Wall clock time and date at job start Sun Mar 29 2020 21:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47368 * 2 1 4 4 C 1.53000 * 109.47328 * 119.99788 * 2 1 3 5 5 C 1.52997 * 109.47060 * 60.00126 * 4 2 1 6 6 C 1.52999 * 109.47317 * 59.99960 * 5 4 2 7 7 C 1.53005 * 109.47159 * 300.00546 * 6 5 4 8 8 C 1.52997 * 109.47452 * 59.99536 * 7 6 5 9 9 C 1.53006 * 109.47127 * 59.99878 * 8 7 6 10 10 N 1.46899 * 109.47254 * 180.02562 * 8 7 6 11 11 C 1.46893 * 110.99919 * 300.00128 * 10 8 7 12 12 C 1.50703 * 109.47010 * 179.97438 * 11 10 8 13 13 H 1.07999 * 120.00164 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99834 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99628 * 180.02562 * 14 12 11 16 16 Si 1.86793 * 120.00359 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47539 * 89.99915 * 16 14 12 18 18 H 1.48497 * 109.47354 * 210.00015 * 16 14 12 19 19 H 1.48506 * 109.46861 * 329.99736 * 16 14 12 20 20 H 1.08992 * 109.47554 * 299.99850 * 1 2 3 21 21 H 1.09004 * 109.47108 * 60.00101 * 1 2 3 22 22 H 1.09000 * 109.46870 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47398 * 180.02562 * 4 2 1 24 24 H 1.09001 * 109.47194 * 300.00476 * 4 2 1 25 25 H 1.08996 * 109.47853 * 180.02562 * 5 4 2 26 26 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 27 27 H 1.09000 * 109.47486 * 180.02562 * 6 5 4 28 28 H 1.09002 * 109.46716 * 60.00091 * 6 5 4 29 29 H 1.09002 * 109.46935 * 299.99411 * 7 6 5 30 30 H 1.09001 * 109.46812 * 179.97438 * 7 6 5 31 31 H 1.09001 * 109.46801 * 300.00272 * 9 8 7 32 32 H 1.08998 * 109.46505 * 59.99871 * 9 8 7 33 33 H 1.09000 * 109.47050 * 180.02562 * 9 8 7 34 34 H 1.00900 * 110.99667 * 63.95815 * 10 8 7 35 35 H 1.09000 * 109.47408 * 299.99887 * 11 10 8 36 36 H 1.09006 * 109.47593 * 60.00012 * 11 10 8 37 37 H 0.97001 * 120.00055 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5301 -2.1637 1.2493 6 6 2.0400 -2.8850 0.0001 7 6 1.5301 -2.1637 -1.2492 8 6 2.0400 -0.7212 -1.2493 9 6 3.5701 -0.7212 -1.2492 10 7 1.5499 -0.0286 -2.4484 11 6 2.0204 -0.6945 -3.6702 12 6 1.4983 0.0422 -4.8768 13 1 0.8786 0.9174 -4.7487 14 6 1.8119 -0.4010 -6.1442 15 7 1.3566 0.2423 -7.1970 16 14 2.8832 -1.9151 -6.3658 17 1 2.0243 -3.1250 -6.4244 18 1 3.6554 -1.7946 -7.6284 19 1 3.8217 -2.0293 -5.2206 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1300 -0.7208 1.2495 24 1 1.6766 -0.2074 2.1392 25 1 1.8930 -2.6775 2.1394 26 1 0.4401 -2.1637 1.2493 27 1 1.6764 -3.9125 -0.0002 28 1 3.1300 -2.8849 0.0001 29 1 0.4401 -2.1637 -1.2493 30 1 1.8938 -2.6773 -2.1392 31 1 3.9333 -1.2350 -0.3591 32 1 3.9334 -1.2351 -2.1391 33 1 3.9334 0.3065 -1.2487 34 1 0.5434 0.0415 -2.4394 35 1 3.1103 -0.6944 -3.6875 36 1 1.6570 -1.7221 -3.6871 37 1 1.5769 -0.0697 -8.0887 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307364216.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:15 Heat of formation + Delta-G solvation = -39.843504 kcal Electronic energy + Delta-G solvation = -15101.966160 eV Core-core repulsion = 12877.351401 eV Total energy + Delta-G solvation = -2224.614759 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.05472 -36.35268 -34.46364 -32.90593 -31.30962 -29.58523 -28.26988 -25.69273 -23.99710 -22.80038 -21.60822 -19.22765 -18.46691 -17.21002 -16.57627 -16.13119 -15.67961 -15.16763 -14.71815 -14.60721 -14.11933 -13.89938 -13.79784 -13.47547 -13.08139 -12.93565 -12.72713 -12.49605 -12.41138 -12.06155 -11.94295 -11.84700 -11.69837 -11.38001 -11.07218 -10.85625 -10.78885 -10.75240 -8.99390 -8.31834 -6.34850 1.30399 1.32681 1.44117 2.31498 3.02270 3.48277 3.80390 3.82214 4.10276 4.24486 4.35419 4.43010 4.47409 4.54102 4.68538 4.78619 4.79549 4.80314 4.96293 5.02611 5.05178 5.08269 5.13460 5.20764 5.25396 5.28033 5.34076 5.44782 5.49376 5.56495 5.59124 5.74919 6.02486 6.62165 6.69415 6.83399 7.29950 8.85271 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.045312 B = 0.008803 C = 0.008111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.789288 B = 3179.962004 C = 3451.179396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.074 4.074 3 H 0.063 0.937 4 C -0.110 4.110 5 C -0.115 4.115 6 C -0.113 4.113 7 C -0.149 4.149 8 C 0.111 3.889 9 C -0.138 4.138 10 N -0.682 5.682 11 C 0.177 3.823 12 C -0.527 4.527 13 H 0.035 0.965 14 C 0.008 3.992 15 N -0.948 5.948 16 Si 0.948 3.052 17 H -0.266 1.266 18 H -0.279 1.279 19 H -0.252 1.252 20 H 0.069 0.931 21 H 0.041 0.959 22 H 0.061 0.939 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.040 0.960 31 H 0.084 0.916 32 H 0.034 0.966 33 H 0.050 0.950 34 H 0.333 0.667 35 H 0.025 0.975 36 H -0.015 1.015 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.160 -6.799 18.514 19.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.093 4.093 3 H 0.082 0.918 4 C -0.147 4.147 5 C -0.153 4.153 6 C -0.151 4.151 7 C -0.188 4.188 8 C 0.020 3.980 9 C -0.195 4.195 10 N -0.312 5.312 11 C 0.049 3.951 12 C -0.565 4.565 13 H 0.053 0.947 14 C -0.189 4.189 15 N -0.589 5.589 16 Si 0.771 3.229 17 H -0.191 1.191 18 H -0.205 1.205 19 H -0.175 1.175 20 H 0.088 0.912 21 H 0.060 0.940 22 H 0.079 0.921 23 H 0.086 0.914 24 H 0.095 0.905 25 H 0.096 0.904 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.103 0.897 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.151 0.849 35 H 0.043 0.957 36 H 0.002 0.998 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.671 -6.310 18.317 19.556 hybrid contribution -0.376 -0.989 -1.113 1.536 sum 2.295 -7.300 17.203 18.828 Atomic orbital electron populations 1.21933 0.95299 1.01928 1.01570 1.21042 0.95927 0.98908 0.93396 0.91841 1.21597 1.00972 0.95657 0.96513 1.21553 1.01031 0.95364 0.97323 1.21525 1.01008 0.98699 0.93831 1.22294 1.00593 0.97316 0.98595 1.21041 0.95223 0.91255 0.90451 1.21957 0.94535 1.01626 1.01429 1.60629 1.15731 1.53533 1.01331 1.19735 0.95579 0.91784 0.88044 1.21422 1.31475 1.12638 0.91012 0.94705 1.25858 0.97285 1.00395 0.95393 1.70055 1.47536 1.42479 0.98814 0.85700 0.79533 0.79328 0.78307 1.19147 1.20462 1.17549 0.91244 0.94042 0.92060 0.91375 0.90509 0.90413 0.91733 0.91702 0.91528 0.92352 0.94163 0.89727 0.94647 0.93055 0.84867 0.95714 0.99778 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 8.17 71.98 0.59 -3.14 16 2 C -0.07 -1.94 2.44 -10.79 -0.03 -1.96 16 3 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 4 C -0.11 -2.16 5.18 30.59 0.16 -2.00 16 5 C -0.12 -2.13 5.65 30.59 0.17 -1.96 16 6 C -0.11 -2.53 5.65 30.60 0.17 -2.35 16 7 C -0.15 -4.48 4.21 30.60 0.13 -4.35 16 8 C 0.11 3.59 0.47 3.53 0.00 3.60 16 9 C -0.14 -4.34 7.55 71.98 0.54 -3.79 16 10 N -0.68 -28.75 6.05 -474.15 -2.87 -31.62 16 11 C 0.18 8.75 3.72 85.56 0.32 9.07 16 12 C -0.53 -31.63 9.87 25.60 0.25 -31.38 16 13 H 0.03 2.31 8.06 -2.91 -0.02 2.29 16 14 C 0.01 0.48 5.47 84.66 0.46 0.94 16 15 N -0.95 -60.67 13.96 21.45 0.30 -60.37 16 16 Si 0.95 45.42 27.47 68.60 1.88 47.31 16 17 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 18 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 19 H -0.25 -11.36 6.54 99.48 0.65 -10.71 16 20 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 21 H 0.04 1.19 6.57 -2.38 -0.02 1.17 16 22 H 0.06 1.46 4.81 -2.39 -0.01 1.44 16 23 H 0.07 1.30 6.43 -2.39 -0.02 1.29 16 24 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.06 1.20 6.43 -2.39 -0.02 1.18 16 27 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.07 1.45 6.43 -2.39 -0.02 1.43 16 29 H 0.06 1.77 6.43 -2.39 -0.02 1.75 16 30 H 0.04 1.40 6.40 -2.39 -0.02 1.38 16 31 H 0.08 2.10 4.81 -2.39 -0.01 2.08 16 32 H 0.03 1.24 6.41 -2.39 -0.02 1.22 16 33 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.33 14.02 6.75 -89.69 -0.61 13.41 16 35 H 0.02 1.25 5.36 -2.39 -0.01 1.24 16 36 H -0.02 -0.74 5.73 -2.38 -0.01 -0.76 16 37 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -66.25 264.39 2.48 -63.77 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.39 Total: 18.26 kcal Atomic # 6 Polarization: -40.12 SS G_CDS: 2.77 Total: -37.35 kcal Atomic # 7 Polarization: -89.42 SS G_CDS: -2.57 Total: -91.99 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.88 Total: 47.31 kcal Total: -66.25 2.48 -63.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307364216.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.929 kcal (2) G-P(sol) polarization free energy of solvation -66.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds