Wall clock time and date at job start Sun Mar 29 2020 21:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34778 * 120.00309 * 2 1 4 4 O 1.21856 * 119.99988 * 179.97438 * 3 2 1 5 5 C 1.41239 * 119.99801 * 0.02562 * 3 2 1 6 6 H 1.07997 * 120.00111 * 359.97438 * 5 3 2 7 7 C 1.40157 * 119.99777 * 179.97438 * 5 3 2 8 8 N 1.30624 * 120.00318 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99792 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47339 * 89.99703 * 9 7 5 11 11 H 1.48501 * 109.46784 * 210.00042 * 9 7 5 12 12 H 1.48501 * 109.47130 * 329.99669 * 9 7 5 13 13 C 1.37927 * 119.99893 * 180.02562 * 2 1 3 14 14 N 1.30344 * 125.43963 * 179.97438 * 13 2 1 15 15 C 1.31243 * 117.06779 * 179.97438 * 14 13 2 16 16 C 1.34211 * 115.74609 * 359.97438 * 15 14 13 17 17 S 1.76159 * 125.43769 * 359.97438 * 13 2 1 18 18 H 1.09005 * 109.46670 * 269.99598 * 1 2 3 19 19 H 1.09005 * 109.47254 * 29.99161 * 1 2 3 20 20 H 1.08996 * 109.47762 * 149.99384 * 1 2 3 21 21 H 0.96994 * 120.00097 * 179.97438 * 8 7 5 22 22 H 1.08000 * 122.13166 * 179.97438 * 15 14 13 23 23 H 1.07995 * 125.90352 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3575 1.1671 0.0005 5 6 1.4327 2.3904 0.0005 6 1 0.3528 2.3904 0.0005 7 6 2.1336 3.6041 0.0011 8 7 3.4398 3.6041 0.0016 9 14 1.1996 5.2219 0.0011 10 1 0.9515 5.6503 1.4011 11 1 2.0025 6.2569 -0.6984 12 1 -0.0977 5.0445 -0.6996 13 6 2.1546 -1.1945 -0.0005 14 7 3.4521 -1.3181 -0.0011 15 6 3.9359 -2.5381 -0.0010 16 6 3.0270 -3.5256 0.0001 17 16 1.4223 -2.7967 -0.0006 18 1 -0.3633 -0.0001 1.0277 19 1 -0.3634 0.8901 -0.5137 20 1 -0.3634 -0.8899 -0.5139 21 1 3.9248 4.4441 0.0016 22 1 4.9978 -2.7350 -0.0018 23 1 3.2417 -4.5840 0.0000 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307691772.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:52 Heat of formation + Delta-G solvation = 26.425726 kcal Electronic energy + Delta-G solvation = -11824.931211 eV Core-core repulsion = 9573.017778 eV Total energy + Delta-G solvation = -2251.913433 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.036 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.16015 -37.42785 -34.31268 -32.66917 -29.29463 -26.97423 -26.04660 -23.90182 -21.18517 -18.79107 -17.38602 -16.43489 -15.79672 -15.16444 -14.83229 -14.15557 -14.06449 -12.90081 -12.70905 -12.46684 -11.98872 -11.79236 -11.40442 -11.10561 -10.83709 -10.49216 -10.35325 -9.52120 -8.95384 -8.83361 -8.62735 -7.63380 -7.04726 -6.42450 -4.98769 1.53508 1.75353 2.39063 3.02223 3.09117 3.12691 3.72280 3.78784 4.04506 4.38611 5.39796 5.55921 5.68073 5.77158 6.02444 6.16919 6.17582 6.72403 7.02849 7.17852 7.86361 7.95699 8.62650 8.72077 9.11030 10.31257 10.50673 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.064808 B = 0.009236 C = 0.008119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.939247 B = 3031.004544 C = 3447.800054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.528 5.528 3 C 0.531 3.469 4 O -0.513 6.513 5 C -0.532 4.532 6 H 0.077 0.923 7 C 0.085 3.915 8 N -0.742 5.742 9 Si 0.916 3.084 10 H -0.269 1.269 11 H -0.276 1.276 12 H -0.262 1.262 13 C 0.358 3.642 14 N -0.497 5.497 15 C 0.087 3.913 16 C -0.317 4.317 17 S -0.015 6.015 18 H 0.057 0.943 19 H 0.096 0.904 20 H 0.056 0.944 21 H 0.275 0.725 22 H 0.164 0.836 23 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.194 -6.808 -0.096 9.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.258 5.258 3 C 0.339 3.661 4 O -0.390 6.390 5 C -0.567 4.567 6 H 0.096 0.904 7 C -0.138 4.138 8 N -0.370 5.370 9 Si 0.740 3.260 10 H -0.194 1.194 11 H -0.201 1.201 12 H -0.186 1.186 13 C -0.011 4.011 14 N -0.219 5.219 15 C -0.066 4.066 16 C -0.458 4.458 17 S 0.231 5.769 18 H 0.076 0.924 19 H 0.114 0.886 20 H 0.075 0.925 21 H 0.086 0.914 22 H 0.181 0.819 23 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -6.076 -6.441 -0.100 8.855 hybrid contribution 0.321 0.392 0.022 0.507 sum -5.755 -6.049 -0.078 8.350 Atomic orbital electron populations 1.21892 0.79097 1.03138 1.02053 1.46415 1.06706 1.02571 1.70147 1.17337 0.88013 0.81122 0.79646 1.90809 1.12814 1.83564 1.51765 1.20036 0.94509 0.89340 1.52849 0.90445 1.25815 0.94715 1.00790 0.92523 1.70009 1.07352 1.28193 1.31400 0.86217 0.80121 0.80506 0.79140 1.19402 1.20140 1.18565 1.25248 0.89634 0.90078 0.96170 1.66729 1.08385 1.22457 1.24310 1.21704 1.00889 0.85858 0.98181 1.26345 0.92889 1.03320 1.23240 1.84546 1.12119 1.03105 1.77123 0.92408 0.88557 0.92505 0.91384 0.81902 0.81759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.45 9.83 59.84 0.59 2.03 14 2 N -0.53 -12.57 3.05 -126.73 -0.39 -12.95 14 3 C 0.53 15.18 7.40 -15.12 -0.11 15.07 14 4 O -0.51 -16.83 13.50 5.05 0.07 -16.76 14 5 C -0.53 -14.24 8.56 -37.72 -0.32 -14.56 14 6 H 0.08 1.82 5.87 -52.49 -0.31 1.51 14 7 C 0.09 2.26 5.50 -17.35 -0.10 2.16 14 8 N -0.74 -21.42 11.72 55.56 0.65 -20.77 14 9 Si 0.92 18.90 29.56 -169.99 -5.02 13.87 14 10 H -0.27 -5.43 7.11 56.52 0.40 -5.03 14 11 H -0.28 -5.61 7.11 56.52 0.40 -5.21 14 12 H -0.26 -5.15 7.11 56.52 0.40 -4.75 14 13 C 0.36 8.24 7.84 -87.80 -0.69 7.55 14 14 N -0.50 -12.27 8.65 -13.94 -0.12 -12.39 14 15 C 0.09 1.69 11.27 -19.22 -0.22 1.47 14 16 C -0.32 -5.30 11.37 29.31 0.33 -4.97 14 17 S -0.01 -0.26 22.03 -107.50 -2.37 -2.63 14 18 H 0.06 0.92 8.14 -51.93 -0.42 0.50 14 19 H 0.10 1.65 6.08 -51.93 -0.32 1.33 14 20 H 0.06 0.85 7.09 -51.93 -0.37 0.49 14 21 H 0.28 7.13 8.29 -40.82 -0.34 6.79 14 22 H 0.16 2.67 8.06 -52.49 -0.42 2.25 14 23 H 0.16 2.15 8.06 -52.49 -0.42 1.73 14 LS Contribution 223.18 15.07 3.36 3.36 Total: -1.00 -34.17 223.18 -5.73 -39.89 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: -1.39 Total: -0.39 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -0.51 Total: 8.76 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: 0.14 Total: -46.11 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: 0.07 Total: -16.76 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.02 Total: 13.87 kcal Atomic # 16 Polarization: -0.26 SS G_CDS: -2.37 Total: -2.63 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -34.17 -5.73 -39.89 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307691772.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.317 kcal (2) G-P(sol) polarization free energy of solvation -34.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds