Wall clock time and date at job start Sun Mar 29 2020 21:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34778 * 120.00309 * 2 1 4 4 O 1.21856 * 119.99988 * 179.97438 * 3 2 1 5 5 C 1.41239 * 119.99801 * 0.02562 * 3 2 1 6 6 H 1.07997 * 120.00111 * 359.97438 * 5 3 2 7 7 C 1.40157 * 119.99777 * 179.97438 * 5 3 2 8 8 N 1.30624 * 120.00318 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99792 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47339 * 89.99703 * 9 7 5 11 11 H 1.48501 * 109.46784 * 210.00042 * 9 7 5 12 12 H 1.48501 * 109.47130 * 329.99669 * 9 7 5 13 13 C 1.37927 * 119.99893 * 180.02562 * 2 1 3 14 14 N 1.30344 * 125.43963 * 179.97438 * 13 2 1 15 15 C 1.31243 * 117.06779 * 179.97438 * 14 13 2 16 16 C 1.34211 * 115.74609 * 359.97438 * 15 14 13 17 17 S 1.76159 * 125.43769 * 359.97438 * 13 2 1 18 18 H 1.09005 * 109.46670 * 269.99598 * 1 2 3 19 19 H 1.09005 * 109.47254 * 29.99161 * 1 2 3 20 20 H 1.08996 * 109.47762 * 149.99384 * 1 2 3 21 21 H 0.96994 * 120.00097 * 179.97438 * 8 7 5 22 22 H 1.08000 * 122.13166 * 179.97438 * 15 14 13 23 23 H 1.07995 * 125.90352 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3575 1.1671 0.0005 5 6 1.4327 2.3904 0.0005 6 1 0.3528 2.3904 0.0005 7 6 2.1336 3.6041 0.0011 8 7 3.4398 3.6041 0.0016 9 14 1.1996 5.2219 0.0011 10 1 0.9515 5.6503 1.4011 11 1 2.0025 6.2569 -0.6984 12 1 -0.0977 5.0445 -0.6996 13 6 2.1546 -1.1945 -0.0005 14 7 3.4521 -1.3181 -0.0011 15 6 3.9359 -2.5381 -0.0010 16 6 3.0270 -3.5256 0.0001 17 16 1.4223 -2.7967 -0.0006 18 1 -0.3633 -0.0001 1.0277 19 1 -0.3634 0.8901 -0.5137 20 1 -0.3634 -0.8899 -0.5139 21 1 3.9248 4.4441 0.0016 22 1 4.9978 -2.7350 -0.0018 23 1 3.2417 -4.5840 0.0000 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307691772.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:51 Heat of formation + Delta-G solvation = 1.903884 kcal Electronic energy + Delta-G solvation = -11825.994558 eV Core-core repulsion = 9573.017778 eV Total energy + Delta-G solvation = -2252.976780 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.036 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.86801 -39.19481 -36.17296 -34.70847 -30.87172 -28.90530 -27.57470 -25.60886 -22.88340 -20.52297 -18.95091 -18.30980 -17.64166 -16.84249 -16.50454 -15.84827 -15.55062 -14.51924 -14.48237 -14.00662 -13.63047 -13.47227 -13.20177 -12.74691 -12.46361 -12.16561 -12.01073 -11.17921 -10.87388 -10.53082 -10.11709 -9.63396 -8.68550 -8.39101 -7.05592 -0.00432 0.19915 0.93846 1.41298 1.42068 1.59243 2.10916 2.17230 2.41442 2.47201 3.60682 3.90752 4.31294 4.53258 4.61750 4.70959 4.79082 5.23240 5.27446 5.40812 5.91849 6.14788 6.70012 6.93758 7.38120 8.34429 8.54216 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.064808 B = 0.009236 C = 0.008119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.939247 B = 3031.004544 C = 3447.800054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.545 5.545 3 C 0.514 3.486 4 O -0.577 6.577 5 C -0.553 4.553 6 H 0.107 0.893 7 C 0.027 3.973 8 N -0.801 5.801 9 Si 1.007 2.993 10 H -0.260 1.260 11 H -0.274 1.274 12 H -0.240 1.240 13 C 0.302 3.698 14 N -0.554 5.554 15 C 0.048 3.952 16 C -0.285 4.285 17 S 0.076 5.924 18 H 0.074 0.926 19 H 0.098 0.902 20 H 0.084 0.916 21 H 0.280 0.720 22 H 0.182 0.818 23 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.627 -7.962 -0.106 11.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.275 5.275 3 C 0.323 3.677 4 O -0.459 6.459 5 C -0.588 4.588 6 H 0.125 0.875 7 C -0.191 4.191 8 N -0.430 5.430 9 Si 0.825 3.175 10 H -0.184 1.184 11 H -0.199 1.199 12 H -0.163 1.163 13 C -0.065 4.065 14 N -0.278 5.278 15 C -0.103 4.103 16 C -0.426 4.426 17 S 0.322 5.678 18 H 0.092 0.908 19 H 0.117 0.883 20 H 0.102 0.898 21 H 0.090 0.910 22 H 0.199 0.801 23 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -8.563 -7.676 -0.111 11.500 hybrid contribution 1.071 0.462 0.027 1.166 sum -7.492 -7.214 -0.084 10.401 Atomic orbital electron populations 1.22126 0.75954 1.04619 1.03581 1.45982 1.08546 1.02205 1.70766 1.17775 0.87662 0.83145 0.79121 1.90745 1.15286 1.85486 1.54373 1.20631 0.96076 0.89517 1.52573 0.87506 1.27191 0.95494 1.05493 0.90935 1.70200 1.10037 1.29685 1.33051 0.84886 0.78935 0.74071 0.79654 1.18419 1.19915 1.16262 1.25431 0.90325 0.92141 0.98637 1.66648 1.10685 1.25864 1.24562 1.22001 1.02514 0.85175 1.00629 1.27058 0.92312 1.05008 1.18189 1.84118 1.10761 0.97926 1.74989 0.90752 0.88324 0.89772 0.91011 0.80107 0.77158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.67 9.83 127.77 1.26 3.93 14 2 N -0.54 -26.27 3.05 -673.01 -2.05 -28.32 14 3 C 0.51 30.57 7.40 84.98 0.63 31.20 14 4 O -0.58 -40.14 13.50 -4.85 -0.07 -40.21 14 5 C -0.55 -30.09 8.56 23.47 0.20 -29.89 14 6 H 0.11 4.93 5.87 -2.91 -0.02 4.91 14 7 C 0.03 1.46 5.50 85.34 0.47 1.93 14 8 N -0.80 -48.32 11.72 21.85 0.26 -48.07 14 9 Si 1.01 38.61 29.56 68.60 2.03 40.64 14 10 H -0.26 -9.50 7.11 99.48 0.71 -8.79 14 11 H -0.27 -10.30 7.11 99.48 0.71 -9.59 14 12 H -0.24 -8.27 7.11 99.48 0.71 -7.56 14 13 C 0.30 13.97 7.84 179.36 1.41 15.37 14 14 N -0.55 -28.11 8.65 -198.02 -1.71 -29.83 14 15 C 0.05 1.83 11.27 83.86 0.95 2.78 14 16 C -0.28 -8.56 11.37 66.90 0.76 -7.80 14 17 S 0.08 2.41 22.03 -56.49 -1.24 1.16 14 18 H 0.07 2.23 8.14 -2.38 -0.02 2.21 14 19 H 0.10 3.23 6.08 -2.38 -0.01 3.22 14 20 H 0.08 2.32 7.09 -2.39 -0.02 2.30 14 21 H 0.28 15.17 8.29 -92.71 -0.77 14.40 14 22 H 0.18 5.90 8.06 -2.91 -0.02 5.88 14 23 H 0.21 4.29 8.06 -2.91 -0.02 4.27 14 Total: -1.00 -79.97 223.18 4.11 -75.86 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 1.24 Total: 11.25 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: 5.67 Total: 17.52 kcal Atomic # 7 Polarization: -102.70 SS G_CDS: -3.51 Total: -106.21 kcal Atomic # 8 Polarization: -40.14 SS G_CDS: -0.07 Total: -40.21 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -1.24 Total: 1.16 kcal Total: -79.97 4.11 -75.86 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307691772.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.763 kcal (2) G-P(sol) polarization free energy of solvation -79.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds