 -1.95 9.46 -39.57 -0.37 -2.33 14 12 C -0.04 -0.71 6.32 -39.49 -0.25 -0.96 14 13 Cl -0.09 -1.32 28.95 -51.86 -1.50 -2.82 14 14 C -0.12 -1.91 9.82 -39.57 -0.39 -2.29 14 15 C -0.14 -2.22 9.99 -39.44 -0.39 -2.62 14 16 C 0.11 2.02 6.68 -39.22 -0.26 1.76 14 17 O -0.48 -9.04 12.64 -19.49 -0.25 -9.28 14 18 H 0.26 7.28 8.31 -40.82 -0.34 6.94 14 19 H 0.03 0.89 7.69 -51.93 -0.40 0.49 14 20 H 0.03 0.78 8.05 -51.93 -0.42 0.36 14 21 H 0.13 2.49 8.06 -52.49 -0.42 2.07 14 22 H 0.13 1.58 8.06 -52.49 -0.42 1.16 14 23 H 0.13 1.69 8.06 -52.49 -0.42 1.27 14 24 H 0.38 5.19 9.06 45.56 0.41 5.60 14 LS Contribution 237.49 15.07 3.58 3.58 Total: -1.00 -30.46 237.49 -6.42 -36.88 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: -1.21 Total: 0.09 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: -2.75 Total: -19.69 kcal Atomic # 7 Polarization: -26.34 SS G_CDS: 0.74 Total: -25.60 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -0.25 Total: -9.28 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -1.50 Total: -2.82 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -30.46 -6.42 -36.88 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307315053.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.675 kcal (2) G-P(sol) polarization free energy of solvation -30.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds