Wall clock time and date at job start Sun Mar 29 2020 21:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46728 * 2 1 4 4 N 1.46496 * 109.47588 * 240.00380 * 2 1 3 5 5 C 1.36934 * 120.00548 * 84.99655 * 4 2 1 6 6 H 1.08004 * 119.99288 * 0.02562 * 5 4 2 7 7 C 1.38805 * 120.00389 * 180.02562 * 5 4 2 8 8 N 1.31624 * 120.00257 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99929 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47174 * 270.00277 * 9 7 5 11 11 H 1.48501 * 109.47062 * 30.00228 * 9 7 5 12 12 H 1.48499 * 109.46981 * 150.00382 * 9 7 5 13 13 C 1.52998 * 109.47111 * 119.99949 * 2 1 3 14 14 H 1.09000 * 109.46632 * 60.00036 * 13 2 1 15 15 C 1.52998 * 109.47292 * 180.02562 * 13 2 1 16 16 C 1.52998 * 109.47292 * 180.02562 * 15 13 2 17 17 C 1.53006 * 109.47276 * 300.00068 * 16 15 13 18 18 C 1.53007 * 109.46894 * 59.99794 * 17 16 15 19 19 H 1.08994 * 109.47176 * 60.00131 * 18 17 16 20 20 C 1.52996 * 109.46925 * 180.02562 * 18 17 16 21 21 C 1.53002 * 109.46926 * 299.99853 * 18 17 16 22 22 H 1.08997 * 109.46674 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47478 * 300.00015 * 1 2 3 24 24 H 1.09005 * 109.46665 * 60.00353 * 1 2 3 25 25 H 0.96999 * 119.99694 * 265.00179 * 4 2 1 26 26 H 0.97001 * 119.99885 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.47121 * 299.99938 * 15 13 2 28 28 H 1.09002 * 109.46901 * 59.99834 * 15 13 2 29 29 H 1.08994 * 109.47416 * 180.02562 * 16 15 13 30 30 H 1.09007 * 109.46959 * 59.99745 * 16 15 13 31 31 H 1.09002 * 109.46965 * 300.00195 * 17 16 15 32 32 H 1.08993 * 109.47417 * 179.97438 * 17 16 15 33 33 H 1.08997 * 109.47261 * 179.97438 * 20 18 17 34 34 H 1.09001 * 109.46909 * 299.99757 * 20 18 17 35 35 H 1.09000 * 109.47312 * 59.99416 * 20 18 17 36 36 H 1.08994 * 109.47420 * 300.00129 * 21 18 17 37 37 H 1.09007 * 109.46811 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1961 5 6 2.1493 -0.0074 -2.3757 6 1 1.8927 1.0406 -2.4240 7 6 2.6115 -0.6618 -3.5092 8 7 2.7377 -0.0051 -4.6429 9 14 3.0560 -2.4743 -3.4253 10 1 4.4888 -2.6163 -3.0619 11 1 2.2164 -3.1428 -2.3989 12 1 2.8160 -3.1045 -4.7483 13 6 2.0400 -0.7212 1.2492 14 1 1.6766 -1.7489 1.2492 15 6 3.5700 -0.7207 1.2496 16 6 4.0800 -1.4425 2.4985 17 6 3.5694 -0.7222 3.7481 18 6 2.0394 -0.7227 3.7477 19 1 1.6764 -1.7505 3.7470 20 6 1.5288 -0.0019 4.9970 21 6 1.5294 -0.0008 2.4988 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 2.2491 -1.6316 -1.1526 26 1 3.0612 -0.4624 -5.4348 27 1 3.9337 -1.2343 0.3596 28 1 3.9329 0.3071 1.2498 29 1 5.1699 -1.4417 2.4990 30 1 3.7169 -2.4703 2.4978 31 1 3.9324 0.3057 3.7488 32 1 3.9323 -1.2366 4.6379 33 1 0.4389 -0.0019 4.9965 34 1 1.8921 -0.5158 5.8869 35 1 1.8919 1.0259 4.9973 36 1 1.8924 1.0269 2.4995 37 1 0.4394 -0.0008 2.4988 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307583389.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:20 Heat of formation + Delta-G solvation = -43.331822 kcal Electronic energy + Delta-G solvation = -14739.934225 eV Core-core repulsion = 12515.168201 eV Total energy + Delta-G solvation = -2224.766023 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.17987 -37.10930 -34.35081 -33.07299 -31.94554 -29.46364 -27.22286 -25.78191 -23.66077 -22.29054 -21.19571 -20.60272 -19.50230 -16.76758 -16.39709 -15.74829 -15.39244 -15.23154 -14.73049 -14.40306 -14.27895 -14.10274 -13.71011 -13.24083 -13.15459 -12.90721 -12.62042 -12.39197 -12.20297 -12.03895 -11.94991 -11.80395 -11.78053 -11.57880 -11.23466 -11.02660 -10.79053 -10.66203 -9.27469 -8.01260 -5.32591 1.35890 1.39028 1.46376 2.48499 3.30405 3.57038 3.77543 3.89146 4.01676 4.23028 4.38685 4.42854 4.52176 4.64409 4.66152 4.73671 4.83385 4.86140 4.89705 4.99640 5.05283 5.09710 5.15712 5.23600 5.27414 5.35743 5.42479 5.44640 5.48508 5.57455 5.64960 5.74069 5.79723 6.23976 7.10292 7.88484 8.07589 9.20954 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.043036 B = 0.008274 C = 0.007483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.466896 B = 3383.082839 C = 3740.904773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.173 3.827 3 H 0.035 0.965 4 N -0.749 5.749 5 C -0.222 4.222 6 H 0.053 0.947 7 C -0.067 4.067 8 N -0.987 5.987 9 Si 0.953 3.047 10 H -0.279 1.279 11 H -0.254 1.254 12 H -0.297 1.297 13 C -0.083 4.083 14 H 0.065 0.935 15 C -0.110 4.110 16 C -0.116 4.116 17 C -0.109 4.109 18 C -0.090 4.090 19 H 0.069 0.931 20 C -0.143 4.143 21 C -0.102 4.102 22 H 0.048 0.952 23 H 0.076 0.924 24 H 0.026 0.974 25 H 0.363 0.637 26 H 0.256 0.744 27 H 0.040 0.960 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.011 -3.583 20.633 20.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.065 3.935 3 H 0.053 0.947 4 N -0.392 5.392 5 C -0.353 4.353 6 H 0.071 0.929 7 C -0.258 4.258 8 N -0.639 5.639 9 Si 0.780 3.220 10 H -0.205 1.205 11 H -0.179 1.179 12 H -0.223 1.223 13 C -0.102 4.102 14 H 0.083 0.917 15 C -0.147 4.147 16 C -0.154 4.154 17 C -0.146 4.146 18 C -0.108 4.108 19 H 0.087 0.913 20 C -0.200 4.200 21 C -0.140 4.140 22 H 0.067 0.933 23 H 0.094 0.906 24 H 0.046 0.954 25 H 0.196 0.804 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.019 -3.396 20.508 20.812 hybrid contribution 0.345 -0.751 -1.025 1.317 sum -0.674 -4.147 19.483 19.931 Atomic orbital electron populations 1.22331 0.97680 1.01091 1.00597 1.20486 0.92669 0.94918 0.85401 0.94672 1.42802 1.79985 1.09405 1.07050 1.19033 1.34490 0.94237 0.87551 0.92859 1.25455 1.02715 1.02417 0.95182 1.69888 1.55146 1.37647 1.01182 0.85438 0.78578 0.81046 0.76920 1.20503 1.17853 1.22346 1.21319 0.95367 0.99476 0.94011 0.91651 1.21473 0.95366 1.00228 0.97665 1.21537 1.00198 0.99317 0.94301 1.21577 0.95252 1.00565 0.97246 1.21125 0.95374 0.99756 0.94551 0.91257 1.21791 1.01110 1.00345 0.96751 1.21633 1.00721 0.98924 0.92677 0.93278 0.90567 0.95443 0.80382 0.93495 0.94106 0.93206 0.91904 0.91964 0.92301 0.90862 0.92364 0.91909 0.92783 0.92336 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.48 9.14 71.98 0.66 -4.82 16 2 C 0.17 6.64 2.47 44.99 0.11 6.75 16 3 H 0.04 1.47 8.08 -2.39 -0.02 1.45 16 4 N -0.75 -35.69 4.23 -322.95 -1.37 -37.05 16 5 C -0.22 -12.95 10.41 84.03 0.87 -12.08 16 6 H 0.05 3.42 8.06 -2.91 -0.02 3.40 16 7 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 8 N -0.99 -64.77 13.97 21.65 0.30 -64.47 16 9 Si 0.95 46.76 27.74 68.60 1.90 48.66 16 10 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 11 H -0.25 -11.32 6.52 99.48 0.65 -10.67 16 12 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 13 C -0.08 -2.48 1.82 -10.79 -0.02 -2.50 16 14 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 15 C -0.11 -3.36 5.05 30.59 0.15 -3.21 16 16 C -0.12 -2.73 5.92 30.60 0.18 -2.55 16 17 C -0.11 -2.13 5.20 30.60 0.16 -1.97 16 18 C -0.09 -1.72 2.72 -10.79 -0.03 -1.75 16 19 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 20 C -0.14 -2.23 9.19 71.98 0.66 -1.57 16 21 C -0.10 -2.39 4.13 30.60 0.13 -2.26 16 22 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 23 H 0.08 2.11 6.43 -2.39 -0.02 2.10 16 24 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 25 H 0.36 16.73 5.45 -92.71 -0.50 16.23 16 26 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 27 H 0.04 1.46 7.45 -2.39 -0.02 1.44 16 28 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.05 0.84 8.14 -2.39 -0.02 0.83 16 36 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.07 1.58 6.43 -2.38 -0.02 1.57 16 Total: -1.00 -66.41 284.28 4.63 -61.78 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 0.44 Total: 20.60 kcal Atomic # 6 Polarization: -32.86 SS G_CDS: 3.34 Total: -29.52 kcal Atomic # 7 Polarization: -100.45 SS G_CDS: -1.06 Total: -101.52 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.90 Total: 48.66 kcal Total: -66.41 4.63 -61.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307583389.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.452 kcal (2) G-P(sol) polarization free energy of solvation -66.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds