Wall clock time and date at job start Sun Mar 29 2020 21:51:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 C 1.33639 * 118.47316 * 2 1
4 4 C 1.41518 * 118.79842 * 0.40959 * 3 2 1
5 5 O 1.21692 * 120.00102 * 104.14029 * 4 3 2
6 6 O 1.34945 * 119.99608 * 284.42268 * 4 3 2
7 7 C 1.34874 * 116.99633 * 179.72459 * 6 4 3
8 8 H 1.07997 * 120.00205 * 359.97438 * 7 6 4
9 9 C 1.38772 * 119.99228 * 179.97438 * 7 6 4
10 10 N 1.31446 * 120.00498 * 359.97438 * 9 7 6
11 11 Si 1.86803 * 119.99472 * 179.97438 * 9 7 6
12 12 H 1.48498 * 109.46943 * 89.99767 * 11 9 7
13 13 H 1.48496 * 109.47380 * 210.00014 * 11 9 7
14 14 H 1.48499 * 109.47419 * 330.00202 * 11 9 7
15 15 C 1.50418 * 122.40572 * 180.12815 * 3 2 1
16 16 C 1.53210 * 109.56286 * 342.61240 * 15 3 2
17 17 C 1.53480 * 108.26028 * 47.37000 * 16 15 3
18 18 O 1.34324 * 118.47020 * 180.28274 * 2 1 3
19 19 H 1.09000 * 109.46614 * 84.74428 * 1 2 3
20 20 H 1.09002 * 109.46793 * 204.74094 * 1 2 3
21 21 H 1.09002 * 109.47254 * 324.73946 * 1 2 3
22 22 H 0.96998 * 119.99801 * 179.97438 * 10 9 7
23 23 H 1.09006 * 109.45337 * 102.63871 * 15 3 2
24 24 H 1.08998 * 109.46107 * 222.58420 * 15 3 2
25 25 H 1.08999 * 109.70647 * 167.06433 * 16 15 3
26 26 H 1.08999 * 109.70430 * 287.64142 * 16 15 3
27 27 H 1.08993 * 109.70981 * 56.94782 * 17 16 15
28 28 H 1.09006 * 109.69814 * 177.51293 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1441 1.1747 0.0000
4 6 1.3790 2.3652 0.0089
5 8 1.2731 3.0128 1.0337
6 8 0.7623 2.7792 -1.1178
7 6 0.0446 3.9185 -1.0396
8 1 -0.0169 4.4549 -0.1042
9 6 -0.6147 4.4014 -2.1611
10 7 -0.5394 3.7488 -3.2997
11 14 -1.6093 5.9789 -2.0527
12 1 -0.7368 7.1371 -2.3731
13 1 -2.7333 5.9230 -3.0215
14 1 -2.1483 6.1309 -0.6774
15 6 3.6448 1.2779 -0.0028
16 6 4.2519 -0.0618 0.4260
17 6 3.5563 -1.1795 -0.3630
18 8 2.1473 -1.1808 -0.0058
19 1 -0.3632 0.0941 -1.0234
20 1 -0.3633 -0.9334 0.4301
21 1 -0.3634 0.8391 0.5933
22 1 -1.0006 4.0862 -4.0834
23 1 3.9895 1.5282 -1.0062
24 1 3.9565 2.0570 0.6928
25 1 5.3199 -0.0679 0.2081
26 1 4.0938 -0.2119 1.4939
27 1 3.6642 -0.9968 -1.4321
28 1 4.0016 -2.1412 -0.1080
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000307433800.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:51:25
Heat of formation + Delta-G solvation = -111.335658 kcal
Electronic energy + Delta-G solvation = -14263.349490 eV
Core-core repulsion = 11666.249747 eV
Total energy + Delta-G solvation = -2597.099742 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 212.088 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-40.10671 -38.56382 -35.14023 -33.66161 -32.80065 -31.98864 -27.87655 -25.96938
-24.67481 -22.68278 -21.04511 -18.47994 -17.63448 -17.00766 -15.82327 -15.31353
-15.08915 -14.33793 -14.22707 -13.73658 -13.49690 -12.99190 -12.71362 -12.35565
-12.01731 -11.77143 -11.60508 -11.20153 -10.96867 -10.68325 -10.42199 -10.40045
-10.19134 -9.79222 -8.99606 -8.52050 -7.77107 -6.35944 -4.02332 2.27208
3.14161 3.22043 3.28474 3.45600 3.57585 4.06910 4.73904 4.87555
5.05426 5.17580 5.18772 5.36036 5.50280 5.59860 5.78385 5.84745
6.03716 6.09477 6.24225 6.33893 6.52138 6.64492 7.05913 7.44855
7.72285 8.01588 8.77911 9.13124 9.94419 10.81999
Molecular weight = 212.09amu
Principal moments of inertia in cm(-1)
A = 0.051712 B = 0.008403 C = 0.008129
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 541.328292 B = 3331.162575 C = 3443.560917
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.111 4.111
2 C 0.125 3.875
3 C -0.249 4.249
4 C 0.459 3.541
5 O -0.556 6.556
6 O -0.211 6.211
7 C -0.381 4.381
8 H 0.094 0.906
9 C 0.042 3.958
10 N -0.866 5.866
11 Si 0.941 3.059
12 H -0.274 1.274
13 H -0.279 1.279
14 H -0.267 1.267
15 C -0.060 4.060
16 C -0.154 4.154
17 C 0.058 3.942
18 O -0.315 6.315
19 H 0.093 0.907
20 H 0.072 0.928
21 H 0.085 0.915
22 H 0.268 0.732
23 H 0.074 0.926
24 H 0.080 0.920
25 H 0.083 0.917
26 H 0.076 0.924
27 H 0.070 0.930
28 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.971 -8.253 3.088 10.644
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C 0.078 3.922
3 C -0.251 4.251
4 C 0.307 3.693
5 O -0.454 6.454
6 O -0.119 6.119
7 C -0.458 4.458
8 H 0.112 0.888
9 C -0.162 4.162
10 N -0.503 5.503
11 Si 0.765 3.235
12 H -0.200 1.200
13 H -0.204 1.204
14 H -0.191 1.191
15 C -0.097 4.097
16 C -0.192 4.192
17 C -0.017 4.017
18 O -0.229 6.229
19 H 0.111 0.889
20 H 0.090 0.910
21 H 0.104 0.896
22 H 0.078 0.922
23 H 0.093 0.907
24 H 0.098 0.902
25 H 0.101 0.899
26 H 0.095 0.905
27 H 0.089 0.911
28 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges 5.770 -8.258 3.151 10.556
hybrid contribution -0.199 1.003 -0.087 1.027
sum 5.571 -7.255 3.064 9.647
Atomic orbital electron populations
1.20906 0.87817 1.03308 1.04694 1.20912 0.93742 0.83605 0.93935
1.19188 0.96099 0.91902 1.17941 1.19170 0.80960 0.85871 0.83294
1.90679 1.63239 1.57700 1.33765 1.84128 1.54549 1.39375 1.33816
1.21230 1.26923 0.99234 0.98381 0.88831 1.25313 0.97395 0.99252
0.94232 1.69999 1.41264 1.38612 1.00417 0.85716 0.78863 0.80321
0.78561 1.19966 1.20384 1.19110 1.20120 0.89993 0.97345 1.02238
1.22186 1.00371 0.95394 1.01205 1.23423 0.78806 0.99980 0.99450
1.86101 1.24574 1.28636 1.83540 0.88873 0.90952 0.89643 0.92185
0.90728 0.90194 0.89882 0.90549 0.91142 0.87892
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -2.05 9.42 36.01 0.34 -1.71 15
2 C 0.12 2.40 6.70 -35.92 -0.24 2.16 15
3 C -0.25 -5.31 5.51 -105.12 -0.58 -5.89 15
4 C 0.46 12.10 5.02 31.98 0.16 12.26 15
5 O -0.56 -15.92 16.34 -19.41 -0.32 -16.24 15
6 O -0.21 -6.23 9.63 -22.28 -0.21 -6.45 15
7 C -0.38 -11.48 9.65 30.93 0.30 -11.19 15
8 H 0.09 2.85 6.86 -52.49 -0.36 2.49 15
9 C 0.04 1.19 5.50 -17.52 -0.10 1.10 15
10 N -0.87 -25.63 13.67 55.48 0.76 -24.87 15
11 Si 0.94 21.56 29.55 -169.99 -5.02 16.54 15
12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 15
13 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15
14 H -0.27 -6.01 7.11 56.52 0.40 -5.61 15
15 C -0.06 -1.02 5.89 -27.91 -0.16 -1.19 15
16 C -0.15 -1.95 6.23 -26.37 -0.16 -2.12 15
17 C 0.06 0.72 7.15 37.41 0.27 0.99 15
18 O -0.32 -5.17 10.40 -14.82 -0.15 -5.33 15
19 H 0.09 1.79 8.14 -51.93 -0.42 1.36 15
20 H 0.07 1.10 8.14 -51.93 -0.42 0.67 15
21 H 0.08 1.76 6.97 -51.93 -0.36 1.40 15
22 H 0.27 7.28 8.31 -40.82 -0.34 6.94 15
23 H 0.07 1.23 8.14 -51.93 -0.42 0.81 15
24 H 0.08 1.40 8.14 -51.93 -0.42 0.97 15
25 H 0.08 0.80 8.14 -51.93 -0.42 0.38 15
26 H 0.08 0.98 8.14 -51.93 -0.42 0.56 15
27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 15
28 H 0.10 0.94 8.14 -51.93 -0.42 0.51 15
LS Contribution 249.25 15.07 3.76 3.76
Total: -1.00 -34.11 249.25 -4.61 -38.72
By element:
Atomic # 1 Polarization: 2.70 SS G_CDS: -3.24 Total: -0.54 kcal
Atomic # 6 Polarization: -5.41 SS G_CDS: -0.18 Total: -5.59 kcal
Atomic # 7 Polarization: -25.63 SS G_CDS: 0.76 Total: -24.87 kcal
Atomic # 8 Polarization: -27.33 SS G_CDS: -0.69 Total: -28.02 kcal
Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal
Total LS contribution 3.76 Total: 3.76 kcal
Total: -34.11 -4.61 -38.72 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000307433800.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -72.615 kcal
(2) G-P(sol) polarization free energy of solvation -34.108 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.723 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.613 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.720 kcal
(6) G-S(sol) free energy of system = (1) + (5) -111.336 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds