Wall clock time and date at job start Sun Mar 29 2020 21:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31440 * 1 3 3 Si 1.86805 * 119.99992 * 2 1 4 4 H 1.48496 * 109.47412 * 270.00077 * 3 2 1 5 5 H 1.48499 * 109.46956 * 30.00408 * 3 2 1 6 6 H 1.48500 * 109.46937 * 149.99918 * 3 2 1 7 7 C 1.38753 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99780 * 0.02562 * 7 2 1 9 9 O 1.34918 * 120.00414 * 179.97438 * 7 2 1 10 10 C 1.34313 * 117.00058 * 180.02562 * 9 7 2 11 11 O 1.21210 * 119.99980 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99880 * 180.02562 * 10 9 7 13 13 H 1.08999 * 115.56762 * 325.81584 * 12 10 9 14 14 C 1.53256 * 117.52683 * 111.72260 * 12 10 9 15 15 C 1.51796 * 117.52898 * 179.97438 * 12 10 9 16 16 C 1.54212 * 121.93890 * 3.96057 * 15 12 10 17 17 C 1.55149 * 100.75891 * 176.38646 * 16 15 12 18 18 O 1.43749 * 105.30823 * 324.72796 * 17 16 15 19 19 C 1.43555 * 109.96748 * 24.27512 * 18 17 16 20 20 H 0.97000 * 119.99897 * 0.02562 * 1 2 3 21 21 H 1.08997 * 117.53057 * 0.02562 * 14 12 10 22 22 H 1.08995 * 117.52857 * 214.79822 * 14 12 10 23 23 H 1.09001 * 111.15796 * 58.50709 * 16 15 12 24 24 H 1.09005 * 111.15612 * 294.26364 * 16 15 12 25 25 H 1.08994 * 110.28068 * 205.76604 * 17 16 15 26 26 H 1.09006 * 110.35689 * 83.72204 * 17 16 15 27 27 H 1.08994 * 109.89488 * 116.80422 * 19 18 17 28 28 H 1.09003 * 109.89297 * 238.01882 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 2.4959 2.0465 -1.4000 5 1 1.4459 2.6527 0.7001 6 1 3.5460 1.4402 0.7001 7 6 2.0082 -1.2016 -0.0005 8 1 1.4682 -2.1370 -0.0014 9 8 3.3574 -1.2016 -0.0011 10 6 3.9672 -2.3984 -0.0021 11 8 3.3070 -3.4149 -0.0030 12 6 5.4721 -2.4772 -0.0022 13 1 5.9844 -1.6891 -0.5539 14 6 6.1531 -3.0177 1.2599 15 6 6.1023 -3.8582 -0.0027 16 6 5.2533 -5.1423 -0.0937 17 6 6.3661 -6.2219 -0.1514 18 8 7.4352 -5.6250 -0.9045 19 6 7.3540 -4.1941 -0.8214 20 1 -0.4850 0.8401 -0.0004 21 1 5.5123 -3.3164 2.0895 22 1 7.1137 -2.5848 1.5387 23 1 4.6491 -5.1511 -1.0009 24 1 4.6307 -5.2659 0.7925 25 1 6.0002 -7.1150 -0.6577 26 1 6.7056 -6.4706 0.8542 27 1 8.2398 -3.8007 -0.3230 28 1 7.2684 -3.7688 -1.8214 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307410979.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:08 Heat of formation + Delta-G solvation = -118.588211 kcal Electronic energy + Delta-G solvation = -14052.645968 eV Core-core repulsion = 11455.231732 eV Total energy + Delta-G solvation = -2597.414237 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.088 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.69400 -40.36391 -37.81650 -36.50332 -34.52287 -31.37008 -29.02296 -27.82427 -25.13964 -23.47396 -21.81750 -20.51012 -20.06003 -18.64338 -17.25728 -17.07010 -16.79204 -16.59480 -15.98468 -15.76228 -14.77928 -14.45560 -14.27198 -13.93881 -13.60214 -13.27170 -13.22403 -12.51975 -12.43233 -12.30668 -11.93538 -11.88427 -11.47910 -11.16440 -10.90952 -10.85030 -10.46862 -8.57251 -6.44424 1.21052 1.32664 1.46055 1.55051 2.18699 2.28147 2.59387 2.87398 2.92736 3.44798 3.55147 3.72512 3.99069 4.22090 4.30666 4.42101 4.51350 4.71907 4.74983 4.79523 4.87343 4.95709 5.05834 5.15430 5.46302 5.86896 5.95100 6.50963 6.79918 7.57959 8.55752 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.062014 B = 0.007603 C = 0.007073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.400343 B = 3681.763463 C = 3957.951177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.015 3.985 3 Si 0.986 3.014 4 H -0.260 1.260 5 H -0.265 1.265 6 H -0.249 1.249 7 C -0.410 4.410 8 H 0.056 0.944 9 O -0.256 6.256 10 C 0.433 3.567 11 O -0.565 6.565 12 C -0.149 4.149 13 H 0.158 0.842 14 C -0.107 4.107 15 C -0.139 4.139 16 C -0.110 4.110 17 C 0.058 3.942 18 O -0.400 6.400 19 C 0.095 3.905 20 H 0.290 0.710 21 H 0.093 0.907 22 H 0.154 0.846 23 H 0.059 0.941 24 H 0.072 0.928 25 H 0.094 0.906 26 H 0.079 0.921 27 H 0.104 0.896 28 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.758 -3.712 1.293 17.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.185 4.185 3 Si 0.805 3.195 4 H -0.184 1.184 5 H -0.190 1.190 6 H -0.172 1.172 7 C -0.485 4.485 8 H 0.074 0.926 9 O -0.165 6.165 10 C 0.281 3.719 11 O -0.461 6.461 12 C -0.168 4.168 13 H 0.176 0.824 14 C -0.144 4.144 15 C -0.139 4.139 16 C -0.148 4.148 17 C -0.018 4.018 18 O -0.319 6.319 19 C 0.019 3.981 20 H 0.100 0.900 21 H 0.112 0.888 22 H 0.172 0.828 23 H 0.077 0.923 24 H 0.090 0.910 25 H 0.112 0.888 26 H 0.097 0.903 27 H 0.122 0.878 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 16.531 -3.980 1.182 17.044 hybrid contribution -1.141 0.446 -0.033 1.226 sum 15.390 -3.534 1.148 15.832 Atomic orbital electron populations 1.69707 1.07645 1.30283 1.48124 1.25604 0.95987 1.02830 0.94056 0.85044 0.79046 0.75579 0.79836 1.18433 1.18971 1.17218 1.20314 0.77761 0.95743 1.54729 0.92638 1.83510 1.21913 1.32769 1.78297 1.23288 0.91463 0.81342 0.75830 1.90574 1.68220 1.37000 1.50307 1.21557 0.86404 1.00485 1.08309 0.82426 1.23193 1.02895 0.98776 0.89515 1.22262 0.98407 0.90966 1.02286 1.22547 0.96930 0.92609 1.02697 1.23495 0.85425 0.95846 0.97010 1.88417 1.50909 1.19112 1.73512 1.22563 0.94870 0.81124 0.99556 0.90044 0.88820 0.82778 0.92267 0.90962 0.88764 0.90315 0.87805 0.90081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.90 13.96 21.62 0.30 -55.60 15 2 C 0.02 0.88 5.49 84.87 0.47 1.35 15 3 Si 0.99 43.61 28.62 68.60 1.96 45.57 15 4 H -0.26 -10.89 7.11 99.48 0.71 -10.18 15 5 H -0.27 -10.92 7.11 99.48 0.71 -10.21 15 6 H -0.25 -10.49 7.11 99.48 0.71 -9.78 15 7 C -0.41 -25.49 10.10 67.94 0.69 -24.80 15 8 H 0.06 3.93 7.09 -2.91 -0.02 3.91 15 9 O -0.26 -13.77 8.58 14.86 0.13 -13.65 15 10 C 0.43 20.58 7.69 71.24 0.55 21.13 15 11 O -0.57 -30.40 13.20 20.77 0.27 -30.12 15 12 C -0.15 -4.75 6.22 -11.85 -0.07 -4.82 15 13 H 0.16 4.08 8.14 -2.39 -0.02 4.06 15 14 C -0.11 -2.59 10.03 30.28 0.30 -2.28 15 15 C -0.14 -3.76 2.27 -52.47 -0.12 -3.88 15 16 C -0.11 -3.40 5.00 31.74 0.16 -3.24 15 17 C 0.06 1.38 7.79 72.72 0.57 1.95 15 18 O -0.40 -10.22 11.38 -148.98 -1.69 -11.92 15 19 C 0.09 2.08 7.65 72.08 0.55 2.63 15 20 H 0.29 15.85 8.31 -92.71 -0.77 15.08 15 21 H 0.09 2.51 8.14 -2.39 -0.02 2.49 15 22 H 0.15 2.35 8.14 -2.39 -0.02 2.33 15 23 H 0.06 2.15 7.70 -2.39 -0.02 2.13 15 24 H 0.07 2.43 7.70 -2.38 -0.02 2.42 15 25 H 0.09 2.01 8.14 -2.39 -0.02 1.99 15 26 H 0.08 1.58 8.14 -2.38 -0.02 1.56 15 27 H 0.10 1.65 8.12 -2.39 -0.02 1.63 15 28 H 0.08 1.71 8.14 -2.39 -0.02 1.70 15 Total: -1.00 -73.78 247.06 5.22 -68.56 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: 1.16 Total: 9.12 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: 3.09 Total: -11.97 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: 0.30 Total: -55.60 kcal Atomic # 8 Polarization: -54.39 SS G_CDS: -1.29 Total: -55.68 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.96 Total: 45.57 kcal Total: -73.78 5.22 -68.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307410979.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.028 kcal (2) G-P(sol) polarization free energy of solvation -73.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds