Wall clock time and date at job start Sun Mar 29 2020 21:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86799 * 119.99906 * 2 1 4 4 H 1.48504 * 109.47256 * 239.99996 * 3 2 1 5 5 H 1.48500 * 109.47127 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47238 * 120.00170 * 3 2 1 7 7 C 1.38950 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99782 * 180.02562 * 7 2 1 9 9 N 1.37094 * 120.00049 * 359.97438 * 7 2 1 10 10 C 1.34775 * 119.99917 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00455 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00026 * 179.97438 * 10 9 7 13 13 H 1.09002 * 109.67165 * 300.00270 * 12 10 9 14 14 C 1.53345 * 109.67543 * 179.50348 * 12 10 9 15 15 C 1.52924 * 108.67385 * 172.70308 * 14 12 10 16 16 N 1.45748 * 110.48822 * 50.75489 * 15 14 12 17 17 C 1.33356 * 124.10852 * 340.90040 * 16 15 14 18 18 O 1.21280 * 118.25062 * 182.27595 * 17 16 15 19 19 C 1.50266 * 123.51821 * 2.26056 * 17 16 15 20 20 H 0.97000 * 120.00095 * 359.97438 * 1 2 3 21 21 H 0.96993 * 119.99962 * 359.97438 * 9 7 2 22 22 H 1.09001 * 109.60132 * 292.45469 * 14 12 10 23 23 H 1.08996 * 109.60241 * 52.94547 * 14 12 10 24 24 H 1.08998 * 109.29813 * 171.06508 * 15 14 12 25 25 H 1.08999 * 109.29882 * 290.43759 * 15 14 12 26 26 H 0.96998 * 117.94693 * 160.92778 * 16 15 14 27 27 H 1.08995 * 109.43193 * 222.27970 * 19 17 16 28 28 H 1.08994 * 109.41123 * 102.51038 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7464 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0001 12 6 1.2438 -4.8629 0.0000 13 1 0.6162 -4.9239 0.8892 14 6 2.2361 -6.0320 -0.0126 15 6 1.4589 -7.3359 0.1722 16 7 0.3507 -7.4074 -0.7717 17 6 -0.1636 -6.3510 -1.4025 18 8 -1.1140 -6.5266 -2.1352 19 6 0.3711 -4.9546 -1.2541 20 1 -0.4850 0.8400 0.0004 21 1 0.3535 -2.3906 0.0002 22 1 2.7643 -6.0530 -0.9659 23 1 2.9509 -5.9137 0.8017 24 1 2.1279 -8.1805 0.0070 25 1 1.0697 -7.3823 1.1893 26 1 -0.0375 -8.2779 -0.9520 27 1 -0.4604 -4.2551 -1.1685 28 1 0.9679 -4.7002 -2.1300 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307699695.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:36 Heat of formation + Delta-G solvation = -89.580382 kcal Electronic energy + Delta-G solvation = -14036.714360 eV Core-core repulsion = 11472.850748 eV Total energy + Delta-G solvation = -2563.863612 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.20189 -38.25809 -35.99915 -34.02356 -32.78518 -31.18565 -29.40135 -25.72532 -24.27127 -22.62648 -19.44783 -18.84361 -17.97923 -17.17112 -16.10116 -15.84143 -15.07392 -14.54874 -14.23101 -14.20898 -13.75251 -13.20969 -12.82967 -12.62519 -11.71568 -11.59741 -11.33626 -11.10025 -10.75135 -10.72664 -10.47049 -10.23151 -9.81523 -9.55955 -9.03142 -8.40936 -8.03317 -6.46495 -3.88092 2.79423 3.16703 3.23997 3.27817 3.38903 3.79000 4.12271 4.63477 4.80605 4.88762 5.02719 5.28846 5.29914 5.51408 5.52422 5.62599 5.92668 6.05310 6.23731 6.36704 6.46932 6.83532 7.39709 7.50396 7.99185 8.32662 8.53206 9.11298 9.47351 9.97303 10.70592 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.051491 B = 0.007659 C = 0.006885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.653948 B = 3655.152813 C = 4066.068419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.932 3.068 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.305 4.305 8 H 0.104 0.896 9 N -0.555 5.555 10 C 0.442 3.558 11 O -0.594 6.594 12 C -0.102 4.102 13 H 0.089 0.911 14 C -0.112 4.112 15 C 0.109 3.891 16 N -0.722 5.722 17 C 0.525 3.475 18 O -0.564 6.564 19 C -0.126 4.126 20 H 0.274 0.726 21 H 0.393 0.607 22 H 0.075 0.925 23 H 0.093 0.907 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.395 0.605 27 H 0.106 0.894 28 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.510 -10.700 1.316 10.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.177 4.177 3 Si 0.758 3.242 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.435 4.435 8 H 0.121 0.879 9 N -0.190 5.190 10 C 0.228 3.772 11 O -0.480 6.480 12 C -0.124 4.124 13 H 0.107 0.893 14 C -0.150 4.150 15 C -0.015 4.015 16 N -0.374 5.374 17 C 0.313 3.687 18 O -0.443 6.443 19 C -0.166 4.166 20 H 0.084 0.916 21 H 0.227 0.773 22 H 0.094 0.906 23 H 0.111 0.889 24 H 0.094 0.906 25 H 0.083 0.917 26 H 0.230 0.770 27 H 0.124 0.876 28 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.789 -10.363 0.991 10.440 hybrid contribution -0.301 0.533 0.041 0.614 sum 0.488 -9.830 1.032 9.896 Atomic orbital electron populations 1.69600 1.05975 1.28495 1.49729 1.25288 0.95625 0.99825 0.96984 0.85908 0.78787 0.80368 0.79104 1.19833 1.20921 1.19854 1.19682 0.93397 0.82249 1.48142 0.87868 1.41906 1.09297 1.04656 1.63149 1.19631 0.88072 0.84556 0.84976 1.90520 1.13766 1.87150 1.56595 1.21285 0.97266 0.95494 0.98355 0.89288 1.21635 0.97474 0.91139 1.04745 1.21482 0.88123 0.99373 0.92501 1.45496 1.36135 1.10215 1.45545 1.20287 0.82304 0.87438 0.78664 1.90733 1.28250 1.86083 1.39193 1.21697 1.01452 0.93331 1.00129 0.91639 0.77308 0.90594 0.88871 0.90573 0.91657 0.77028 0.87560 0.87750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.10 13.05 55.50 0.72 -23.37 15 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 15 3 Si 0.93 20.70 29.55 -169.99 -5.02 15.68 15 4 H -0.27 -6.04 7.11 56.52 0.40 -5.63 15 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 15 7 C -0.31 -8.32 9.68 -14.93 -0.14 -8.46 15 8 H 0.10 2.93 7.16 -52.48 -0.38 2.56 15 9 N -0.56 -13.65 5.20 -10.96 -0.06 -13.71 15 10 C 0.44 9.92 7.08 -10.98 -0.08 9.84 15 11 O -0.59 -15.34 15.47 5.54 0.09 -15.25 15 12 C -0.10 -1.68 2.60 -91.56 -0.24 -1.92 15 13 H 0.09 1.35 8.13 -51.93 -0.42 0.92 15 14 C -0.11 -1.54 4.71 -26.59 -0.13 -1.67 15 15 C 0.11 1.11 7.17 -4.49 -0.03 1.08 15 16 N -0.72 -8.66 5.45 -61.36 -0.33 -8.99 15 17 C 0.53 8.25 7.72 -11.83 -0.09 8.16 15 18 O -0.56 -10.83 17.78 5.56 0.10 -10.73 15 19 C -0.13 -2.03 5.21 -28.06 -0.15 -2.18 15 20 H 0.27 6.98 8.31 -40.82 -0.34 6.64 15 21 H 0.39 9.33 7.63 -40.82 -0.31 9.01 15 22 H 0.08 1.11 8.12 -51.93 -0.42 0.69 15 23 H 0.09 1.32 7.89 -51.93 -0.41 0.91 15 24 H 0.08 0.59 8.14 -51.93 -0.42 0.17 15 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 15 26 H 0.40 4.04 8.80 -40.82 -0.36 3.68 15 27 H 0.11 1.75 7.94 -51.93 -0.41 1.34 15 28 H 0.10 1.74 8.09 -51.93 -0.42 1.32 15 LS Contribution 245.85 15.07 3.70 3.70 Total: -1.00 -32.03 245.85 -4.86 -36.89 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -3.11 Total: 10.37 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -0.95 Total: 5.42 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: 0.33 Total: -46.08 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: 0.18 Total: -25.98 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -32.03 -4.86 -36.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307699695.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.689 kcal (2) G-P(sol) polarization free energy of solvation -32.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds