Wall clock time and date at job start Sun Mar 29 2020 21:47:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31411 * 1
3 3 Si 1.86795 * 119.99942 * 2 1
4 4 H 1.48501 * 109.47088 * 269.99890 * 3 2 1
5 5 H 1.48495 * 109.47293 * 30.00092 * 3 2 1
6 6 H 1.48502 * 109.47297 * 149.99876 * 3 2 1
7 7 C 1.38955 * 119.99860 * 179.97438 * 2 1 3
8 8 H 1.07999 * 119.99776 * 179.97438 * 7 2 1
9 9 N 1.37090 * 119.99996 * 0.02562 * 7 2 1
10 10 C 1.34784 * 119.99722 * 179.97438 * 9 7 2
11 11 O 1.21292 * 120.00107 * 359.97438 * 10 9 7
12 12 C 1.50700 * 119.99961 * 179.97438 * 10 9 7
13 13 C 1.50697 * 109.47266 * 180.02562 * 12 10 9
14 14 C 1.33630 * 126.03963 * 89.99962 * 13 12 10
15 15 N 1.31783 * 114.50354 * 180.02562 * 14 13 12
16 16 C 1.29025 * 117.12171 * 359.97438 * 15 14 13
17 17 S 1.70976 * 110.16656 * 359.72929 * 16 15 14
18 18 H 0.97000 * 120.00310 * 0.02562 * 1 2 3
19 19 H 0.96995 * 120.00208 * 0.26881 * 9 7 2
20 20 H 1.09004 * 109.46932 * 300.00223 * 12 10 9
21 21 H 1.08997 * 109.47392 * 59.99562 * 12 10 9
22 22 H 1.08005 * 122.74961 * 359.97438 * 14 13 12
23 23 H 1.08003 * 124.92050 * 180.02562 * 16 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2481 1.6177 0.0000
4 1 2.4956 2.0464 -1.4001
5 1 1.4456 2.6526 0.7000
6 1 3.5456 1.4402 0.7001
7 6 2.0089 -1.2034 0.0005
8 1 3.0888 -1.2034 0.0001
9 7 1.3234 -2.3906 0.0005
10 6 1.9973 -3.5579 0.0005
11 8 3.2102 -3.5579 0.0001
12 6 1.2438 -4.8630 0.0011
13 6 2.2231 -6.0084 0.0016
14 6 2.7340 -6.6055 1.0824
15 7 3.5735 -7.5867 0.8193
16 6 3.7987 -7.8508 -0.4234
17 16 2.8907 -6.8021 -1.4228
18 1 -0.4850 0.8400 -0.0004
19 1 0.3534 -2.3906 -0.0038
20 1 0.6175 -4.9205 0.8914
21 1 0.6168 -4.9209 -0.8885
22 1 2.4804 -6.3078 2.0892
23 1 4.4609 -8.6256 -0.7806
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000307474089.mol2 23
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:47:59
Heat of formation + Delta-G solvation = -20.398461 kcal
Electronic energy + Delta-G solvation = -11370.260687 eV
Core-core repulsion = 9116.316805 eV
Total energy + Delta-G solvation = -2253.943882 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 212.036 amu
Computer time = 0.14 seconds
Orbital eigenvalues (eV)
-40.72240 -39.83704 -36.04787 -33.71866 -33.10727 -28.96891 -26.86828 -25.21681
-21.60625 -20.78964 -19.98374 -18.84696 -17.80739 -16.72393 -16.45219 -15.84160
-15.50807 -15.22682 -14.78347 -14.31102 -13.85134 -13.48326 -13.30561 -12.89804
-12.43763 -12.13153 -12.11137 -11.53402 -10.61636 -10.56317 -10.10012 -10.04031
-9.79006 -8.48606 -5.97604 -0.18101 0.50252 0.86550 1.36948 1.41729
1.54070 1.90744 2.00911 2.29914 3.18485 3.26405 3.50097 3.85876
4.22373 4.41539 4.46283 4.64660 4.86387 5.22903 5.39864 5.96842
6.55967 6.76910 7.09616 7.52069 8.07198 8.68338
Molecular weight = 212.04amu
Principal moments of inertia in cm(-1)
A = 0.072941 B = 0.006776 C = 0.006660
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 383.780392 B = 4131.302539 C = 4203.101522
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.917 5.917
2 C -0.011 4.011
3 Si 0.992 3.008
4 H -0.270 1.270
5 H -0.270 1.270
6 H -0.275 1.275
7 C -0.335 4.335
8 H 0.078 0.922
9 N -0.568 5.568
10 C 0.440 3.560
11 O -0.629 6.629
12 C -0.049 4.049
13 C -0.198 4.198
14 C 0.019 3.981
15 N -0.499 5.499
16 C 0.013 3.987
17 S 0.143 5.857
18 H 0.279 0.721
19 H 0.399 0.601
20 H 0.128 0.872
21 H 0.117 0.883
22 H 0.177 0.823
23 H 0.234 0.766
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.087 -11.164 -2.503 11.442
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.558 5.558
2 C -0.211 4.211
3 Si 0.816 3.184
4 H -0.196 1.196
5 H -0.194 1.194
6 H -0.200 1.200
7 C -0.465 4.465
8 H 0.096 0.904
9 N -0.205 5.205
10 C 0.227 3.773
11 O -0.516 6.516
12 C -0.091 4.091
13 C -0.319 4.319
14 C -0.131 4.131
15 N -0.213 5.213
16 C -0.284 4.284
17 S 0.396 5.604
18 H 0.088 0.912
19 H 0.233 0.767
20 H 0.146 0.854
21 H 0.135 0.865
22 H 0.194 0.806
23 H 0.250 0.750
Dipole moment (debyes) X Y Z Total
from point charges 0.755 -11.250 -3.163 11.711
hybrid contribution -0.248 1.198 0.942 1.544
sum 0.507 -10.052 -2.221 10.307
Atomic orbital electron populations
1.69660 1.06749 1.29406 1.49941 1.26031 0.96562 1.02374 0.96156
0.84940 0.77855 0.76941 0.78686 1.19569 1.19428 1.19962 1.19650
0.92673 0.84006 1.50144 0.90431 1.41908 1.09448 1.04540 1.64561
1.20696 0.88114 0.85899 0.82625 1.90518 1.15955 1.88047 1.57072
1.19935 0.95562 0.86654 1.06941 1.25493 1.06704 1.03651 0.96079
1.21831 0.96345 0.94274 1.00626 1.66310 1.16694 1.17679 1.20581
1.28911 1.04295 1.04431 0.90740 1.83742 1.38639 1.26950 1.11091
0.91189 0.76664 0.85376 0.86483 0.80596 0.74985
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -48.65 13.05 21.66 0.28 -48.36 14
2 C -0.01 -0.58 5.50 84.93 0.47 -0.12 14
3 Si 0.99 42.53 29.55 68.60 2.03 44.56 14
4 H -0.27 -11.23 7.11 99.48 0.71 -10.52 14
5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 14
6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 14
7 C -0.34 -18.84 9.68 84.04 0.81 -18.02 14
8 H 0.08 4.68 7.16 -2.91 -0.02 4.66 14
9 N -0.57 -28.53 5.29 -306.98 -1.62 -30.15 14
10 C 0.44 20.45 7.78 87.66 0.68 21.13 14
11 O -0.63 -34.63 15.61 -3.07 -0.05 -34.68 14
12 C -0.05 -1.60 6.24 29.10 0.18 -1.42 14
13 C -0.20 -6.48 5.09 24.64 0.13 -6.35 14
14 C 0.02 0.64 11.25 83.65 0.94 1.58 14
15 N -0.50 -15.78 10.54 -203.75 -2.15 -17.93 14
16 C 0.01 0.33 12.23 130.65 1.60 1.93 14
17 S 0.14 3.91 23.22 -56.49 -1.31 2.60 14
18 H 0.28 13.83 8.31 -92.71 -0.77 13.06 14
19 H 0.40 18.78 7.90 -92.71 -0.73 18.05 14
20 H 0.13 3.50 8.14 -2.38 -0.02 3.48 14
21 H 0.12 3.25 8.14 -2.39 -0.02 3.23 14
22 H 0.18 5.33 8.06 -2.91 -0.02 5.30 14
23 H 0.23 3.70 8.06 -2.91 -0.02 3.68 14
Total: -1.00 -68.22 232.11 2.50 -65.72
By element:
Atomic # 1 Polarization: 19.00 SS G_CDS: 0.51 Total: 19.51 kcal
Atomic # 6 Polarization: -6.07 SS G_CDS: 4.81 Total: -1.26 kcal
Atomic # 7 Polarization: -92.96 SS G_CDS: -3.49 Total: -96.45 kcal
Atomic # 8 Polarization: -34.63 SS G_CDS: -0.05 Total: -34.68 kcal
Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal
Atomic # 16 Polarization: 3.91 SS G_CDS: -1.31 Total: 2.60 kcal
Total: -68.22 2.50 -65.72 kcal
The number of atoms in the molecule is 23
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000307474089.mol2 23
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.326 kcal
(2) G-P(sol) polarization free energy of solvation -68.223 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.897 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.724 kcal
(6) G-S(sol) free energy of system = (1) + (5) -20.398 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.14 seconds