Wall clock time and date at job start Sun Mar 29 2020 21:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33639 * 118.47316 * 2 1 4 4 C 1.41518 * 118.79842 * 0.40959 * 3 2 1 5 5 O 1.21692 * 120.00102 * 104.14029 * 4 3 2 6 6 O 1.34945 * 119.99608 * 284.42268 * 4 3 2 7 7 C 1.34874 * 116.99633 * 179.72459 * 6 4 3 8 8 H 1.07997 * 120.00205 * 359.97438 * 7 6 4 9 9 C 1.38772 * 119.99228 * 179.97438 * 7 6 4 10 10 N 1.31446 * 120.00498 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99472 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46943 * 89.99767 * 11 9 7 13 13 H 1.48496 * 109.47380 * 210.00014 * 11 9 7 14 14 H 1.48499 * 109.47419 * 330.00202 * 11 9 7 15 15 C 1.50418 * 122.40572 * 180.12815 * 3 2 1 16 16 C 1.53210 * 109.56286 * 342.61240 * 15 3 2 17 17 C 1.53480 * 108.26028 * 47.37000 * 16 15 3 18 18 O 1.34324 * 118.47020 * 180.28274 * 2 1 3 19 19 H 1.09000 * 109.46614 * 84.74428 * 1 2 3 20 20 H 1.09002 * 109.46793 * 204.74094 * 1 2 3 21 21 H 1.09002 * 109.47254 * 324.73946 * 1 2 3 22 22 H 0.96998 * 119.99801 * 179.97438 * 10 9 7 23 23 H 1.09006 * 109.45337 * 102.63871 * 15 3 2 24 24 H 1.08998 * 109.46107 * 222.58420 * 15 3 2 25 25 H 1.08999 * 109.70647 * 167.06433 * 16 15 3 26 26 H 1.08999 * 109.70430 * 287.64142 * 16 15 3 27 27 H 1.08993 * 109.70981 * 56.94782 * 17 16 15 28 28 H 1.09006 * 109.69814 * 177.51293 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1441 1.1747 0.0000 4 6 1.3790 2.3652 0.0089 5 8 1.2731 3.0128 1.0337 6 8 0.7623 2.7792 -1.1178 7 6 0.0446 3.9185 -1.0396 8 1 -0.0169 4.4549 -0.1042 9 6 -0.6147 4.4014 -2.1611 10 7 -0.5394 3.7488 -3.2997 11 14 -1.6093 5.9789 -2.0527 12 1 -0.7368 7.1371 -2.3731 13 1 -2.7333 5.9230 -3.0215 14 1 -2.1483 6.1309 -0.6774 15 6 3.6448 1.2779 -0.0028 16 6 4.2519 -0.0618 0.4260 17 6 3.5563 -1.1795 -0.3630 18 8 2.1473 -1.1808 -0.0058 19 1 -0.3632 0.0941 -1.0234 20 1 -0.3633 -0.9334 0.4301 21 1 -0.3634 0.8391 0.5933 22 1 -1.0006 4.0862 -4.0834 23 1 3.9895 1.5282 -1.0062 24 1 3.9565 2.0570 0.6928 25 1 5.3199 -0.0679 0.2081 26 1 4.0938 -0.2119 1.4939 27 1 3.6642 -0.9968 -1.4321 28 1 4.0016 -2.1412 -0.1080 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307433800.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:24 Heat of formation + Delta-G solvation = -134.329766 kcal Electronic energy + Delta-G solvation = -14264.346589 eV Core-core repulsion = 11666.249747 eV Total energy + Delta-G solvation = -2598.096842 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.088 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.72853 -40.40902 -37.27179 -35.08154 -34.41412 -34.02283 -29.31531 -27.81227 -26.36550 -24.19267 -22.66735 -20.13068 -19.79101 -18.71759 -17.31079 -17.22409 -16.49595 -16.23674 -16.01785 -15.28512 -15.08075 -14.37514 -14.29499 -13.94512 -13.63222 -13.42900 -13.22195 -13.11566 -12.43606 -12.20738 -12.20090 -12.03899 -11.75857 -11.56766 -11.09103 -10.69772 -9.33175 -8.54024 -6.33444 0.67083 1.28985 1.34468 1.51611 1.61012 2.13933 2.20767 2.95798 3.06693 3.66963 3.83202 3.95450 4.18041 4.30143 4.44553 4.52164 4.55885 4.65733 4.76350 4.88723 4.91384 5.11691 5.16194 5.21492 5.33633 5.82100 6.29158 6.63050 6.90457 7.76362 8.66213 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.051712 B = 0.008403 C = 0.008129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.328292 B = 3331.162575 C = 3443.560917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.152 3.848 3 C -0.294 4.294 4 C 0.466 3.534 5 O -0.589 6.589 6 O -0.237 6.237 7 C -0.423 4.423 8 H 0.078 0.922 9 C -0.001 4.001 10 N -0.901 5.901 11 Si 1.016 2.984 12 H -0.261 1.261 13 H -0.258 1.258 14 H -0.264 1.264 15 C -0.061 4.061 16 C -0.142 4.142 17 C 0.048 3.952 18 O -0.312 6.312 19 H 0.083 0.917 20 H 0.110 0.890 21 H 0.056 0.944 22 H 0.279 0.721 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.123 0.877 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.558 -9.336 2.878 11.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.103 3.897 3 C -0.297 4.297 4 C 0.316 3.684 5 O -0.488 6.488 6 O -0.145 6.145 7 C -0.499 4.499 8 H 0.096 0.904 9 C -0.202 4.202 10 N -0.538 5.538 11 Si 0.835 3.165 12 H -0.185 1.185 13 H -0.182 1.182 14 H -0.188 1.188 15 C -0.098 4.098 16 C -0.180 4.180 17 C -0.025 4.025 18 O -0.225 6.225 19 H 0.102 0.898 20 H 0.129 0.871 21 H 0.075 0.925 22 H 0.088 0.912 23 H 0.093 0.907 24 H 0.084 0.916 25 H 0.141 0.859 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.386 -9.376 2.936 11.718 hybrid contribution -0.330 1.208 -0.009 1.253 sum 6.056 -8.168 2.927 10.581 Atomic orbital electron populations 1.20897 0.88056 1.04111 1.03858 1.20871 0.93967 0.84000 0.90833 1.19357 0.97988 0.90440 1.21936 1.20068 0.79676 0.86634 0.82018 1.90627 1.64227 1.59332 1.34658 1.84152 1.55397 1.39585 1.35383 1.21426 1.29281 1.00376 0.98790 0.90408 1.26521 0.97615 1.02873 0.93163 1.70079 1.41920 1.40523 1.01289 0.84650 0.77535 0.75256 0.79062 1.18524 1.18171 1.18822 1.20206 0.87378 1.00065 1.02132 1.22189 1.02304 0.92333 1.01129 1.23924 0.76294 1.02244 0.99989 1.86113 1.27081 1.26589 1.82688 0.89801 0.87117 0.92509 0.91153 0.90728 0.91556 0.85892 0.90455 0.90483 0.83291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.21 9.42 71.24 0.67 -3.54 15 2 C 0.15 5.75 6.70 24.64 0.17 5.91 15 3 C -0.29 -12.77 5.51 -20.19 -0.11 -12.88 15 4 C 0.47 25.71 5.02 68.63 0.34 26.05 15 5 O -0.59 -35.49 16.34 19.21 0.31 -35.17 15 6 O -0.24 -14.66 9.63 8.94 0.09 -14.57 15 7 C -0.42 -26.56 9.65 67.95 0.66 -25.90 15 8 H 0.08 4.99 6.86 -2.91 -0.02 4.97 15 9 C 0.00 -0.08 5.50 84.88 0.47 0.39 15 10 N -0.90 -54.02 13.67 21.63 0.30 -53.73 15 11 Si 1.02 44.23 29.55 68.60 2.03 46.26 15 12 H -0.26 -10.75 7.11 99.48 0.71 -10.04 15 13 H -0.26 -10.29 7.11 99.48 0.71 -9.59 15 14 H -0.26 -11.28 7.11 99.48 0.71 -10.57 15 15 C -0.06 -2.05 5.89 29.83 0.18 -1.87 15 16 C -0.14 -3.16 6.23 30.83 0.19 -2.96 15 17 C 0.05 1.02 7.15 72.14 0.52 1.53 15 18 O -0.31 -9.37 10.40 -75.94 -0.79 -10.16 15 19 H 0.08 3.29 8.14 -2.39 -0.02 3.27 15 20 H 0.11 3.19 8.14 -2.39 -0.02 3.17 15 21 H 0.06 2.44 6.97 -2.39 -0.02 2.42 15 22 H 0.28 15.11 8.31 -92.71 -0.77 14.34 15 23 H 0.07 2.45 8.14 -2.38 -0.02 2.43 15 24 H 0.07 2.36 8.14 -2.39 -0.02 2.34 15 25 H 0.12 1.80 8.14 -2.39 -0.02 1.78 15 26 H 0.08 1.74 8.14 -2.39 -0.02 1.72 15 27 H 0.08 1.58 8.14 -2.39 -0.02 1.56 15 28 H 0.15 1.85 8.14 -2.38 -0.02 1.83 15 Total: -1.00 -77.18 249.25 6.17 -71.01 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 1.16 Total: 9.62 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: 3.08 Total: -13.27 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: 0.30 Total: -53.73 kcal Atomic # 8 Polarization: -59.52 SS G_CDS: -0.39 Total: -59.91 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -77.18 6.17 -71.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307433800.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.317 kcal (2) G-P(sol) polarization free energy of solvation -77.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds