Wall clock time and date at job start Sun Mar 29 2020 21:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31444 * 1 3 3 Si 1.86796 * 119.99468 * 2 1 4 4 H 1.48506 * 109.47393 * 269.99551 * 3 2 1 5 5 H 1.48506 * 109.47524 * 29.99890 * 3 2 1 6 6 H 1.48501 * 109.47048 * 149.99794 * 3 2 1 7 7 C 1.38748 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99866 * 359.72915 * 7 2 1 9 9 O 1.34924 * 119.99822 * 180.02562 * 7 2 1 10 10 C 1.34309 * 117.00044 * 179.72786 * 9 7 2 11 11 O 1.21218 * 119.99774 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00154 * 179.97438 * 10 9 7 13 13 H 1.08998 * 115.56003 * 34.22798 * 12 10 9 14 14 C 1.53175 * 117.52194 * 248.37586 * 12 10 9 15 15 C 1.52134 * 117.52266 * 179.97438 * 12 10 9 16 16 C 1.54032 * 121.46421 * 356.56120 * 15 12 10 17 17 C 1.55184 * 101.82796 * 195.73882 * 16 15 12 18 18 O 1.44450 * 103.63421 * 36.32081 * 17 16 15 19 19 C 1.43993 * 107.04785 * 320.42744 * 18 17 16 20 20 H 0.96995 * 120.00248 * 0.02562 * 1 2 3 21 21 H 1.09000 * 117.52315 * 359.97438 * 14 12 10 22 22 H 1.08998 * 117.52474 * 145.15096 * 14 12 10 23 23 H 1.08999 * 110.95932 * 313.86430 * 16 15 12 24 24 H 1.08998 * 110.96141 * 77.59770 * 16 15 12 25 25 H 1.09004 * 110.58910 * 277.77830 * 17 16 15 26 26 H 1.09005 * 110.72385 * 154.92727 * 17 16 15 27 27 H 1.08997 * 109.97514 * 266.94788 * 19 18 17 28 28 H 1.09001 * 109.96941 * 145.67372 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4959 2.0465 -1.4001 5 1 1.4457 2.6528 0.7000 6 1 3.5458 1.4403 0.7001 7 6 2.0082 -1.2016 0.0005 8 1 1.4682 -2.1368 0.0054 9 8 3.3575 -1.2015 0.0011 10 6 3.9673 -2.3981 0.0072 11 8 3.3071 -3.4148 0.0116 12 6 5.4722 -2.4770 0.0076 13 1 5.9844 -1.6868 0.5566 14 6 6.1529 -3.0204 -1.2524 15 6 6.1037 -3.8610 0.0154 16 6 5.2443 -5.1364 0.1014 17 6 6.2999 -6.2058 0.4892 18 8 7.1943 -5.4961 1.3740 19 6 7.3641 -4.1734 0.8308 20 1 -0.4850 0.8400 -0.0004 21 1 5.5120 -3.3212 -2.0812 22 1 7.1131 -2.5876 -1.5327 23 1 4.4827 -5.0419 0.8755 24 1 4.7914 -5.3672 -0.8628 25 1 6.8330 -6.5563 -0.3947 26 1 5.8300 -7.0412 1.0082 27 1 8.2416 -4.1459 0.1849 28 1 7.4733 -3.4503 1.6390 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307410527.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:05 Heat of formation + Delta-G solvation = -96.212542 kcal Electronic energy + Delta-G solvation = -14061.925344 eV Core-core repulsion = 11465.481389 eV Total energy + Delta-G solvation = -2596.443955 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.088 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.17231 -38.73715 -36.25810 -34.77833 -32.31354 -30.14656 -27.63696 -25.91169 -23.47800 -22.53926 -20.27865 -18.95998 -17.94427 -16.88295 -15.92834 -15.86371 -15.09464 -14.95973 -14.56568 -13.91191 -13.34030 -12.97645 -12.63620 -12.35525 -12.27576 -11.74691 -11.35199 -11.30274 -10.82259 -10.61826 -10.38939 -10.14712 -9.88518 -9.70359 -9.56961 -9.01170 -8.69197 -6.38339 -4.13913 2.98822 3.22808 3.25943 3.36640 3.77775 3.97677 4.02271 4.23889 4.71986 4.78250 4.95257 5.07326 5.16762 5.29037 5.50391 5.60918 5.65452 5.69069 5.77676 5.91653 6.04646 6.20082 6.42350 6.54169 6.87782 7.72727 8.02474 8.60845 9.00171 9.68836 10.70113 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.059264 B = 0.007695 C = 0.007180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.352202 B = 3637.815399 C = 3898.748925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.066 3.934 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.381 4.381 8 H 0.109 0.891 9 O -0.248 6.248 10 C 0.437 3.563 11 O -0.534 6.534 12 C -0.130 4.130 13 H 0.127 0.873 14 C -0.137 4.137 15 C -0.139 4.139 16 C -0.106 4.106 17 C 0.044 3.956 18 O -0.380 6.380 19 C 0.087 3.913 20 H 0.279 0.721 21 H 0.104 0.896 22 H 0.106 0.894 23 H 0.097 0.903 24 H 0.082 0.918 25 H 0.057 0.943 26 H 0.091 0.909 27 H 0.064 0.936 28 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.879 -5.228 -1.094 14.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.138 4.138 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.457 4.457 8 H 0.127 0.873 9 O -0.156 6.156 10 C 0.283 3.717 11 O -0.429 6.429 12 C -0.149 4.149 13 H 0.145 0.855 14 C -0.174 4.174 15 C -0.139 4.139 16 C -0.143 4.143 17 C -0.032 4.032 18 O -0.299 6.299 19 C 0.010 3.990 20 H 0.090 0.910 21 H 0.122 0.878 22 H 0.124 0.876 23 H 0.116 0.884 24 H 0.100 0.900 25 H 0.075 0.925 26 H 0.109 0.891 27 H 0.082 0.918 28 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 13.598 -5.433 -0.893 14.670 hybrid contribution 0.005 0.995 -0.226 1.020 sum 13.603 -4.438 -1.120 14.352 Atomic orbital electron populations 1.69606 1.05707 1.28422 1.47652 1.24544 0.95006 0.98694 0.95543 0.86210 0.80290 0.81480 0.78922 1.19850 1.20752 1.18420 1.20652 0.76122 0.96971 1.51947 0.87314 1.83500 1.23907 1.31256 1.76945 1.21834 0.88720 0.82607 0.78568 1.90574 1.66585 1.36082 1.49658 1.21542 0.91216 0.97892 1.04282 0.85537 1.23016 1.01919 1.01304 0.91117 1.22210 0.98082 0.92690 1.00927 1.22601 0.96993 0.90500 1.04229 1.23684 0.90333 0.95656 0.93556 1.88888 1.67535 1.24401 1.49043 1.22499 0.94435 0.85231 0.96813 0.91022 0.87761 0.87556 0.88444 0.89958 0.92473 0.89059 0.91790 0.89465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.01 13.96 55.48 0.77 -25.23 15 2 C 0.07 1.90 5.49 -17.53 -0.10 1.80 15 3 Si 0.91 21.51 28.62 -169.99 -4.86 16.64 15 4 H -0.27 -6.31 7.11 56.52 0.40 -5.90 15 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 6 H -0.26 -6.06 7.11 56.52 0.40 -5.66 15 7 C -0.38 -11.40 10.10 30.92 0.31 -11.09 15 8 H 0.11 3.57 7.09 -52.49 -0.37 3.20 15 9 O -0.25 -6.61 8.58 -20.71 -0.18 -6.78 15 10 C 0.44 10.27 7.69 36.01 0.28 10.55 15 11 O -0.53 -13.72 13.02 -19.06 -0.25 -13.97 15 12 C -0.13 -2.24 6.20 -92.12 -0.57 -2.81 15 13 H 0.13 1.90 8.14 -51.93 -0.42 1.48 15 14 C -0.14 -1.88 10.01 -27.05 -0.27 -2.15 15 15 C -0.14 -2.05 2.44 -154.65 -0.38 -2.43 15 16 C -0.11 -1.65 5.16 -25.04 -0.13 -1.78 15 17 C 0.04 0.56 7.73 38.31 0.30 0.86 15 18 O -0.38 -5.51 11.53 -35.23 -0.41 -5.92 15 19 C 0.09 1.11 7.50 37.33 0.28 1.39 15 20 H 0.28 7.58 8.31 -40.82 -0.34 7.24 15 21 H 0.10 1.50 8.14 -51.93 -0.42 1.08 15 22 H 0.11 1.12 8.14 -51.93 -0.42 0.70 15 23 H 0.10 1.80 6.89 -51.93 -0.36 1.44 15 24 H 0.08 1.28 8.13 -51.93 -0.42 0.86 15 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 15 26 H 0.09 1.04 8.14 -51.93 -0.42 0.62 15 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 15 28 H 0.09 1.04 8.14 -51.93 -0.42 0.61 15 LS Contribution 246.76 15.07 3.72 3.72 Total: -1.00 -32.39 246.76 -4.73 -37.12 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -3.25 Total: 0.08 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -0.28 Total: -5.65 kcal Atomic # 7 Polarization: -26.01 SS G_CDS: 0.77 Total: -25.23 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.83 Total: -26.68 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.86 Total: 16.64 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -32.39 -4.73 -37.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307410527.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.095 kcal (2) G-P(sol) polarization free energy of solvation -32.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds