Wall clock time and date at job start Sun Mar 29 2020 21:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47514 * 2 1 4 4 N 1.46500 * 109.46826 * 239.99987 * 2 1 3 5 5 C 1.36940 * 120.00263 * 85.00248 * 4 2 1 6 6 H 1.08004 * 119.99402 * 359.97438 * 5 4 2 7 7 C 1.38806 * 120.00264 * 180.02562 * 5 4 2 8 8 N 1.31616 * 120.00160 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 120.00054 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46493 * 90.00787 * 9 7 5 11 11 H 1.48499 * 109.47196 * 210.00302 * 9 7 5 12 12 H 1.48495 * 109.47087 * 330.00649 * 9 7 5 13 13 C 1.53000 * 109.46886 * 120.00434 * 2 1 3 14 14 H 1.09000 * 109.46968 * 179.97438 * 13 2 1 15 15 C 1.52996 * 109.47328 * 59.99799 * 13 2 1 16 16 C 1.53000 * 109.47328 * 179.97438 * 15 13 2 17 17 C 1.53002 * 109.47233 * 59.99531 * 16 15 13 18 18 C 1.53006 * 109.46977 * 300.00464 * 17 16 15 19 19 H 1.08998 * 109.46505 * 179.97438 * 18 17 16 20 20 C 1.52997 * 109.47127 * 299.99541 * 18 17 16 21 21 C 1.52992 * 109.47223 * 60.00047 * 18 17 16 22 22 H 1.08992 * 109.47514 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46652 * 299.99911 * 1 2 3 24 24 H 1.09004 * 109.47086 * 59.99712 * 1 2 3 25 25 H 0.97006 * 120.00223 * 265.00413 * 4 2 1 26 26 H 0.96997 * 120.00695 * 179.97438 * 8 7 5 27 27 H 1.09000 * 109.46870 * 299.99783 * 15 13 2 28 28 H 1.09001 * 109.47372 * 59.99633 * 15 13 2 29 29 H 1.08992 * 109.47399 * 179.97438 * 16 15 13 30 30 H 1.09004 * 109.46724 * 300.00183 * 16 15 13 31 31 H 1.08993 * 109.47662 * 180.02562 * 17 16 15 32 32 H 1.09000 * 109.46986 * 60.00203 * 17 16 15 33 33 H 1.09002 * 109.47153 * 180.02562 * 20 18 17 34 34 H 1.09001 * 109.46832 * 60.00321 * 20 18 17 35 35 H 1.09004 * 109.47261 * 300.00303 * 20 18 17 36 36 H 1.08996 * 109.47747 * 59.99547 * 21 18 17 37 37 H 1.09002 * 109.47103 * 179.97438 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3758 6 1 1.8919 1.0403 -2.4243 7 6 2.6112 -0.6620 -3.5093 8 7 2.7374 -0.0053 -4.6429 9 14 3.0554 -2.4745 -3.4255 10 1 1.8579 -3.2927 -3.7445 11 1 4.1304 -2.7667 -4.4074 12 1 3.5308 -2.8049 -2.0580 13 6 2.0399 -0.7214 1.2492 14 1 3.1300 -0.7218 1.2490 15 6 1.5299 -2.1638 1.2492 16 6 2.0404 -2.8853 2.4980 17 6 1.5310 -2.1643 3.7477 18 6 2.0411 -0.7218 3.7476 19 1 1.6779 -0.2080 4.6377 20 6 3.5711 -0.7218 3.7470 21 6 1.5306 -0.0003 2.4988 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 2.2489 -1.6319 -1.1527 26 1 3.0607 -0.4625 -5.4350 27 1 0.4399 -2.1637 1.2492 28 1 1.8932 -2.6776 0.3591 29 1 1.6767 -3.9128 2.4982 30 1 3.1304 -2.8853 2.4975 31 1 1.8950 -2.6780 4.6374 32 1 0.4410 -2.1642 3.7482 33 1 3.9345 0.3058 3.7474 34 1 3.9340 -1.2356 2.8567 35 1 3.9348 -1.2359 4.6368 36 1 0.4406 -0.0002 2.4992 37 1 1.8936 1.0275 2.4991 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307583388.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:18 Heat of formation + Delta-G solvation = -36.919870 kcal Electronic energy + Delta-G solvation = -14946.176585 eV Core-core repulsion = 12721.688605 eV Total energy + Delta-G solvation = -2224.487980 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.53205 -37.14014 -34.35333 -32.45960 -31.94229 -29.27260 -27.60939 -25.96603 -23.94659 -23.14939 -20.95797 -19.75379 -19.12888 -16.71844 -16.57587 -15.95335 -15.37219 -15.36608 -14.77806 -14.68546 -14.39151 -13.93442 -13.50034 -13.44960 -13.01993 -12.88803 -12.65252 -12.39823 -12.29318 -12.20305 -11.84029 -11.80029 -11.71640 -11.51288 -11.16524 -10.85447 -10.71638 -10.65723 -9.29089 -8.02377 -5.33838 1.34403 1.37711 1.45059 2.47256 3.28890 3.60857 3.84948 3.86631 3.94141 4.26399 4.39655 4.45097 4.53090 4.56852 4.70021 4.72596 4.76688 4.85373 4.90410 4.97028 5.07655 5.13686 5.19471 5.23754 5.26550 5.32003 5.38472 5.45586 5.54515 5.58532 5.63632 5.79025 5.79951 6.23239 7.09602 7.88265 8.07195 9.19796 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.040516 B = 0.008811 C = 0.008170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.922208 B = 3176.974026 C = 3426.455607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.171 3.829 3 H 0.034 0.966 4 N -0.752 5.752 5 C -0.225 4.225 6 H 0.054 0.946 7 C -0.067 4.067 8 N -0.986 5.986 9 Si 0.951 3.049 10 H -0.278 1.278 11 H -0.295 1.295 12 H -0.254 1.254 13 C -0.084 4.084 14 H 0.059 0.941 15 C -0.114 4.114 16 C -0.119 4.119 17 C -0.108 4.108 18 C -0.087 4.087 19 H 0.082 0.918 20 C -0.152 4.152 21 C -0.104 4.104 22 H 0.054 0.946 23 H 0.074 0.926 24 H 0.024 0.976 25 H 0.364 0.636 26 H 0.257 0.743 27 H 0.069 0.931 28 H 0.037 0.963 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.383 -5.346 20.222 21.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.063 3.937 3 H 0.052 0.948 4 N -0.396 5.396 5 C -0.357 4.357 6 H 0.072 0.928 7 C -0.258 4.258 8 N -0.638 5.638 9 Si 0.779 3.221 10 H -0.204 1.204 11 H -0.222 1.222 12 H -0.179 1.179 13 C -0.103 4.103 14 H 0.077 0.923 15 C -0.152 4.152 16 C -0.156 4.156 17 C -0.145 4.145 18 C -0.106 4.106 19 H 0.100 0.900 20 C -0.209 4.209 21 C -0.142 4.142 22 H 0.073 0.927 23 H 0.093 0.907 24 H 0.043 0.957 25 H 0.199 0.801 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.055 0.945 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.382 -5.165 20.094 20.883 hybrid contribution 0.411 -0.699 -1.014 1.298 sum -1.971 -5.864 19.080 20.058 Atomic orbital electron populations 1.22354 0.97553 1.01319 1.00410 1.20473 0.93006 0.94683 0.85493 0.94808 1.42909 1.79934 1.09712 1.07088 1.19078 1.34658 0.94400 0.87522 0.92791 1.25467 1.02678 1.02468 0.95195 1.69880 1.55096 1.37644 1.01145 0.85459 0.77783 0.80968 0.77921 1.20445 1.22154 1.17884 1.21324 0.99702 0.95378 0.93873 0.92295 1.21590 1.01085 0.94980 0.97534 1.21570 1.00733 0.98924 0.94378 1.21534 1.00730 0.94981 0.97295 1.21090 0.95683 0.96211 0.97584 0.89966 1.21943 0.95719 1.01532 1.01685 1.21616 1.01087 0.98509 0.92989 0.92736 0.90685 0.95658 0.80140 0.93450 0.91249 0.94472 0.91548 0.92262 0.90937 0.91566 0.93073 0.93319 0.91883 0.90875 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.45 8.79 71.98 0.63 -4.82 16 2 C 0.17 6.62 2.72 44.99 0.12 6.74 16 3 H 0.03 1.42 8.08 -2.39 -0.02 1.40 16 4 N -0.75 -36.22 4.85 -322.95 -1.56 -37.78 16 5 C -0.23 -13.27 10.41 84.03 0.87 -12.40 16 6 H 0.05 3.49 8.06 -2.91 -0.02 3.46 16 7 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 8 N -0.99 -64.89 13.97 21.65 0.30 -64.58 16 9 Si 0.95 46.93 27.74 68.60 1.90 48.83 16 10 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 11 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 12 H -0.25 -11.42 6.52 99.48 0.65 -10.77 16 13 C -0.08 -2.52 1.90 -10.79 -0.02 -2.54 16 14 H 0.06 1.93 6.43 -2.39 -0.02 1.92 16 15 C -0.11 -3.20 4.68 30.59 0.14 -3.06 16 16 C -0.12 -2.61 5.65 30.60 0.17 -2.44 16 17 C -0.11 -1.95 5.45 30.60 0.17 -1.78 16 18 C -0.09 -1.66 3.19 -10.79 -0.03 -1.70 16 19 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 20 C -0.15 -3.00 8.50 71.98 0.61 -2.39 16 21 C -0.10 -2.44 4.38 30.59 0.13 -2.30 16 22 H 0.05 1.81 6.43 -2.39 -0.02 1.79 16 23 H 0.07 2.08 6.43 -2.39 -0.02 2.07 16 24 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 25 H 0.36 16.91 3.92 -92.70 -0.36 16.55 16 26 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 27 H 0.07 1.86 6.43 -2.39 -0.02 1.85 16 28 H 0.04 1.20 6.51 -2.39 -0.02 1.19 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.06 1.35 6.43 -2.39 -0.02 1.33 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.05 1.12 4.81 -2.39 -0.01 1.10 16 35 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.07 1.60 6.43 -2.39 -0.02 1.59 16 37 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -66.99 271.85 4.52 -62.47 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.61 Total: 21.35 kcal Atomic # 6 Polarization: -33.56 SS G_CDS: 3.27 Total: -30.29 kcal Atomic # 7 Polarization: -101.11 SS G_CDS: -1.26 Total: -102.37 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 1.90 Total: 48.83 kcal Total: -66.99 4.52 -62.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307583388.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.550 kcal (2) G-P(sol) polarization free energy of solvation -66.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds