Wall clock time and date at job start Sun Mar 29 2020 21:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47514 * 2 1 4 4 N 1.46500 * 109.46826 * 239.99987 * 2 1 3 5 5 C 1.36940 * 120.00263 * 85.00248 * 4 2 1 6 6 H 1.08004 * 119.99402 * 359.97438 * 5 4 2 7 7 C 1.38806 * 120.00264 * 180.02562 * 5 4 2 8 8 N 1.31616 * 120.00160 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 120.00054 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46493 * 90.00787 * 9 7 5 11 11 H 1.48499 * 109.47196 * 210.00302 * 9 7 5 12 12 H 1.48495 * 109.47087 * 330.00649 * 9 7 5 13 13 C 1.53000 * 109.46886 * 120.00434 * 2 1 3 14 14 H 1.09000 * 109.46968 * 179.97438 * 13 2 1 15 15 C 1.52996 * 109.47328 * 59.99799 * 13 2 1 16 16 C 1.53000 * 109.47328 * 179.97438 * 15 13 2 17 17 C 1.53002 * 109.47233 * 59.99531 * 16 15 13 18 18 C 1.53006 * 109.46977 * 300.00464 * 17 16 15 19 19 H 1.08998 * 109.46505 * 179.97438 * 18 17 16 20 20 C 1.52997 * 109.47127 * 299.99541 * 18 17 16 21 21 C 1.52992 * 109.47223 * 60.00047 * 18 17 16 22 22 H 1.08992 * 109.47514 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46652 * 299.99911 * 1 2 3 24 24 H 1.09004 * 109.47086 * 59.99712 * 1 2 3 25 25 H 0.97006 * 120.00223 * 265.00413 * 4 2 1 26 26 H 0.96997 * 120.00695 * 179.97438 * 8 7 5 27 27 H 1.09000 * 109.46870 * 299.99783 * 15 13 2 28 28 H 1.09001 * 109.47372 * 59.99633 * 15 13 2 29 29 H 1.08992 * 109.47399 * 179.97438 * 16 15 13 30 30 H 1.09004 * 109.46724 * 300.00183 * 16 15 13 31 31 H 1.08993 * 109.47662 * 180.02562 * 17 16 15 32 32 H 1.09000 * 109.46986 * 60.00203 * 17 16 15 33 33 H 1.09002 * 109.47153 * 180.02562 * 20 18 17 34 34 H 1.09001 * 109.46832 * 60.00321 * 20 18 17 35 35 H 1.09004 * 109.47261 * 300.00303 * 20 18 17 36 36 H 1.08996 * 109.47747 * 59.99547 * 21 18 17 37 37 H 1.09002 * 109.47103 * 179.97438 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3758 6 1 1.8919 1.0403 -2.4243 7 6 2.6112 -0.6620 -3.5093 8 7 2.7374 -0.0053 -4.6429 9 14 3.0554 -2.4745 -3.4255 10 1 1.8579 -3.2927 -3.7445 11 1 4.1304 -2.7667 -4.4074 12 1 3.5308 -2.8049 -2.0580 13 6 2.0399 -0.7214 1.2492 14 1 3.1300 -0.7218 1.2490 15 6 1.5299 -2.1638 1.2492 16 6 2.0404 -2.8853 2.4980 17 6 1.5310 -2.1643 3.7477 18 6 2.0411 -0.7218 3.7476 19 1 1.6779 -0.2080 4.6377 20 6 3.5711 -0.7218 3.7470 21 6 1.5306 -0.0003 2.4988 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 2.2489 -1.6319 -1.1527 26 1 3.0607 -0.4625 -5.4350 27 1 0.4399 -2.1637 1.2492 28 1 1.8932 -2.6776 0.3591 29 1 1.6767 -3.9128 2.4982 30 1 3.1304 -2.8853 2.4975 31 1 1.8950 -2.6780 4.6374 32 1 0.4410 -2.1642 3.7482 33 1 3.9345 0.3058 3.7474 34 1 3.9340 -1.2356 2.8567 35 1 3.9348 -1.2359 4.6368 36 1 0.4406 -0.0002 2.4992 37 1 1.8936 1.0275 2.4991 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307583388.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:18 Heat of formation + Delta-G solvation = -18.662542 kcal Electronic energy + Delta-G solvation = -14945.384888 eV Core-core repulsion = 12721.688605 eV Total energy + Delta-G solvation = -2223.696283 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.37403 -35.54465 -32.41068 -31.40677 -30.12651 -27.85162 -26.64470 -24.18377 -22.41960 -21.99237 -19.51680 -18.12578 -17.61189 -15.36952 -14.75062 -14.58972 -14.32147 -13.73634 -13.67857 -13.10959 -12.72754 -12.48115 -12.29050 -12.05643 -11.67014 -11.36992 -11.29216 -10.98381 -10.92047 -10.66524 -10.62180 -10.43870 -10.09051 -9.90240 -9.71328 -9.50075 -9.37591 -8.85609 -7.19016 -5.71634 -3.05506 3.40180 3.43172 3.47841 4.63678 4.82832 4.85504 4.92172 5.28119 5.35790 5.48009 5.51186 5.58213 5.62929 5.69622 5.81402 5.82821 5.88289 5.97813 6.00557 6.13392 6.15696 6.20568 6.28413 6.37547 6.43913 6.46996 6.52672 6.56722 6.72372 6.79680 6.94429 7.18737 8.07084 8.48384 9.28242 10.01149 10.22072 11.47237 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.040516 B = 0.008811 C = 0.008170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.922208 B = 3176.974026 C = 3426.455607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.181 3.819 3 H 0.052 0.948 4 N -0.749 5.749 5 C -0.237 4.237 6 H 0.089 0.911 7 C 0.002 3.998 8 N -0.937 5.937 9 Si 0.881 3.119 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.277 1.277 13 C -0.094 4.094 14 H 0.071 0.929 15 C -0.115 4.115 16 C -0.122 4.122 17 C -0.111 4.111 18 C -0.091 4.091 19 H 0.063 0.937 20 C -0.151 4.151 21 C -0.108 4.108 22 H 0.047 0.953 23 H 0.040 0.960 24 H 0.053 0.947 25 H 0.360 0.640 26 H 0.258 0.742 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.064 0.936 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.997 -3.726 17.416 17.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.072 3.928 3 H 0.070 0.930 4 N -0.393 5.393 5 C -0.368 4.368 6 H 0.107 0.893 7 C -0.194 4.194 8 N -0.585 5.585 9 Si 0.712 3.288 10 H -0.212 1.212 11 H -0.218 1.218 12 H -0.203 1.203 13 C -0.113 4.113 14 H 0.089 0.911 15 C -0.152 4.152 16 C -0.159 4.159 17 C -0.149 4.149 18 C -0.109 4.109 19 H 0.081 0.919 20 C -0.208 4.208 21 C -0.146 4.146 22 H 0.066 0.934 23 H 0.059 0.941 24 H 0.072 0.928 25 H 0.194 0.806 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.979 -3.545 17.224 17.696 hybrid contribution 0.318 -1.319 -0.174 1.368 sum -1.661 -4.864 17.050 17.808 Atomic orbital electron populations 1.22497 0.99227 1.00809 1.00140 1.20190 0.91869 0.95396 0.85365 0.93027 1.42873 1.79700 1.09537 1.07192 1.19115 1.36344 0.95595 0.85697 0.89297 1.24651 1.01747 0.97367 0.95604 1.69696 1.53140 1.35469 1.00243 0.86587 0.78120 0.87118 0.76980 1.21168 1.21816 1.20338 1.21456 1.00480 0.94733 0.94595 0.91063 1.21602 1.00857 0.95748 0.97014 1.21594 1.00891 0.98424 0.95007 1.21539 1.00307 0.95470 0.97566 1.21088 0.95828 0.95927 0.98072 0.91892 1.21946 0.95582 1.01581 1.01716 1.21636 1.00664 0.98663 0.93595 0.93430 0.94063 0.92831 0.80601 0.93184 0.91738 0.92139 0.92681 0.91952 0.92720 0.92264 0.92929 0.91736 0.93425 0.91697 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.99 8.79 37.16 0.33 -2.66 16 2 C 0.18 3.53 2.72 -67.93 -0.18 3.34 16 3 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 4 N -0.75 -18.00 4.85 -53.43 -0.26 -18.26 16 5 C -0.24 -6.81 10.41 -15.06 -0.16 -6.96 16 6 H 0.09 2.73 8.06 -52.48 -0.42 2.30 16 7 C 0.00 0.05 5.50 -17.43 -0.10 -0.05 16 8 N -0.94 -29.92 13.97 55.49 0.78 -29.14 16 9 Si 0.88 22.56 27.74 -169.99 -4.71 17.84 16 10 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 11 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 12 H -0.28 -6.68 6.52 56.52 0.37 -6.31 16 13 C -0.09 -1.48 1.90 -90.62 -0.17 -1.65 16 14 H 0.07 1.20 6.43 -51.93 -0.33 0.87 16 15 C -0.11 -1.73 4.68 -26.73 -0.13 -1.86 16 16 C -0.12 -1.53 5.65 -26.73 -0.15 -1.68 16 17 C -0.11 -1.23 5.45 -26.73 -0.15 -1.38 16 18 C -0.09 -1.03 3.19 -90.62 -0.29 -1.32 16 19 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 20 C -0.15 -1.70 8.50 37.16 0.32 -1.39 16 21 C -0.11 -1.41 4.38 -26.73 -0.12 -1.52 16 22 H 0.05 0.83 6.43 -51.93 -0.33 0.50 16 23 H 0.04 0.62 6.43 -51.93 -0.33 0.28 16 24 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.36 8.52 3.92 -40.82 -0.16 8.36 16 26 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 27 H 0.06 0.95 6.43 -51.93 -0.33 0.62 16 28 H 0.06 1.03 6.51 -51.93 -0.34 0.70 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.79 6.43 -51.93 -0.33 0.46 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.80 4.81 -51.93 -0.25 0.55 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.83 6.43 -51.93 -0.33 0.49 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 271.85 15.07 4.10 4.10 Total: -1.00 -30.57 271.85 -7.04 -37.61 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -6.14 Total: 4.97 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -0.80 Total: -17.12 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: 0.52 Total: -47.40 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.71 Total: 17.84 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.57 -7.04 -37.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307583388.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.950 kcal (2) G-P(sol) polarization free energy of solvation -30.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds