Wall clock time and date at job start Sun Mar 29 2020 21:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86795 * 119.99942 * 2 1 4 4 H 1.48501 * 109.47088 * 269.99890 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.00092 * 3 2 1 6 6 H 1.48502 * 109.47297 * 149.99876 * 3 2 1 7 7 C 1.38955 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99776 * 179.97438 * 7 2 1 9 9 N 1.37090 * 119.99996 * 0.02562 * 7 2 1 10 10 C 1.34784 * 119.99722 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00107 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99961 * 179.97438 * 10 9 7 13 13 C 1.50697 * 109.47266 * 180.02562 * 12 10 9 14 14 C 1.33630 * 126.03963 * 89.99962 * 13 12 10 15 15 N 1.31783 * 114.50354 * 180.02562 * 14 13 12 16 16 C 1.29025 * 117.12171 * 359.97438 * 15 14 13 17 17 S 1.70976 * 110.16656 * 359.72929 * 16 15 14 18 18 H 0.97000 * 120.00310 * 0.02562 * 1 2 3 19 19 H 0.96995 * 120.00208 * 0.26881 * 9 7 2 20 20 H 1.09004 * 109.46932 * 300.00223 * 12 10 9 21 21 H 1.08997 * 109.47392 * 59.99562 * 12 10 9 22 22 H 1.08005 * 122.74961 * 359.97438 * 14 13 12 23 23 H 1.08003 * 124.92050 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2102 -3.5579 0.0001 12 6 1.2438 -4.8630 0.0011 13 6 2.2231 -6.0084 0.0016 14 6 2.7340 -6.6055 1.0824 15 7 3.5735 -7.5867 0.8193 16 6 3.7987 -7.8508 -0.4234 17 16 2.8907 -6.8021 -1.4228 18 1 -0.4850 0.8400 -0.0004 19 1 0.3534 -2.3906 -0.0038 20 1 0.6175 -4.9205 0.8914 21 1 0.6168 -4.9209 -0.8885 22 1 2.4804 -6.3078 2.0892 23 1 4.4609 -8.6256 -0.7806 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307474089.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:00 Heat of formation + Delta-G solvation = 2.662690 kcal Electronic energy + Delta-G solvation = -11369.260681 eV Core-core repulsion = 9116.316805 eV Total energy + Delta-G solvation = -2252.943875 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.036 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.39185 -38.07358 -34.07284 -32.21490 -31.20164 -27.57048 -25.12584 -23.77957 -20.08878 -19.28555 -18.09096 -17.50690 -16.01162 -15.34431 -14.60474 -14.11823 -13.88272 -13.83671 -13.57605 -12.62121 -12.35955 -11.89669 -11.56238 -11.12829 -10.84779 -10.42640 -10.26975 -9.57181 -9.41858 -9.01563 -8.73037 -8.35990 -8.03419 -6.47067 -3.88244 1.01732 1.66090 2.04384 3.14041 3.14878 3.24192 3.30378 3.82095 4.14343 4.58319 4.96045 5.17791 5.20264 5.46803 5.55935 5.85932 6.12892 6.24724 6.46818 7.50478 7.95573 7.99062 8.53467 9.11480 9.46416 9.97169 10.70278 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.072941 B = 0.006776 C = 0.006660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.780392 B = 4131.302539 C = 4203.101522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.558 5.558 10 C 0.440 3.560 11 O -0.586 6.586 12 C -0.062 4.062 13 C -0.163 4.163 14 C 0.026 3.974 15 N -0.469 5.469 16 C -0.002 4.002 17 S 0.123 5.877 18 H 0.272 0.728 19 H 0.394 0.606 20 H 0.101 0.899 21 H 0.092 0.908 22 H 0.172 0.828 23 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.054 -10.650 -2.066 10.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.431 4.431 8 H 0.121 0.879 9 N -0.194 5.194 10 C 0.225 3.775 11 O -0.471 6.471 12 C -0.105 4.105 13 C -0.284 4.284 14 C -0.124 4.124 15 N -0.183 5.183 16 C -0.299 4.299 17 S 0.374 5.626 18 H 0.082 0.918 19 H 0.227 0.773 20 H 0.120 0.880 21 H 0.110 0.890 22 H 0.189 0.811 23 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 0.930 -10.725 -2.716 11.103 hybrid contribution -0.342 1.143 0.836 1.457 sum 0.589 -9.582 -1.880 9.783 Atomic orbital electron populations 1.69607 1.05947 1.28308 1.50191 1.25283 0.95660 0.99796 0.97120 0.85841 0.79254 0.80669 0.78446 1.20337 1.20840 1.19387 1.19719 0.93410 0.82151 1.47804 0.87875 1.41850 1.09252 1.04489 1.63841 1.19659 0.88293 0.84463 0.85124 1.90553 1.13710 1.87077 1.55762 1.20035 0.95761 0.90321 1.04413 1.25415 1.05432 1.02800 0.94769 1.21602 0.96511 0.94200 1.00116 1.66252 1.15747 1.16976 1.19301 1.28161 1.05418 1.04770 0.91575 1.83846 1.39065 1.27512 1.12157 0.91762 0.77294 0.88038 0.88976 0.81086 0.78972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.11 13.05 55.50 0.72 -23.39 14 2 C 0.02 0.62 5.50 -17.47 -0.10 0.52 14 3 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 14 4 H -0.28 -6.15 7.11 56.52 0.40 -5.74 14 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 14 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 14 7 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 14 8 H 0.10 3.00 7.16 -52.49 -0.38 2.63 14 9 N -0.56 -13.91 5.29 -10.96 -0.06 -13.97 14 10 C 0.44 10.22 7.78 -10.98 -0.09 10.14 14 11 O -0.59 -15.91 15.61 5.55 0.09 -15.83 14 12 C -0.06 -1.07 6.24 -29.04 -0.18 -1.25 14 13 C -0.16 -2.77 5.09 -35.92 -0.18 -2.95 14 14 C 0.03 0.44 11.25 -19.19 -0.22 0.22 14 15 N -0.47 -7.81 10.54 -15.75 -0.17 -7.98 14 16 C 0.00 -0.03 12.23 51.58 0.63 0.60 14 17 S 0.12 1.79 23.22 -107.50 -2.50 -0.70 14 18 H 0.27 6.91 8.31 -40.82 -0.34 6.57 14 19 H 0.39 9.26 7.90 -40.82 -0.32 8.94 14 20 H 0.10 1.48 8.14 -51.93 -0.42 1.06 14 21 H 0.09 1.38 8.14 -51.93 -0.42 0.95 14 22 H 0.17 2.63 8.06 -52.48 -0.42 2.21 14 23 H 0.19 1.90 8.06 -52.48 -0.42 1.48 14 LS Contribution 232.11 15.07 3.50 3.50 Total: -1.00 -31.83 232.11 -5.23 -37.07 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -1.52 Total: 6.64 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -0.27 Total: -1.19 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: 0.50 Total: -45.33 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: 0.09 Total: -15.83 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.50 Total: -0.70 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -31.83 -5.23 -37.07 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307474089.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.728 kcal (2) G-P(sol) polarization free energy of solvation -31.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds