Wall clock time and date at job start Sun Mar 29 2020 21:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86795 * 119.99942 * 2 1 4 4 H 1.48501 * 109.47088 * 269.99890 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.00092 * 3 2 1 6 6 H 1.48502 * 109.47297 * 149.99876 * 3 2 1 7 7 C 1.38955 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99776 * 179.97438 * 7 2 1 9 9 N 1.37090 * 119.99996 * 0.02562 * 7 2 1 10 10 C 1.34784 * 119.99722 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00107 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99961 * 179.97438 * 10 9 7 13 13 C 1.50697 * 109.47266 * 180.02562 * 12 10 9 14 14 C 1.33630 * 126.03963 * 89.99962 * 13 12 10 15 15 N 1.31783 * 114.50354 * 180.02562 * 14 13 12 16 16 C 1.29025 * 117.12171 * 359.97438 * 15 14 13 17 17 S 1.70976 * 110.16656 * 359.72929 * 16 15 14 18 18 H 0.97000 * 120.00310 * 0.02562 * 1 2 3 19 19 H 0.96995 * 120.00208 * 0.26881 * 9 7 2 20 20 H 1.09004 * 109.46932 * 300.00223 * 12 10 9 21 21 H 1.08997 * 109.47392 * 59.99562 * 12 10 9 22 22 H 1.08005 * 122.74961 * 359.97438 * 14 13 12 23 23 H 1.08003 * 124.92050 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2102 -3.5579 0.0001 12 6 1.2438 -4.8630 0.0011 13 6 2.2231 -6.0084 0.0016 14 6 2.7340 -6.6055 1.0824 15 7 3.5735 -7.5867 0.8193 16 6 3.7987 -7.8508 -0.4234 17 16 2.8907 -6.8021 -1.4228 18 1 -0.4850 0.8400 -0.0004 19 1 0.3534 -2.3906 -0.0038 20 1 0.6175 -4.9205 0.8914 21 1 0.6168 -4.9209 -0.8885 22 1 2.4804 -6.3078 2.0892 23 1 4.4609 -8.6256 -0.7806 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307474089.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:59 Heat of formation + Delta-G solvation = -20.398461 kcal Electronic energy + Delta-G solvation = -11370.260687 eV Core-core repulsion = 9116.316805 eV Total energy + Delta-G solvation = -2253.943882 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.036 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.72240 -39.83704 -36.04787 -33.71866 -33.10727 -28.96891 -26.86828 -25.21681 -21.60625 -20.78964 -19.98374 -18.84696 -17.80739 -16.72393 -16.45219 -15.84160 -15.50807 -15.22682 -14.78347 -14.31102 -13.85134 -13.48326 -13.30561 -12.89804 -12.43763 -12.13153 -12.11137 -11.53402 -10.61636 -10.56317 -10.10012 -10.04031 -9.79006 -8.48606 -5.97604 -0.18101 0.50252 0.86550 1.36948 1.41729 1.54070 1.90744 2.00911 2.29914 3.18485 3.26405 3.50097 3.85876 4.22373 4.41539 4.46283 4.64660 4.86387 5.22903 5.39864 5.96842 6.55967 6.76910 7.09616 7.52069 8.07198 8.68338 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.072941 B = 0.006776 C = 0.006660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.780392 B = 4131.302539 C = 4203.101522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 0.992 3.008 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.275 1.275 7 C -0.335 4.335 8 H 0.078 0.922 9 N -0.568 5.568 10 C 0.440 3.560 11 O -0.629 6.629 12 C -0.049 4.049 13 C -0.198 4.198 14 C 0.019 3.981 15 N -0.499 5.499 16 C 0.013 3.987 17 S 0.143 5.857 18 H 0.279 0.721 19 H 0.399 0.601 20 H 0.128 0.872 21 H 0.117 0.883 22 H 0.177 0.823 23 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.087 -11.164 -2.503 11.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.211 4.211 3 Si 0.816 3.184 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.200 1.200 7 C -0.465 4.465 8 H 0.096 0.904 9 N -0.205 5.205 10 C 0.227 3.773 11 O -0.516 6.516 12 C -0.091 4.091 13 C -0.319 4.319 14 C -0.131 4.131 15 N -0.213 5.213 16 C -0.284 4.284 17 S 0.396 5.604 18 H 0.088 0.912 19 H 0.233 0.767 20 H 0.146 0.854 21 H 0.135 0.865 22 H 0.194 0.806 23 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 0.755 -11.250 -3.163 11.711 hybrid contribution -0.248 1.198 0.942 1.544 sum 0.507 -10.052 -2.221 10.307 Atomic orbital electron populations 1.69660 1.06749 1.29406 1.49941 1.26031 0.96562 1.02374 0.96156 0.84940 0.77855 0.76941 0.78686 1.19569 1.19428 1.19962 1.19650 0.92673 0.84006 1.50144 0.90431 1.41908 1.09448 1.04540 1.64561 1.20696 0.88114 0.85899 0.82625 1.90518 1.15955 1.88047 1.57072 1.19935 0.95562 0.86654 1.06941 1.25493 1.06704 1.03651 0.96079 1.21831 0.96345 0.94274 1.00626 1.66310 1.16694 1.17679 1.20581 1.28911 1.04295 1.04431 0.90740 1.83742 1.38639 1.26950 1.11091 0.91189 0.76664 0.85376 0.86483 0.80596 0.74985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.65 13.05 21.66 0.28 -48.36 14 2 C -0.01 -0.58 5.50 84.93 0.47 -0.12 14 3 Si 0.99 42.53 29.55 68.60 2.03 44.56 14 4 H -0.27 -11.23 7.11 99.48 0.71 -10.52 14 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 14 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 14 7 C -0.34 -18.84 9.68 84.04 0.81 -18.02 14 8 H 0.08 4.68 7.16 -2.91 -0.02 4.66 14 9 N -0.57 -28.53 5.29 -306.98 -1.62 -30.15 14 10 C 0.44 20.45 7.78 87.66 0.68 21.13 14 11 O -0.63 -34.63 15.61 -3.07 -0.05 -34.68 14 12 C -0.05 -1.60 6.24 29.10 0.18 -1.42 14 13 C -0.20 -6.48 5.09 24.64 0.13 -6.35 14 14 C 0.02 0.64 11.25 83.65 0.94 1.58 14 15 N -0.50 -15.78 10.54 -203.75 -2.15 -17.93 14 16 C 0.01 0.33 12.23 130.65 1.60 1.93 14 17 S 0.14 3.91 23.22 -56.49 -1.31 2.60 14 18 H 0.28 13.83 8.31 -92.71 -0.77 13.06 14 19 H 0.40 18.78 7.90 -92.71 -0.73 18.05 14 20 H 0.13 3.50 8.14 -2.38 -0.02 3.48 14 21 H 0.12 3.25 8.14 -2.39 -0.02 3.23 14 22 H 0.18 5.33 8.06 -2.91 -0.02 5.30 14 23 H 0.23 3.70 8.06 -2.91 -0.02 3.68 14 Total: -1.00 -68.22 232.11 2.50 -65.72 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.51 Total: 19.51 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: 4.81 Total: -1.26 kcal Atomic # 7 Polarization: -92.96 SS G_CDS: -3.49 Total: -96.45 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -0.05 Total: -34.68 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Atomic # 16 Polarization: 3.91 SS G_CDS: -1.31 Total: 2.60 kcal Total: -68.22 2.50 -65.72 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307474089.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.326 kcal (2) G-P(sol) polarization free energy of solvation -68.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds