Wall clock time and date at job start Sun Mar 29 2020 21:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31442 * 1 3 3 Si 1.86805 * 119.99893 * 2 1 4 4 H 1.48506 * 109.46778 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.47193 * 240.00295 * 3 2 1 6 6 H 1.48497 * 109.47116 * 120.00065 * 3 2 1 7 7 C 1.38754 * 120.00384 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00141 * 180.02562 * 7 2 1 9 9 O 1.34918 * 119.99638 * 359.97438 * 7 2 1 10 10 C 1.34307 * 116.99868 * 180.02562 * 9 7 2 11 11 O 1.21215 * 120.00036 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00358 * 179.97438 * 10 9 7 13 13 H 1.09004 * 115.56322 * 61.66367 * 12 10 9 14 14 C 1.53184 * 117.52665 * 207.52578 * 12 10 9 15 15 C 1.52104 * 59.77186 * 107.42417 * 14 12 10 16 16 C 1.53704 * 121.74780 * 111.08439 * 15 14 12 17 17 C 1.54696 * 103.69399 * 143.51831 * 16 15 14 18 18 O 1.44500 * 104.87086 * 23.83202 * 17 16 15 19 19 C 1.44641 * 105.46119 * 320.02618 * 18 17 16 20 20 H 0.97000 * 119.99460 * 179.97438 * 1 2 3 21 21 H 1.09006 * 117.52370 * 214.84551 * 14 12 10 22 22 H 1.09000 * 117.52285 * 0.02562 * 14 12 10 23 23 H 1.09003 * 110.58411 * 262.06733 * 16 15 14 24 24 H 1.09003 * 110.57978 * 24.81564 * 16 15 14 25 25 H 1.09001 * 110.36285 * 142.67640 * 17 16 15 26 26 H 1.09003 * 110.35997 * 264.98696 * 17 16 15 27 27 H 1.08994 * 110.41957 * 280.88761 * 19 18 17 28 28 H 1.09004 * 110.41449 * 158.43026 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 1.2833 2.7465 0.0006 5 1 3.1021 1.6965 -1.2125 6 1 3.1022 1.6965 1.2125 7 6 2.0083 -1.2016 -0.0005 8 1 3.0882 -1.2016 -0.0001 9 8 1.3337 -2.3700 -0.0005 10 6 2.0652 -3.4964 -0.0005 11 8 3.2757 -3.4329 -0.0010 12 6 1.3812 -4.8392 0.0000 13 1 0.7515 -5.0466 -0.8652 14 6 2.1335 -6.0167 0.6278 15 6 0.9393 -5.4025 1.3422 16 6 -0.3866 -6.1634 1.5019 17 6 -0.8848 -5.7408 2.9041 18 8 -0.2473 -4.4688 3.1564 19 6 1.0992 -4.6043 2.6457 20 1 -0.4849 -0.8401 -0.0004 21 1 1.9990 -6.9992 0.1753 22 1 3.1228 -5.8197 1.0407 23 1 -1.0982 -5.8584 0.7346 24 1 -0.2182 -7.2395 1.4608 25 1 -1.9690 -5.6279 2.9034 26 1 -0.5793 -6.4729 3.6517 27 1 1.7210 -5.1524 3.3534 28 1 1.5286 -3.6236 2.4409 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307410524.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:03 Heat of formation + Delta-G solvation = -130.067555 kcal Electronic energy + Delta-G solvation = -14259.461699 eV Core-core repulsion = 11661.549681 eV Total energy + Delta-G solvation = -2597.912018 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.088 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.69248 -40.36916 -37.85600 -36.67912 -34.32535 -31.38480 -28.63326 -27.54926 -25.30958 -23.81931 -21.78430 -20.73633 -20.09491 -18.47297 -17.69614 -17.37620 -16.75632 -16.45766 -16.01052 -15.61338 -15.34905 -14.61360 -13.87386 -13.51859 -13.47143 -13.13476 -13.06477 -12.47584 -12.38118 -12.02410 -11.95932 -11.93077 -11.56228 -11.30626 -10.83655 -10.80176 -10.71804 -9.08425 -6.48236 1.21771 1.44557 1.63635 1.77477 2.09426 2.43908 2.64916 2.91724 2.96629 3.30973 3.61316 3.68497 3.85318 4.17826 4.38042 4.40920 4.47444 4.51515 4.63818 4.73353 4.79457 4.92192 4.98134 5.08398 5.24572 5.76166 6.09677 6.31699 6.83204 7.56701 8.37601 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.039603 B = 0.009286 C = 0.008224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.845778 B = 3014.559831 C = 3403.660802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.027 4.027 3 Si 1.145 2.855 4 H -0.261 1.261 5 H -0.262 1.262 6 H -0.265 1.265 7 C -0.497 4.497 8 H 0.071 0.929 9 O -0.258 6.258 10 C 0.426 3.574 11 O -0.579 6.579 12 C -0.160 4.160 13 H 0.150 0.850 14 C -0.097 4.097 15 C -0.140 4.140 16 C -0.108 4.108 17 C 0.036 3.964 18 O -0.404 6.404 19 C 0.077 3.923 20 H 0.265 0.735 21 H 0.157 0.843 22 H 0.094 0.906 23 H 0.081 0.919 24 H 0.125 0.875 25 H 0.105 0.895 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.185 -13.492 3.419 13.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.226 4.226 3 Si 0.960 3.040 4 H -0.185 1.185 5 H -0.186 1.186 6 H -0.190 1.190 7 C -0.572 4.572 8 H 0.089 0.911 9 O -0.167 6.167 10 C 0.274 3.726 11 O -0.477 6.477 12 C -0.179 4.179 13 H 0.168 0.832 14 C -0.133 4.133 15 C -0.141 4.141 16 C -0.145 4.145 17 C -0.039 4.039 18 O -0.324 6.324 19 C 0.000 4.000 20 H 0.074 0.926 21 H 0.174 0.826 22 H 0.113 0.887 23 H 0.100 0.900 24 H 0.143 0.857 25 H 0.123 0.877 26 H 0.105 0.895 27 H 0.110 0.890 28 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.217 -11.628 3.530 12.213 hybrid contribution 0.389 -1.498 -0.273 1.571 sum -0.828 -13.126 3.256 13.549 Atomic orbital electron populations 1.70668 1.07389 1.30509 1.44402 1.28480 0.96852 1.04570 0.92690 0.82618 0.73888 0.68823 0.78692 1.18516 1.18649 1.18958 1.22287 0.93306 0.82757 1.58900 0.91148 1.83670 1.41196 1.14788 1.77017 1.23321 0.86073 0.87059 0.76102 1.90510 1.17024 1.88453 1.51669 1.21817 1.06607 0.88672 1.00805 0.83242 1.23165 0.95195 0.96260 0.98683 1.22401 0.99322 1.01213 0.91129 1.22506 0.92337 1.01677 0.98003 1.23782 0.99260 0.84835 0.96065 1.89197 1.25107 1.36099 1.81956 1.22774 0.85319 0.98636 0.93278 0.92621 0.82560 0.88741 0.90010 0.85713 0.87669 0.89505 0.88959 0.93896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -56.53 13.69 21.62 0.30 -56.23 15 2 C -0.03 -1.61 5.49 84.87 0.47 -1.14 15 3 Si 1.15 50.71 29.92 68.60 2.05 52.76 15 4 H -0.26 -10.96 7.11 99.48 0.71 -10.25 15 5 H -0.26 -10.70 7.11 99.48 0.71 -10.00 15 6 H -0.26 -10.94 7.11 99.48 0.71 -10.24 15 7 C -0.50 -31.72 9.64 67.94 0.66 -31.07 15 8 H 0.07 4.59 6.86 -2.91 -0.02 4.57 15 9 O -0.26 -15.85 9.15 14.92 0.14 -15.72 15 10 C 0.43 22.44 6.19 71.23 0.44 22.88 15 11 O -0.58 -33.20 15.85 20.76 0.33 -32.87 15 12 C -0.16 -5.91 6.18 -11.77 -0.07 -5.98 15 13 H 0.15 4.77 8.14 -2.38 -0.02 4.76 15 14 C -0.10 -2.57 9.82 30.36 0.30 -2.27 15 15 C -0.14 -4.23 2.50 -52.30 -0.13 -4.36 15 16 C -0.11 -2.31 6.88 31.41 0.22 -2.10 15 17 C 0.04 0.85 7.65 72.56 0.56 1.40 15 18 O -0.40 -14.75 11.65 -148.98 -1.74 -16.49 15 19 C 0.08 2.76 7.28 72.21 0.53 3.29 15 20 H 0.27 17.27 7.97 -92.71 -0.74 16.53 15 21 H 0.16 2.62 8.14 -2.38 -0.02 2.60 15 22 H 0.09 2.81 7.94 -2.39 -0.02 2.79 15 23 H 0.08 1.78 8.14 -2.39 -0.02 1.76 15 24 H 0.12 1.63 8.14 -2.39 -0.02 1.61 15 25 H 0.11 2.12 8.14 -2.39 -0.02 2.10 15 26 H 0.09 1.53 8.14 -2.39 -0.02 1.51 15 27 H 0.09 2.73 8.14 -2.39 -0.02 2.71 15 28 H 0.04 1.99 6.88 -2.38 -0.02 1.97 15 Total: -1.00 -80.70 249.87 5.22 -75.48 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 1.19 Total: 12.42 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: 2.95 Total: -19.36 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: 0.30 Total: -56.23 kcal Atomic # 8 Polarization: -63.80 SS G_CDS: -1.27 Total: -65.07 kcal Atomic # 14 Polarization: 50.71 SS G_CDS: 2.05 Total: 52.76 kcal Total: -80.70 5.22 -75.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307410524.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.591 kcal (2) G-P(sol) polarization free energy of solvation -80.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds