Wall clock time and date at job start Sun Mar 29 2020 21:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46728 * 2 1 4 4 N 1.46496 * 109.47588 * 240.00380 * 2 1 3 5 5 C 1.36934 * 120.00548 * 84.99655 * 4 2 1 6 6 H 1.08004 * 119.99288 * 0.02562 * 5 4 2 7 7 C 1.38805 * 120.00389 * 180.02562 * 5 4 2 8 8 N 1.31624 * 120.00257 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99929 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47174 * 270.00277 * 9 7 5 11 11 H 1.48501 * 109.47062 * 30.00228 * 9 7 5 12 12 H 1.48499 * 109.46981 * 150.00382 * 9 7 5 13 13 C 1.52998 * 109.47111 * 119.99949 * 2 1 3 14 14 H 1.09000 * 109.46632 * 60.00036 * 13 2 1 15 15 C 1.52998 * 109.47292 * 180.02562 * 13 2 1 16 16 C 1.52998 * 109.47292 * 180.02562 * 15 13 2 17 17 C 1.53006 * 109.47276 * 300.00068 * 16 15 13 18 18 C 1.53007 * 109.46894 * 59.99794 * 17 16 15 19 19 H 1.08994 * 109.47176 * 60.00131 * 18 17 16 20 20 C 1.52996 * 109.46925 * 180.02562 * 18 17 16 21 21 C 1.53002 * 109.46926 * 299.99853 * 18 17 16 22 22 H 1.08997 * 109.46674 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47478 * 300.00015 * 1 2 3 24 24 H 1.09005 * 109.46665 * 60.00353 * 1 2 3 25 25 H 0.96999 * 119.99694 * 265.00179 * 4 2 1 26 26 H 0.97001 * 119.99885 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.47121 * 299.99938 * 15 13 2 28 28 H 1.09002 * 109.46901 * 59.99834 * 15 13 2 29 29 H 1.08994 * 109.47416 * 180.02562 * 16 15 13 30 30 H 1.09007 * 109.46959 * 59.99745 * 16 15 13 31 31 H 1.09002 * 109.46965 * 300.00195 * 17 16 15 32 32 H 1.08993 * 109.47417 * 179.97438 * 17 16 15 33 33 H 1.08997 * 109.47261 * 179.97438 * 20 18 17 34 34 H 1.09001 * 109.46909 * 299.99757 * 20 18 17 35 35 H 1.09000 * 109.47312 * 59.99416 * 20 18 17 36 36 H 1.08994 * 109.47420 * 300.00129 * 21 18 17 37 37 H 1.09007 * 109.46811 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1961 5 6 2.1493 -0.0074 -2.3757 6 1 1.8927 1.0406 -2.4240 7 6 2.6115 -0.6618 -3.5092 8 7 2.7377 -0.0051 -4.6429 9 14 3.0560 -2.4743 -3.4253 10 1 4.4888 -2.6163 -3.0619 11 1 2.2164 -3.1428 -2.3989 12 1 2.8160 -3.1045 -4.7483 13 6 2.0400 -0.7212 1.2492 14 1 1.6766 -1.7489 1.2492 15 6 3.5700 -0.7207 1.2496 16 6 4.0800 -1.4425 2.4985 17 6 3.5694 -0.7222 3.7481 18 6 2.0394 -0.7227 3.7477 19 1 1.6764 -1.7505 3.7470 20 6 1.5288 -0.0019 4.9970 21 6 1.5294 -0.0008 2.4988 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 2.2491 -1.6316 -1.1526 26 1 3.0612 -0.4624 -5.4348 27 1 3.9337 -1.2343 0.3596 28 1 3.9329 0.3071 1.2498 29 1 5.1699 -1.4417 2.4990 30 1 3.7169 -2.4703 2.4978 31 1 3.9324 0.3057 3.7488 32 1 3.9323 -1.2366 4.6379 33 1 0.4389 -0.0019 4.9965 34 1 1.8921 -0.5158 5.8869 35 1 1.8919 1.0259 4.9973 36 1 1.8924 1.0269 2.4995 37 1 0.4394 -0.0008 2.4988 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307583389.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:20 Heat of formation + Delta-G solvation = -25.751306 kcal Electronic energy + Delta-G solvation = -14739.171876 eV Core-core repulsion = 12515.168201 eV Total energy + Delta-G solvation = -2224.003675 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.99134 -35.52495 -32.49795 -31.92712 -30.14820 -28.03730 -26.22256 -24.02090 -22.11307 -21.17623 -19.60564 -19.55684 -17.45748 -15.19925 -14.92909 -14.25197 -14.08300 -13.98264 -13.31569 -13.07050 -12.80417 -12.41681 -12.27069 -12.23770 -11.72373 -11.52453 -11.04090 -10.93735 -10.84999 -10.71245 -10.65956 -10.50161 -10.19058 -9.99693 -9.72989 -9.52282 -9.43038 -8.85210 -7.18496 -5.71543 -3.05391 3.40660 3.43924 3.48272 4.63926 4.79687 4.84372 4.94084 5.29381 5.33392 5.48788 5.55072 5.60527 5.63091 5.68926 5.74940 5.83988 5.88821 5.95794 6.04308 6.13842 6.16381 6.16996 6.32758 6.38122 6.45282 6.47230 6.55202 6.59428 6.71406 6.82740 6.97161 7.14525 8.06566 8.48360 9.27895 10.00855 10.21836 11.47318 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.043036 B = 0.008274 C = 0.007483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.466896 B = 3383.082839 C = 3740.904773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.181 3.819 3 H 0.053 0.947 4 N -0.748 5.748 5 C -0.236 4.236 6 H 0.089 0.911 7 C 0.002 3.998 8 N -0.937 5.937 9 Si 0.882 3.118 10 H -0.285 1.285 11 H -0.278 1.278 12 H -0.292 1.292 13 C -0.092 4.092 14 H 0.062 0.938 15 C -0.109 4.109 16 C -0.121 4.121 17 C -0.112 4.112 18 C -0.093 4.093 19 H 0.066 0.934 20 C -0.146 4.146 21 C -0.106 4.106 22 H 0.042 0.958 23 H 0.041 0.959 24 H 0.054 0.946 25 H 0.359 0.641 26 H 0.258 0.742 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.770 -2.048 17.809 17.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.072 3.928 3 H 0.071 0.929 4 N -0.390 5.390 5 C -0.366 4.366 6 H 0.107 0.893 7 C -0.193 4.193 8 N -0.586 5.586 9 Si 0.713 3.287 10 H -0.212 1.212 11 H -0.204 1.204 12 H -0.219 1.219 13 C -0.112 4.112 14 H 0.080 0.920 15 C -0.147 4.147 16 C -0.158 4.158 17 C -0.149 4.149 18 C -0.111 4.111 19 H 0.084 0.916 20 C -0.203 4.203 21 C -0.144 4.144 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.192 0.808 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.759 -1.862 17.619 17.733 hybrid contribution 0.290 -1.346 -0.174 1.387 sum -0.468 -3.208 17.444 17.743 Atomic orbital electron populations 1.22461 0.99239 1.00652 1.00247 1.20215 0.91623 0.95629 0.85305 0.92938 1.42796 1.79754 1.09299 1.07191 1.19090 1.36279 0.95456 0.85790 0.89323 1.24648 1.01765 0.97334 0.95592 1.69703 1.53113 1.35485 1.00269 0.86577 0.78431 0.87032 0.76696 1.21160 1.20374 1.21878 1.21421 0.95449 0.99582 0.94706 0.91964 1.21499 0.95269 1.00768 0.97114 1.21576 0.99779 0.99326 0.95148 1.21583 0.95205 1.00626 0.97499 1.21146 0.95475 0.99640 0.94851 0.91599 1.21828 1.00762 1.00426 0.97310 1.21661 1.00267 0.99213 0.93268 0.93839 0.93993 0.92700 0.80783 0.93194 0.91301 0.92158 0.92512 0.92492 0.92160 0.92794 0.92885 0.93175 0.92823 0.92082 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.99 9.14 37.16 0.34 -2.65 16 2 C 0.18 3.52 2.47 -67.93 -0.17 3.35 16 3 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 4 N -0.75 -17.81 4.23 -53.43 -0.23 -18.04 16 5 C -0.24 -6.72 10.41 -15.06 -0.16 -6.87 16 6 H 0.09 2.71 8.06 -52.48 -0.42 2.28 16 7 C 0.00 0.05 5.50 -17.43 -0.10 -0.04 16 8 N -0.94 -29.83 13.97 55.49 0.78 -29.05 16 9 Si 0.88 22.49 27.74 -169.99 -4.71 17.77 16 10 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 11 H -0.28 -6.70 6.52 56.52 0.37 -6.34 16 12 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 13 C -0.09 -1.46 1.82 -90.62 -0.17 -1.63 16 14 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 15 C -0.11 -1.73 5.05 -26.73 -0.13 -1.86 16 16 C -0.12 -1.57 5.92 -26.73 -0.16 -1.72 16 17 C -0.11 -1.27 5.20 -26.72 -0.14 -1.41 16 18 C -0.09 -1.05 2.72 -90.62 -0.25 -1.30 16 19 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 20 C -0.15 -1.41 9.19 37.16 0.34 -1.07 16 21 C -0.11 -1.39 4.13 -26.73 -0.11 -1.50 16 22 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.04 0.63 6.43 -51.93 -0.33 0.30 16 24 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.36 8.49 5.45 -40.82 -0.22 8.27 16 26 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 27 H 0.07 1.25 7.45 -51.93 -0.39 0.87 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.81 6.43 -51.93 -0.33 0.48 16 LS Contribution 284.28 15.07 4.28 4.28 Total: -1.00 -30.31 284.28 -7.36 -37.67 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -6.78 Total: 4.07 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -0.69 Total: -16.71 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: 0.55 Total: -47.09 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.71 Total: 17.77 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.31 -7.36 -37.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307583389.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.922 kcal (2) G-P(sol) polarization free energy of solvation -30.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds