Wall clock time and date at job start Sun Mar 29 2020 21:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47779 * 2 1 4 4 C 1.53002 * 109.47453 * 239.99708 * 2 1 3 5 5 C 1.53000 * 109.46763 * 60.00108 * 4 2 1 6 6 C 1.53006 * 109.47177 * 180.02562 * 5 4 2 7 7 C 1.53006 * 109.46693 * 300.00095 * 6 5 4 8 8 C 1.52996 * 109.47047 * 59.99979 * 7 6 5 9 9 C 1.52994 * 109.47421 * 299.99888 * 8 7 6 10 10 N 1.46500 * 109.47307 * 120.00045 * 2 1 3 11 11 C 1.46504 * 120.00081 * 59.99288 * 10 2 1 12 12 C 1.36936 * 120.00192 * 240.00119 * 10 2 1 13 13 H 1.08005 * 119.99816 * 23.12317 * 12 10 2 14 14 C 1.38816 * 119.99919 * 203.11739 * 12 10 2 15 15 N 1.31614 * 120.00231 * 11.68410 * 14 12 10 16 16 Si 1.86803 * 119.99681 * 191.68756 * 14 12 10 17 17 H 1.48492 * 109.47311 * 90.00335 * 16 14 12 18 18 H 1.48500 * 109.46795 * 210.00062 * 16 14 12 19 19 H 1.48500 * 109.47000 * 329.99822 * 16 14 12 20 20 H 1.08999 * 109.47374 * 300.00265 * 1 2 3 21 21 H 1.09003 * 109.46724 * 60.00103 * 1 2 3 22 22 H 1.09001 * 109.47263 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47127 * 300.00378 * 4 2 1 24 24 H 1.09001 * 109.47079 * 60.00241 * 5 4 2 25 25 H 1.09001 * 109.47593 * 300.00015 * 5 4 2 26 26 H 1.09000 * 109.46712 * 59.99716 * 6 5 4 27 27 H 1.08995 * 109.47095 * 180.02562 * 6 5 4 28 28 H 1.09003 * 109.46429 * 180.02562 * 7 6 5 29 29 H 1.08991 * 109.47325 * 299.99894 * 7 6 5 30 30 H 1.09001 * 109.47205 * 59.99865 * 8 7 6 31 31 H 1.09000 * 109.46816 * 179.97438 * 8 7 6 32 32 H 1.08998 * 109.47734 * 180.02562 * 9 8 7 33 33 H 1.09001 * 109.46912 * 300.00156 * 9 8 7 34 34 H 1.09005 * 109.46971 * 93.98279 * 11 10 2 35 35 H 1.08998 * 109.47448 * 213.98431 * 11 10 2 36 36 H 1.09005 * 109.46971 * 333.98948 * 11 10 2 37 37 H 0.96998 * 119.99745 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5301 -0.0001 -2.4984 6 6 2.0396 -0.7217 -3.7477 7 6 3.5697 -0.7222 -3.7479 8 6 4.0795 -1.4434 -2.4987 9 6 3.5700 -0.7219 -1.2495 10 7 2.0183 -0.6906 1.1961 11 6 1.6643 -2.0932 1.4281 12 6 2.8056 -0.0251 2.0975 13 1 2.7705 1.0529 2.1526 14 6 3.6486 -0.7362 2.9406 15 7 3.8672 -2.0162 2.7261 16 14 4.4727 0.1238 4.3796 17 1 3.6014 0.0285 5.5782 18 1 5.7775 -0.5262 4.6633 19 1 4.6947 1.5526 4.0412 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.6767 -1.7490 -1.2492 24 1 1.8934 1.0276 -2.4984 25 1 0.4401 0.0000 -2.4985 26 1 1.6759 -1.7492 -3.7474 27 1 1.6767 -0.2076 -4.6377 28 1 3.9326 -1.2359 -4.6382 29 1 3.9333 0.3053 -3.7481 30 1 3.7158 -2.4710 -2.4985 31 1 5.1695 -1.4442 -2.4991 32 1 3.9336 -1.2354 -0.3594 33 1 3.9337 0.3056 -1.2497 34 1 2.4510 -2.7365 1.0337 35 1 1.5544 -2.2680 2.4983 36 1 0.7242 -2.3186 0.9246 37 1 4.4565 -2.5129 3.3150 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307413571.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:37 Heat of formation + Delta-G solvation = -22.937683 kcal Electronic energy + Delta-G solvation = -15156.455958 eV Core-core repulsion = 12932.574291 eV Total energy + Delta-G solvation = -2223.881667 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.97362 -37.23692 -34.28415 -31.88064 -31.29267 -29.43773 -27.97955 -25.42402 -23.43509 -23.10341 -20.79761 -20.22627 -18.69163 -17.00249 -16.40114 -15.75592 -15.19035 -14.85666 -14.79649 -14.46552 -14.21867 -13.88920 -13.44612 -13.09665 -12.88724 -12.72613 -12.49966 -12.32093 -12.28418 -12.08960 -11.95891 -11.87225 -11.74195 -11.46673 -11.12954 -10.79685 -10.70626 -10.50498 -8.66456 -7.75982 -5.22274 1.45341 1.46271 1.54530 2.53216 3.36344 3.70923 3.86597 4.03336 4.10884 4.32668 4.49001 4.59720 4.65496 4.68939 4.76500 4.77767 4.83266 4.93404 4.95276 5.04696 5.15579 5.24687 5.31066 5.32557 5.35948 5.40643 5.47224 5.49350 5.61898 5.67912 5.78610 5.79718 5.83609 6.40131 7.22625 7.97520 8.41689 9.26559 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.036937 B = 0.009751 C = 0.008747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.868802 B = 2870.688070 C = 3200.315267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.167 3.833 3 H 0.048 0.952 4 C -0.085 4.085 5 C -0.108 4.108 6 C -0.114 4.114 7 C -0.112 4.112 8 C -0.115 4.115 9 C -0.096 4.096 10 N -0.606 5.606 11 C 0.185 3.815 12 C -0.251 4.251 13 H 0.064 0.936 14 C -0.053 4.053 15 N -0.936 5.936 16 Si 0.961 3.039 17 H -0.289 1.289 18 H -0.297 1.297 19 H -0.270 1.270 20 H 0.039 0.961 21 H 0.078 0.922 22 H 0.046 0.954 23 H 0.046 0.954 24 H 0.059 0.941 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.031 0.969 33 H 0.040 0.960 34 H -0.001 1.001 35 H 0.010 0.990 36 H 0.025 0.975 37 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.299 3.065 -12.026 13.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.060 3.940 3 H 0.067 0.933 4 C -0.106 4.106 5 C -0.146 4.146 6 C -0.151 4.151 7 C -0.149 4.149 8 C -0.152 4.152 9 C -0.134 4.134 10 N -0.329 5.329 11 C 0.040 3.960 12 C -0.382 4.382 13 H 0.082 0.918 14 C -0.248 4.248 15 N -0.584 5.584 16 Si 0.790 3.210 17 H -0.216 1.216 18 H -0.224 1.224 19 H -0.195 1.195 20 H 0.058 0.942 21 H 0.097 0.903 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.078 0.922 25 H 0.093 0.907 26 H 0.076 0.924 27 H 0.098 0.902 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.017 0.983 35 H 0.029 0.971 36 H 0.043 0.957 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.208 2.971 -11.930 12.995 hybrid contribution 0.841 -0.005 1.387 1.622 sum -3.367 2.966 -10.543 11.459 Atomic orbital electron populations 1.22189 0.96450 1.01158 1.01242 1.20650 0.93083 0.94684 0.85554 0.93341 1.21490 0.94867 0.98924 0.95288 1.21618 1.00688 0.98980 0.93342 1.21518 0.95192 1.00644 0.97751 1.21507 0.96270 1.00425 0.96746 1.21506 0.99549 0.99010 0.95170 1.21262 0.96178 0.99006 0.96973 1.44103 1.57544 1.09393 1.21855 1.20375 0.93966 0.84870 0.96814 1.19481 1.15332 0.91198 1.12187 0.91793 1.25686 0.99156 0.96916 1.03058 1.70229 1.40365 1.08631 1.39142 0.85348 0.77317 0.78190 0.80116 1.21575 1.22393 1.19536 0.94219 0.90283 0.93490 0.93567 0.92210 0.90738 0.92428 0.90222 0.90904 0.92099 0.93164 0.92964 0.94992 0.94143 0.98292 0.97118 0.95688 0.94655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.13 8.83 71.98 0.64 -4.49 16 2 C 0.17 6.78 2.29 44.99 0.10 6.88 16 3 H 0.05 2.04 7.87 -2.39 -0.02 2.02 16 4 C -0.09 -3.06 1.64 -10.79 -0.02 -3.08 16 5 C -0.11 -2.91 4.85 30.60 0.15 -2.77 16 6 C -0.11 -2.62 5.92 30.60 0.18 -2.44 16 7 C -0.11 -2.76 5.92 30.60 0.18 -2.58 16 8 C -0.11 -3.66 5.92 30.59 0.18 -3.48 16 9 C -0.10 -3.82 5.05 30.59 0.15 -3.67 16 10 N -0.61 -30.73 2.05 -702.75 -1.44 -32.17 16 11 C 0.18 9.46 8.00 127.77 1.02 10.48 16 12 C -0.25 -14.08 9.59 84.03 0.81 -13.27 16 13 H 0.06 3.52 7.82 -2.91 -0.02 3.50 16 14 C -0.05 -3.06 5.12 84.86 0.43 -2.63 16 15 N -0.94 -56.56 10.65 21.65 0.23 -56.33 16 16 Si 0.96 46.38 29.57 68.60 2.03 48.41 16 17 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 18 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 19 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 20 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 21 H 0.08 2.12 6.43 -2.39 -0.02 2.11 16 22 H 0.05 1.58 6.66 -2.39 -0.02 1.57 16 23 H 0.05 1.78 7.67 -2.39 -0.02 1.76 16 24 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.07 1.78 6.43 -2.39 -0.02 1.76 16 26 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 28 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.03 1.61 7.61 -2.39 -0.02 1.59 16 33 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.00 -0.07 7.41 -2.38 -0.02 -0.08 16 35 H 0.01 0.57 7.24 -2.39 -0.02 0.55 16 36 H 0.02 1.11 6.43 -2.38 -0.02 1.09 16 37 H 0.24 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -62.34 279.87 5.65 -56.69 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: 1.00 Total: 4.43 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: 3.83 Total: -21.03 kcal Atomic # 7 Polarization: -87.29 SS G_CDS: -1.21 Total: -88.49 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -62.34 5.65 -56.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307413571.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.750 kcal (2) G-P(sol) polarization free energy of solvation -62.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds