Wall clock time and date at job start Sun Mar 29 2020 21:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47368 * 2 1 4 4 C 1.53000 * 109.47328 * 119.99788 * 2 1 3 5 5 C 1.52997 * 109.47060 * 60.00126 * 4 2 1 6 6 C 1.52999 * 109.47317 * 59.99960 * 5 4 2 7 7 C 1.53005 * 109.47159 * 300.00546 * 6 5 4 8 8 C 1.52997 * 109.47452 * 59.99536 * 7 6 5 9 9 C 1.53006 * 109.47127 * 59.99878 * 8 7 6 10 10 N 1.46899 * 109.47254 * 180.02562 * 8 7 6 11 11 C 1.46893 * 110.99919 * 300.00128 * 10 8 7 12 12 C 1.50703 * 109.47010 * 179.97438 * 11 10 8 13 13 H 1.07999 * 120.00164 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99834 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99628 * 180.02562 * 14 12 11 16 16 Si 1.86793 * 120.00359 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47539 * 89.99915 * 16 14 12 18 18 H 1.48497 * 109.47354 * 210.00015 * 16 14 12 19 19 H 1.48506 * 109.46861 * 329.99736 * 16 14 12 20 20 H 1.08992 * 109.47554 * 299.99850 * 1 2 3 21 21 H 1.09004 * 109.47108 * 60.00101 * 1 2 3 22 22 H 1.09000 * 109.46870 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47398 * 180.02562 * 4 2 1 24 24 H 1.09001 * 109.47194 * 300.00476 * 4 2 1 25 25 H 1.08996 * 109.47853 * 180.02562 * 5 4 2 26 26 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 27 27 H 1.09000 * 109.47486 * 180.02562 * 6 5 4 28 28 H 1.09002 * 109.46716 * 60.00091 * 6 5 4 29 29 H 1.09002 * 109.46935 * 299.99411 * 7 6 5 30 30 H 1.09001 * 109.46812 * 179.97438 * 7 6 5 31 31 H 1.09001 * 109.46801 * 300.00272 * 9 8 7 32 32 H 1.08998 * 109.46505 * 59.99871 * 9 8 7 33 33 H 1.09000 * 109.47050 * 180.02562 * 9 8 7 34 34 H 1.00900 * 110.99667 * 63.95815 * 10 8 7 35 35 H 1.09000 * 109.47408 * 299.99887 * 11 10 8 36 36 H 1.09006 * 109.47593 * 60.00012 * 11 10 8 37 37 H 0.97001 * 120.00055 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5301 -2.1637 1.2493 6 6 2.0400 -2.8850 0.0001 7 6 1.5301 -2.1637 -1.2492 8 6 2.0400 -0.7212 -1.2493 9 6 3.5701 -0.7212 -1.2492 10 7 1.5499 -0.0286 -2.4484 11 6 2.0204 -0.6945 -3.6702 12 6 1.4983 0.0422 -4.8768 13 1 0.8786 0.9174 -4.7487 14 6 1.8119 -0.4010 -6.1442 15 7 1.3566 0.2423 -7.1970 16 14 2.8832 -1.9151 -6.3658 17 1 2.0243 -3.1250 -6.4244 18 1 3.6554 -1.7946 -7.6284 19 1 3.8217 -2.0293 -5.2206 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1300 -0.7208 1.2495 24 1 1.6766 -0.2074 2.1392 25 1 1.8930 -2.6775 2.1394 26 1 0.4401 -2.1637 1.2493 27 1 1.6764 -3.9125 -0.0002 28 1 3.1300 -2.8849 0.0001 29 1 0.4401 -2.1637 -1.2493 30 1 1.8938 -2.6773 -2.1392 31 1 3.9333 -1.2350 -0.3591 32 1 3.9334 -1.2351 -2.1391 33 1 3.9334 0.3065 -1.2487 34 1 0.5434 0.0415 -2.4394 35 1 3.1103 -0.6944 -3.6875 36 1 1.6570 -1.7221 -3.6871 37 1 1.5769 -0.0697 -8.0887 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307364216.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:16 Heat of formation + Delta-G solvation = -19.971181 kcal Electronic energy + Delta-G solvation = -15101.104431 eV Core-core repulsion = 12877.351401 eV Total energy + Delta-G solvation = -2223.753030 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.83013 -34.77135 -32.40660 -31.79698 -29.71643 -28.40504 -26.43005 -24.54548 -22.33068 -21.61464 -20.18297 -17.48420 -16.92693 -15.67854 -15.19222 -14.63827 -14.06878 -13.76161 -13.33562 -12.94229 -12.77473 -12.53934 -12.35046 -12.05646 -11.75372 -11.62585 -11.36643 -11.03571 -10.82913 -10.76906 -10.63051 -10.40979 -10.07956 -9.73967 -9.71258 -9.52495 -9.17420 -8.56293 -7.33023 -6.03089 -3.99765 3.29289 3.36938 3.39729 4.44204 4.82025 4.88945 4.92352 5.29462 5.31117 5.36383 5.44717 5.51763 5.58278 5.63484 5.80657 5.81703 5.89243 6.11100 6.13392 6.15301 6.17914 6.22266 6.30175 6.37729 6.46733 6.53408 6.62907 6.72603 6.84114 6.94475 7.13163 7.69204 8.00048 8.43974 8.71439 9.05710 9.59700 11.10498 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.045312 B = 0.008803 C = 0.008111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.789288 B = 3179.962004 C = 3451.179396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.077 4.077 3 H 0.074 0.926 4 C -0.114 4.114 5 C -0.119 4.119 6 C -0.116 4.116 7 C -0.151 4.151 8 C 0.117 3.883 9 C -0.140 4.140 10 N -0.670 5.670 11 C 0.161 3.839 12 C -0.514 4.514 13 H 0.077 0.923 14 C 0.067 3.933 15 N -0.902 5.902 16 Si 0.876 3.124 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.267 1.267 20 H 0.048 0.952 21 H 0.061 0.939 22 H 0.056 0.944 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.334 0.666 35 H 0.029 0.971 36 H -0.018 1.018 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.260 -5.009 16.148 16.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.095 4.095 3 H 0.092 0.908 4 C -0.152 4.152 5 C -0.156 4.156 6 C -0.155 4.155 7 C -0.190 4.190 8 C 0.025 3.975 9 C -0.197 4.197 10 N -0.301 5.301 11 C 0.033 3.967 12 C -0.552 4.552 13 H 0.096 0.904 14 C -0.134 4.134 15 N -0.541 5.541 16 Si 0.704 3.296 17 H -0.204 1.204 18 H -0.212 1.212 19 H -0.191 1.191 20 H 0.067 0.933 21 H 0.080 0.920 22 H 0.074 0.926 23 H 0.082 0.918 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.153 0.847 35 H 0.047 0.953 36 H -0.001 1.001 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.773 -4.523 15.921 16.646 hybrid contribution -0.029 -1.647 -0.395 1.694 sum 1.744 -6.170 15.526 16.798 Atomic orbital electron populations 1.21958 0.95820 1.01619 1.01578 1.21063 0.95467 0.99486 0.93525 0.90755 1.21610 1.00708 0.95456 0.97453 1.21555 1.00852 0.95855 0.97376 1.21536 1.00806 0.98291 0.94821 1.22364 1.00792 0.98081 0.97801 1.20836 0.94950 0.90465 0.91220 1.21950 0.94845 1.01983 1.00956 1.60709 1.15715 1.52728 1.00926 1.20065 0.96250 0.92238 0.88150 1.21115 1.31890 1.13482 0.88702 0.90447 1.24902 0.95784 0.96778 0.95916 1.69904 1.45839 1.40309 0.98089 0.86843 0.81272 0.83743 0.77777 1.20418 1.21216 1.19135 0.93302 0.91957 0.92552 0.91827 0.92475 0.92767 0.91950 0.92845 0.91926 0.92065 0.91686 0.92811 0.92567 0.92276 0.84723 0.95301 1.00057 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.17 37.16 0.30 -1.71 16 2 C -0.08 -1.08 2.44 -90.62 -0.22 -1.30 16 3 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 4 C -0.11 -1.34 5.18 -26.73 -0.14 -1.48 16 5 C -0.12 -1.35 5.65 -26.73 -0.15 -1.50 16 6 C -0.12 -1.50 5.65 -26.73 -0.15 -1.65 16 7 C -0.15 -2.39 4.21 -26.73 -0.11 -2.50 16 8 C 0.12 1.95 0.47 -131.60 -0.06 1.89 16 9 C -0.14 -2.30 7.55 37.16 0.28 -2.02 16 10 N -0.67 -13.92 6.05 -101.22 -0.61 -14.54 16 11 C 0.16 3.92 3.72 -4.98 -0.02 3.91 16 12 C -0.51 -14.90 9.87 -34.44 -0.34 -15.24 16 13 H 0.08 2.44 8.06 -52.49 -0.42 2.01 16 14 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 15 N -0.90 -28.11 13.96 55.43 0.77 -27.33 16 16 Si 0.88 21.94 27.47 -169.99 -4.67 17.28 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 19 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 20 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.06 0.90 6.57 -51.93 -0.34 0.56 16 22 H 0.06 0.73 4.81 -51.93 -0.25 0.48 16 23 H 0.06 0.74 6.43 -51.93 -0.33 0.40 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.70 6.43 -51.93 -0.33 0.37 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.79 6.43 -51.93 -0.33 0.46 16 29 H 0.06 0.96 6.43 -51.93 -0.33 0.63 16 30 H 0.06 1.16 6.40 -51.93 -0.33 0.83 16 31 H 0.05 0.74 4.81 -51.93 -0.25 0.49 16 32 H 0.06 1.02 6.41 -51.93 -0.33 0.68 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.33 6.82 6.75 -39.29 -0.27 6.56 16 35 H 0.03 0.73 5.36 -51.93 -0.28 0.45 16 36 H -0.02 -0.44 5.73 -51.93 -0.30 -0.74 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 264.39 15.07 3.98 3.98 Total: -1.00 -30.08 264.39 -7.04 -37.12 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -5.81 Total: 3.20 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: -0.71 Total: -19.71 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: 0.16 Total: -41.87 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.08 -7.04 -37.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307364216.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.148 kcal (2) G-P(sol) polarization free energy of solvation -30.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds