Wall clock time and date at job start Sun Mar 29 2020 21:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33639 * 118.47316 * 2 1 4 4 C 1.41518 * 118.79842 * 0.40959 * 3 2 1 5 5 O 1.21692 * 120.00102 * 104.14029 * 4 3 2 6 6 O 1.34945 * 119.99608 * 284.42268 * 4 3 2 7 7 C 1.34874 * 116.99633 * 179.72459 * 6 4 3 8 8 H 1.07997 * 120.00205 * 359.97438 * 7 6 4 9 9 C 1.38772 * 119.99228 * 179.97438 * 7 6 4 10 10 N 1.31446 * 120.00498 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99472 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46943 * 89.99767 * 11 9 7 13 13 H 1.48496 * 109.47380 * 210.00014 * 11 9 7 14 14 H 1.48499 * 109.47419 * 330.00202 * 11 9 7 15 15 C 1.50418 * 122.40572 * 180.12815 * 3 2 1 16 16 C 1.53210 * 109.56286 * 342.61240 * 15 3 2 17 17 C 1.53480 * 108.26028 * 47.37000 * 16 15 3 18 18 O 1.34324 * 118.47020 * 180.28274 * 2 1 3 19 19 H 1.09000 * 109.46614 * 84.74428 * 1 2 3 20 20 H 1.09002 * 109.46793 * 204.74094 * 1 2 3 21 21 H 1.09002 * 109.47254 * 324.73946 * 1 2 3 22 22 H 0.96998 * 119.99801 * 179.97438 * 10 9 7 23 23 H 1.09006 * 109.45337 * 102.63871 * 15 3 2 24 24 H 1.08998 * 109.46107 * 222.58420 * 15 3 2 25 25 H 1.08999 * 109.70647 * 167.06433 * 16 15 3 26 26 H 1.08999 * 109.70430 * 287.64142 * 16 15 3 27 27 H 1.08993 * 109.70981 * 56.94782 * 17 16 15 28 28 H 1.09006 * 109.69814 * 177.51293 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1441 1.1747 0.0000 4 6 1.3790 2.3652 0.0089 5 8 1.2731 3.0128 1.0337 6 8 0.7623 2.7792 -1.1178 7 6 0.0446 3.9185 -1.0396 8 1 -0.0169 4.4549 -0.1042 9 6 -0.6147 4.4014 -2.1611 10 7 -0.5394 3.7488 -3.2997 11 14 -1.6093 5.9789 -2.0527 12 1 -0.7368 7.1371 -2.3731 13 1 -2.7333 5.9230 -3.0215 14 1 -2.1483 6.1309 -0.6774 15 6 3.6448 1.2779 -0.0028 16 6 4.2519 -0.0618 0.4260 17 6 3.5563 -1.1795 -0.3630 18 8 2.1473 -1.1808 -0.0058 19 1 -0.3632 0.0941 -1.0234 20 1 -0.3633 -0.9334 0.4301 21 1 -0.3634 0.8391 0.5933 22 1 -1.0006 4.0862 -4.0834 23 1 3.9895 1.5282 -1.0062 24 1 3.9565 2.0570 0.6928 25 1 5.3199 -0.0679 0.2081 26 1 4.0938 -0.2119 1.4939 27 1 3.6642 -0.9968 -1.4321 28 1 4.0016 -2.1412 -0.1080 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307433800.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:25 Heat of formation + Delta-G solvation = -111.335658 kcal Electronic energy + Delta-G solvation = -14263.349490 eV Core-core repulsion = 11666.249747 eV Total energy + Delta-G solvation = -2597.099742 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.088 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.10671 -38.56382 -35.14023 -33.66161 -32.80065 -31.98864 -27.87655 -25.96938 -24.67481 -22.68278 -21.04511 -18.47994 -17.63448 -17.00766 -15.82327 -15.31353 -15.08915 -14.33793 -14.22707 -13.73658 -13.49690 -12.99190 -12.71362 -12.35565 -12.01731 -11.77143 -11.60508 -11.20153 -10.96867 -10.68325 -10.42199 -10.40045 -10.19134 -9.79222 -8.99606 -8.52050 -7.77107 -6.35944 -4.02332 2.27208 3.14161 3.22043 3.28474 3.45600 3.57585 4.06910 4.73904 4.87555 5.05426 5.17580 5.18772 5.36036 5.50280 5.59860 5.78385 5.84745 6.03716 6.09477 6.24225 6.33893 6.52138 6.64492 7.05913 7.44855 7.72285 8.01588 8.77911 9.13124 9.94419 10.81999 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.051712 B = 0.008403 C = 0.008129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.328292 B = 3331.162575 C = 3443.560917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.125 3.875 3 C -0.249 4.249 4 C 0.459 3.541 5 O -0.556 6.556 6 O -0.211 6.211 7 C -0.381 4.381 8 H 0.094 0.906 9 C 0.042 3.958 10 N -0.866 5.866 11 Si 0.941 3.059 12 H -0.274 1.274 13 H -0.279 1.279 14 H -0.267 1.267 15 C -0.060 4.060 16 C -0.154 4.154 17 C 0.058 3.942 18 O -0.315 6.315 19 H 0.093 0.907 20 H 0.072 0.928 21 H 0.085 0.915 22 H 0.268 0.732 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.971 -8.253 3.088 10.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.078 3.922 3 C -0.251 4.251 4 C 0.307 3.693 5 O -0.454 6.454 6 O -0.119 6.119 7 C -0.458 4.458 8 H 0.112 0.888 9 C -0.162 4.162 10 N -0.503 5.503 11 Si 0.765 3.235 12 H -0.200 1.200 13 H -0.204 1.204 14 H -0.191 1.191 15 C -0.097 4.097 16 C -0.192 4.192 17 C -0.017 4.017 18 O -0.229 6.229 19 H 0.111 0.889 20 H 0.090 0.910 21 H 0.104 0.896 22 H 0.078 0.922 23 H 0.093 0.907 24 H 0.098 0.902 25 H 0.101 0.899 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.770 -8.258 3.151 10.556 hybrid contribution -0.199 1.003 -0.087 1.027 sum 5.571 -7.255 3.064 9.647 Atomic orbital electron populations 1.20906 0.87817 1.03308 1.04694 1.20912 0.93742 0.83605 0.93935 1.19188 0.96099 0.91902 1.17941 1.19170 0.80960 0.85871 0.83294 1.90679 1.63239 1.57700 1.33765 1.84128 1.54549 1.39375 1.33816 1.21230 1.26923 0.99234 0.98381 0.88831 1.25313 0.97395 0.99252 0.94232 1.69999 1.41264 1.38612 1.00417 0.85716 0.78863 0.80321 0.78561 1.19966 1.20384 1.19110 1.20120 0.89993 0.97345 1.02238 1.22186 1.00371 0.95394 1.01205 1.23423 0.78806 0.99980 0.99450 1.86101 1.24574 1.28636 1.83540 0.88873 0.90952 0.89643 0.92185 0.90728 0.90194 0.89882 0.90549 0.91142 0.87892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.05 9.42 36.01 0.34 -1.71 15 2 C 0.12 2.40 6.70 -35.92 -0.24 2.16 15 3 C -0.25 -5.31 5.51 -105.12 -0.58 -5.89 15 4 C 0.46 12.10 5.02 31.98 0.16 12.26 15 5 O -0.56 -15.92 16.34 -19.41 -0.32 -16.24 15 6 O -0.21 -6.23 9.63 -22.28 -0.21 -6.45 15 7 C -0.38 -11.48 9.65 30.93 0.30 -11.19 15 8 H 0.09 2.85 6.86 -52.49 -0.36 2.49 15 9 C 0.04 1.19 5.50 -17.52 -0.10 1.10 15 10 N -0.87 -25.63 13.67 55.48 0.76 -24.87 15 11 Si 0.94 21.56 29.55 -169.99 -5.02 16.54 15 12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 15 13 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 14 H -0.27 -6.01 7.11 56.52 0.40 -5.61 15 15 C -0.06 -1.02 5.89 -27.91 -0.16 -1.19 15 16 C -0.15 -1.95 6.23 -26.37 -0.16 -2.12 15 17 C 0.06 0.72 7.15 37.41 0.27 0.99 15 18 O -0.32 -5.17 10.40 -14.82 -0.15 -5.33 15 19 H 0.09 1.79 8.14 -51.93 -0.42 1.36 15 20 H 0.07 1.10 8.14 -51.93 -0.42 0.67 15 21 H 0.08 1.76 6.97 -51.93 -0.36 1.40 15 22 H 0.27 7.28 8.31 -40.82 -0.34 6.94 15 23 H 0.07 1.23 8.14 -51.93 -0.42 0.81 15 24 H 0.08 1.40 8.14 -51.93 -0.42 0.97 15 25 H 0.08 0.80 8.14 -51.93 -0.42 0.38 15 26 H 0.08 0.98 8.14 -51.93 -0.42 0.56 15 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 15 28 H 0.10 0.94 8.14 -51.93 -0.42 0.51 15 LS Contribution 249.25 15.07 3.76 3.76 Total: -1.00 -34.11 249.25 -4.61 -38.72 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -3.24 Total: -0.54 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -0.18 Total: -5.59 kcal Atomic # 7 Polarization: -25.63 SS G_CDS: 0.76 Total: -24.87 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.69 Total: -28.02 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -34.11 -4.61 -38.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307433800.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.615 kcal (2) G-P(sol) polarization free energy of solvation -34.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds