Wall clock time and date at job start Sun Mar 29 2020 21:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35732 * 116.99534 * 2 1 4 4 C 1.41772 * 126.77422 * 180.02562 * 3 2 1 5 5 C 1.36831 * 103.80248 * 180.20818 * 4 3 2 6 6 C 1.47330 * 126.88733 * 179.77894 * 5 4 3 7 7 O 1.21645 * 120.00334 * 359.97438 * 6 5 4 8 8 N 1.34783 * 119.99502 * 179.97438 * 6 5 4 9 9 C 1.36687 * 119.99676 * 180.02562 * 8 6 5 10 10 H 1.08007 * 120.00094 * 359.97438 * 9 8 6 11 11 C 1.39154 * 120.00124 * 179.97438 * 9 8 6 12 12 N 1.31301 * 119.99758 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00246 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47318 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47108 * 120.00066 * 13 11 9 16 16 H 1.48501 * 109.47424 * 239.99923 * 13 11 9 17 17 O 1.34687 * 106.21816 * 359.64396 * 5 4 3 18 18 N 1.20880 * 111.60922 * 0.39109 * 17 5 4 19 19 H 1.08998 * 109.47407 * 299.99852 * 1 2 3 20 20 H 1.09003 * 109.47254 * 60.00320 * 1 2 3 21 21 H 1.09007 * 109.46677 * 179.97438 * 1 2 3 22 22 H 1.08002 * 128.09306 * 359.93752 * 4 3 2 23 23 H 0.96991 * 119.99932 * 359.97438 * 8 6 5 24 24 H 0.97005 * 119.99723 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 3.4422 1.4502 -0.0005 5 6 3.5382 2.8151 0.0046 6 6 4.7758 3.6146 0.0109 7 8 5.8583 3.0598 0.0125 8 7 4.7083 4.9607 0.0149 9 6 5.8564 5.7025 0.0202 10 1 6.8176 5.2099 0.0216 11 6 5.7869 7.0923 0.0238 12 7 4.6184 7.6911 0.0216 13 14 7.3559 8.1060 0.0318 14 1 8.5314 7.1987 0.0326 15 1 7.3957 8.9659 -1.1782 16 1 7.3878 8.9593 1.2468 17 8 2.2746 3.2812 -0.0004 18 7 1.4680 2.3808 0.0000 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0278 -0.0005 22 1 4.2432 0.7258 0.0000 23 1 3.8451 5.4030 0.0132 24 1 4.5699 8.6599 0.0245 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307642521.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:46 Heat of formation + Delta-G solvation = -9.133229 kcal Electronic energy + Delta-G solvation = -13454.824290 eV Core-core repulsion = 10758.616034 eV Total energy + Delta-G solvation = -2696.208256 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.063 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.37453 -38.66720 -38.19067 -34.37157 -32.65207 -31.76394 -30.92909 -27.54619 -25.67346 -22.96459 -22.58382 -20.23132 -18.49770 -17.68235 -17.41016 -16.43879 -15.39640 -15.34724 -15.06621 -14.41384 -14.12244 -13.50127 -13.13991 -12.85665 -12.15931 -11.80683 -11.75465 -11.29043 -10.98656 -10.55064 -10.44376 -9.85975 -9.21540 -8.99098 -8.92745 -8.31195 -6.75694 -4.07231 1.42337 2.53520 2.93163 3.06730 3.14143 3.21039 3.45874 3.97812 3.98940 4.48901 4.82725 5.07257 5.10503 5.14511 5.28851 5.46961 5.79897 5.99013 6.26870 7.15620 7.24393 7.71031 8.22861 8.54091 8.83411 9.17608 9.69653 10.39265 Molecular weight = 212.06amu Principal moments of inertia in cm(-1) A = 0.082879 B = 0.006636 C = 0.006165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 337.760662 B = 4218.234026 C = 4540.843307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.286 6.286 3 C 0.201 3.799 4 C -0.203 4.203 5 C -0.005 4.005 6 C 0.487 3.513 7 O -0.576 6.576 8 N -0.515 5.515 9 C -0.297 4.297 10 H 0.115 0.885 11 C 0.029 3.971 12 N -0.870 5.870 13 Si 0.940 3.060 14 H -0.263 1.263 15 H -0.277 1.277 16 H -0.277 1.277 17 O 0.099 5.901 18 N -0.413 5.413 19 H 0.057 0.943 20 H 0.057 0.943 21 H 0.101 0.899 22 H 0.180 0.820 23 H 0.401 0.599 24 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.937 -6.810 -0.024 9.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.193 6.193 3 C 0.004 3.996 4 C -0.228 4.228 5 C -0.071 4.071 6 C 0.272 3.728 7 O -0.462 6.462 8 N -0.148 5.148 9 C -0.427 4.427 10 H 0.133 0.867 11 C -0.178 4.178 12 N -0.508 5.508 13 Si 0.766 3.234 14 H -0.187 1.187 15 H -0.202 1.202 16 H -0.202 1.202 17 O 0.039 5.961 18 N -0.141 5.141 19 H 0.076 0.924 20 H 0.076 0.924 21 H 0.120 0.880 22 H 0.198 0.802 23 H 0.236 0.764 24 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.432 -6.818 -0.023 9.373 hybrid contribution 0.433 0.350 0.002 0.557 sum -5.998 -6.468 -0.021 8.821 Atomic orbital electron populations 1.23001 0.77437 1.03560 1.02258 1.86172 1.22124 1.21170 1.89803 1.21871 0.90853 0.85556 1.01277 1.21898 0.93571 0.95166 1.12120 1.24818 0.86532 0.94097 1.01696 1.16023 0.84526 0.82393 0.89835 1.90702 1.25735 1.70542 1.59265 1.41896 1.10621 1.04022 1.58237 1.20002 0.87546 0.88192 1.46925 0.86688 1.25554 0.99157 0.97155 0.95902 1.69595 1.24302 1.11463 1.45486 0.85627 0.80492 0.79188 0.78113 1.18652 1.20247 1.20242 1.84933 1.12544 1.29445 1.69202 1.73905 1.16646 0.96483 1.27096 0.92419 0.92426 0.88050 0.80222 0.76419 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.73 101.05 1.08 1.45 14 2 O -0.29 -4.43 10.57 -18.90 -0.20 -4.63 14 3 C 0.20 3.63 7.99 -16.74 -0.13 3.50 14 4 C -0.20 -3.85 10.97 -38.74 -0.43 -4.28 14 5 C 0.00 -0.10 7.28 -36.39 -0.27 -0.37 14 6 C 0.49 11.83 7.76 -12.56 -0.10 11.73 14 7 O -0.58 -15.53 16.48 5.24 0.09 -15.45 14 8 N -0.52 -12.89 5.27 -12.00 -0.06 -12.96 14 9 C -0.30 -7.79 9.68 -15.05 -0.15 -7.94 14 10 H 0.12 3.11 7.15 -52.48 -0.38 2.73 14 11 C 0.03 0.71 5.50 -17.44 -0.10 0.62 14 12 N -0.87 -22.18 13.04 55.51 0.72 -21.46 14 13 Si 0.94 19.36 29.55 -169.99 -5.02 14.33 14 14 H -0.26 -5.39 7.11 56.52 0.40 -4.99 14 15 H -0.28 -5.61 7.11 56.52 0.40 -5.21 14 16 H -0.28 -5.61 7.11 56.52 0.40 -5.21 14 17 O 0.10 1.99 11.03 15.43 0.17 2.16 14 18 N -0.41 -7.83 11.50 30.48 0.35 -7.48 14 19 H 0.06 0.64 8.14 -51.93 -0.42 0.22 14 20 H 0.06 0.64 8.14 -51.93 -0.42 0.22 14 21 H 0.10 0.80 8.14 -51.93 -0.42 0.37 14 22 H 0.18 3.11 8.06 -52.49 -0.42 2.68 14 23 H 0.40 9.70 7.71 -40.82 -0.31 9.39 14 24 H 0.28 6.64 8.31 -40.82 -0.34 6.30 14 LS Contribution 234.34 15.07 3.53 3.53 Total: -1.00 -28.70 234.34 -2.02 -30.72 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -1.52 Total: 6.52 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -0.08 Total: 4.72 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 1.01 Total: -41.90 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: 0.06 Total: -17.92 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.33 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -28.70 -2.02 -30.72 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307642521.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.586 kcal (2) G-P(sol) polarization free energy of solvation -28.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds