Wall clock time and date at job start Sun Mar 29 2020 21:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86799 * 119.99906 * 2 1 4 4 H 1.48504 * 109.47256 * 239.99996 * 3 2 1 5 5 H 1.48500 * 109.47127 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47238 * 120.00170 * 3 2 1 7 7 C 1.38950 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99782 * 180.02562 * 7 2 1 9 9 N 1.37094 * 120.00049 * 359.97438 * 7 2 1 10 10 C 1.34775 * 119.99917 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00455 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00026 * 179.97438 * 10 9 7 13 13 H 1.09002 * 109.67165 * 300.00270 * 12 10 9 14 14 C 1.53345 * 109.67543 * 179.50348 * 12 10 9 15 15 C 1.52924 * 108.67385 * 172.70308 * 14 12 10 16 16 N 1.45748 * 110.48822 * 50.75489 * 15 14 12 17 17 C 1.33356 * 124.10852 * 340.90040 * 16 15 14 18 18 O 1.21280 * 118.25062 * 182.27595 * 17 16 15 19 19 C 1.50266 * 123.51821 * 2.26056 * 17 16 15 20 20 H 0.97000 * 120.00095 * 359.97438 * 1 2 3 21 21 H 0.96993 * 119.99962 * 359.97438 * 9 7 2 22 22 H 1.09001 * 109.60132 * 292.45469 * 14 12 10 23 23 H 1.08996 * 109.60241 * 52.94547 * 14 12 10 24 24 H 1.08998 * 109.29813 * 171.06508 * 15 14 12 25 25 H 1.08999 * 109.29882 * 290.43759 * 15 14 12 26 26 H 0.96998 * 117.94693 * 160.92778 * 16 15 14 27 27 H 1.08995 * 109.43193 * 222.27970 * 19 17 16 28 28 H 1.08994 * 109.41123 * 102.51038 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7464 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0001 12 6 1.2438 -4.8629 0.0000 13 1 0.6162 -4.9239 0.8892 14 6 2.2361 -6.0320 -0.0126 15 6 1.4589 -7.3359 0.1722 16 7 0.3507 -7.4074 -0.7717 17 6 -0.1636 -6.3510 -1.4025 18 8 -1.1140 -6.5266 -2.1352 19 6 0.3711 -4.9546 -1.2541 20 1 -0.4850 0.8400 0.0004 21 1 0.3535 -2.3906 0.0002 22 1 2.7643 -6.0530 -0.9659 23 1 2.9509 -5.9137 0.8017 24 1 2.1279 -8.1805 0.0070 25 1 1.0697 -7.3823 1.1893 26 1 -0.0375 -8.2779 -0.9520 27 1 -0.4604 -4.2551 -1.1685 28 1 0.9679 -4.7002 -2.1300 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307699695.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:35 Heat of formation + Delta-G solvation = -114.726166 kcal Electronic energy + Delta-G solvation = -14037.804763 eV Core-core repulsion = 11472.850748 eV Total energy + Delta-G solvation = -2564.954015 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.50289 -39.98172 -37.29510 -35.97970 -34.16324 -33.09138 -30.58020 -27.51632 -25.69933 -23.92510 -21.09279 -20.14352 -19.88888 -18.39917 -17.72020 -17.10390 -16.61709 -16.22143 -15.84547 -15.66904 -15.05708 -14.59958 -14.39008 -14.24156 -13.54249 -12.94454 -12.79260 -12.60457 -12.45891 -12.16539 -11.98532 -11.93518 -11.51372 -11.19878 -10.23972 -10.05242 -10.03392 -8.47484 -5.97011 1.39433 1.42571 1.53373 1.55079 1.99224 2.29378 2.33742 3.08722 3.18408 3.62475 3.76887 3.86071 3.95360 4.29152 4.46744 4.50125 4.68663 4.79334 4.93722 5.10662 5.31087 5.40623 5.86994 5.98075 6.27516 6.55776 7.09947 7.18421 7.53453 8.06827 8.69308 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.051491 B = 0.007659 C = 0.006885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.653948 B = 3655.152813 C = 4066.068419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.083 0.917 9 N -0.568 5.568 10 C 0.443 3.557 11 O -0.629 6.629 12 C -0.091 4.091 13 H 0.110 0.890 14 C -0.110 4.110 15 C 0.115 3.885 16 N -0.704 5.704 17 C 0.529 3.471 18 O -0.603 6.603 19 C -0.122 4.122 20 H 0.278 0.722 21 H 0.396 0.604 22 H 0.064 0.936 23 H 0.092 0.908 24 H 0.114 0.886 25 H 0.091 0.909 26 H 0.409 0.591 27 H 0.098 0.902 28 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.602 -11.834 1.998 12.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.211 4.211 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.101 0.899 9 N -0.203 5.203 10 C 0.230 3.770 11 O -0.517 6.517 12 C -0.112 4.112 13 H 0.128 0.872 14 C -0.149 4.149 15 C -0.008 4.008 16 N -0.355 5.355 17 C 0.317 3.683 18 O -0.486 6.486 19 C -0.162 4.162 20 H 0.088 0.912 21 H 0.230 0.770 22 H 0.083 0.917 23 H 0.110 0.890 24 H 0.132 0.868 25 H 0.109 0.891 26 H 0.246 0.754 27 H 0.117 0.883 28 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.889 -11.541 1.698 11.699 hybrid contribution -0.271 0.825 -0.147 0.881 sum 0.618 -10.716 1.550 10.845 Atomic orbital electron populations 1.69669 1.06943 1.29484 1.49861 1.26062 0.96481 1.02533 0.96064 0.84986 0.77754 0.76570 0.79033 1.19693 1.19704 1.19467 1.19689 0.92851 0.84003 1.50186 0.89939 1.41997 1.09363 1.04859 1.64076 1.20666 0.87972 0.85886 0.82440 1.90491 1.15667 1.88026 1.57498 1.21255 0.97626 0.92968 0.99384 0.87161 1.21645 0.97171 0.91841 1.04212 1.21647 0.87686 0.98295 0.93151 1.45394 1.35810 1.09832 1.44509 1.20014 0.81917 0.87664 0.78739 1.90723 1.30092 1.86523 1.41243 1.21579 1.00921 0.94240 0.99461 0.91234 0.77033 0.91725 0.88992 0.86793 0.89102 0.75398 0.88327 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.46 13.05 21.66 0.28 -49.18 15 2 C -0.01 -0.59 5.50 84.93 0.47 -0.12 15 3 Si 0.99 42.37 29.55 68.60 2.03 44.40 15 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 15 5 H -0.27 -11.04 7.11 99.48 0.71 -10.33 15 6 H -0.27 -11.28 7.11 99.48 0.71 -10.57 15 7 C -0.34 -18.82 9.68 84.04 0.81 -18.01 15 8 H 0.08 4.85 7.16 -2.91 -0.02 4.83 15 9 N -0.57 -28.46 5.20 -306.98 -1.60 -30.06 15 10 C 0.44 20.04 7.08 87.66 0.62 20.66 15 11 O -0.63 -32.94 15.47 -3.08 -0.05 -32.99 15 12 C -0.09 -2.89 2.60 -11.40 -0.03 -2.92 15 13 H 0.11 3.09 8.13 -2.39 -0.02 3.07 15 14 C -0.11 -2.79 4.71 30.68 0.14 -2.65 15 15 C 0.12 1.84 7.17 86.50 0.62 2.46 15 16 N -0.70 -14.56 5.45 -467.22 -2.55 -17.11 15 17 C 0.53 15.79 7.72 87.74 0.68 16.46 15 18 O -0.60 -22.69 17.78 -3.03 -0.05 -22.74 15 19 C -0.12 -3.87 5.21 29.73 0.15 -3.72 15 20 H 0.28 14.08 8.31 -92.71 -0.77 13.31 15 21 H 0.40 19.13 7.63 -92.71 -0.71 18.43 15 22 H 0.06 1.79 8.12 -2.39 -0.02 1.77 15 23 H 0.09 2.40 7.89 -2.39 -0.02 2.38 15 24 H 0.11 1.13 8.14 -2.39 -0.02 1.11 15 25 H 0.09 1.14 8.14 -2.39 -0.02 1.12 15 26 H 0.41 6.86 8.80 -92.71 -0.82 6.05 15 27 H 0.10 3.28 7.94 -2.39 -0.02 3.26 15 28 H 0.09 3.17 8.09 -2.39 -0.02 3.15 15 Total: -1.00 -69.90 245.85 1.21 -68.69 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: -0.33 Total: 26.81 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: 3.47 Total: 12.17 kcal Atomic # 7 Polarization: -92.48 SS G_CDS: -3.86 Total: -96.34 kcal Atomic # 8 Polarization: -55.63 SS G_CDS: -0.10 Total: -55.73 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -69.90 1.21 -68.69 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307699695.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.036 kcal (2) G-P(sol) polarization free energy of solvation -69.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds