Wall clock time and date at job start Sun Mar 29 2020 21:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47267 * 2 1 4 4 C 1.53000 * 109.47499 * 120.00203 * 2 1 3 5 5 C 1.52995 * 109.47255 * 179.97438 * 4 2 1 6 6 H 1.09004 * 109.47168 * 180.02562 * 5 4 2 7 7 N 1.46499 * 109.47087 * 60.00353 * 5 4 2 8 8 C 1.36939 * 119.99983 * 167.03050 * 7 5 4 9 9 H 1.07998 * 120.00203 * 359.97438 * 8 7 5 10 10 C 1.38814 * 119.99813 * 179.97438 * 8 7 5 11 11 N 1.31613 * 120.00062 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99721 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47516 * 59.99845 * 12 10 8 14 14 H 1.48504 * 109.47120 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47025 * 299.99436 * 12 10 8 16 16 C 1.53002 * 109.47318 * 300.00105 * 5 4 2 17 17 C 1.52998 * 109.47200 * 60.00119 * 16 5 4 18 18 C 1.52997 * 109.47258 * 59.99920 * 17 16 5 19 19 C 1.52999 * 109.47317 * 180.02562 * 17 16 5 20 20 C 1.53002 * 109.46950 * 240.00233 * 2 1 3 21 21 H 1.09000 * 109.47267 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46915 * 299.99719 * 1 2 3 23 23 H 1.09004 * 109.47412 * 59.99587 * 1 2 3 24 24 H 1.09000 * 109.47027 * 59.99650 * 4 2 1 25 25 H 1.09000 * 109.47101 * 299.99964 * 4 2 1 26 26 H 0.97000 * 119.99899 * 347.02480 * 7 5 4 27 27 H 0.97001 * 120.00158 * 180.02562 * 11 10 8 28 28 H 1.08996 * 109.47283 * 180.02562 * 16 5 4 29 29 H 1.09000 * 109.46945 * 300.00038 * 16 5 4 30 30 H 1.09000 * 109.47004 * 43.86420 * 18 17 16 31 31 H 1.08993 * 109.47487 * 163.86901 * 18 17 16 32 32 H 1.09001 * 109.47358 * 283.86953 * 18 17 16 33 33 H 1.09000 * 109.47175 * 59.99707 * 19 17 16 34 34 H 1.08995 * 109.47524 * 180.02562 * 19 17 16 35 35 H 1.09006 * 109.46421 * 299.99992 * 19 17 16 36 36 H 1.09004 * 109.46916 * 59.99876 * 20 2 1 37 37 H 1.09000 * 109.46945 * 299.99964 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7218 1.2488 6 1 3.9334 -1.2361 2.1386 7 7 4.0588 0.6592 1.2486 8 6 5.3768 0.9191 1.5144 9 1 6.0558 0.1060 1.7246 10 6 5.8400 2.2277 1.5137 11 7 5.0126 3.2185 1.2571 12 14 7.6377 2.5822 1.8770 13 1 8.4901 1.8993 0.8710 14 1 7.8758 4.0467 1.8147 15 1 7.9763 2.0825 3.2338 16 6 4.0795 -1.4433 -0.0005 17 6 3.5695 -0.7221 -1.2497 18 6 4.0800 0.7203 -1.2500 19 6 4.0784 -1.4439 -2.4990 20 6 2.0399 -0.7212 -1.2493 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.6767 -1.7489 1.2492 25 1 1.6768 -0.2075 2.1392 26 1 3.4489 1.3895 1.0601 27 1 5.3364 4.1329 1.2562 28 1 5.1695 -1.4441 -0.0005 29 1 3.7158 -2.4709 -0.0003 30 1 5.1318 0.7334 -0.9646 31 1 3.9688 1.1449 -2.2476 32 1 3.5029 1.3101 -0.5377 33 1 3.7144 -2.4714 -2.4986 34 1 3.7155 -0.9299 -3.3889 35 1 5.1685 -1.4446 -2.4993 36 1 1.6765 -0.2073 -2.1393 37 1 1.6766 -1.7489 -1.2493 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307707550.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:08 Heat of formation + Delta-G solvation = -18.142931 kcal Electronic energy + Delta-G solvation = -15467.702694 eV Core-core repulsion = 13244.028943 eV Total energy + Delta-G solvation = -2223.673751 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.85774 -35.83408 -34.81608 -33.25833 -30.31264 -27.85821 -27.24384 -27.08952 -25.49981 -22.18399 -20.95089 -19.39329 -18.83764 -16.62168 -16.11404 -16.06669 -15.32880 -14.95438 -14.71546 -14.38797 -13.72617 -13.55023 -13.38312 -13.16233 -12.79903 -12.65774 -12.58141 -12.48589 -12.30825 -12.24060 -12.07153 -11.54876 -11.50779 -11.39110 -11.08030 -10.92039 -10.64498 -10.44653 -8.69658 -7.84647 -5.06734 1.47169 1.48057 1.53689 2.61228 3.48570 3.90207 3.90794 4.01344 4.19111 4.32151 4.44152 4.55174 4.64796 4.76992 4.86731 4.90973 4.93152 5.00010 5.03867 5.06816 5.11333 5.17354 5.24267 5.30621 5.36657 5.44078 5.44913 5.58231 5.64568 5.72654 5.75264 5.83167 6.11765 6.38861 7.45229 8.23716 8.47778 9.38511 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.035062 B = 0.010908 C = 0.009838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.403575 B = 2566.279056 C = 2845.322106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.094 4.094 3 H 0.047 0.953 4 C -0.106 4.106 5 C 0.163 3.837 6 H 0.026 0.974 7 N -0.723 5.723 8 C -0.218 4.218 9 H 0.065 0.935 10 C -0.069 4.069 11 N -0.964 5.964 12 Si 0.955 3.045 13 H -0.285 1.285 14 H -0.299 1.299 15 H -0.283 1.283 16 C -0.112 4.112 17 C -0.055 4.055 18 C -0.117 4.117 19 C -0.133 4.133 20 C -0.089 4.089 21 H 0.068 0.932 22 H 0.049 0.951 23 H 0.056 0.944 24 H 0.085 0.915 25 H 0.049 0.951 26 H 0.377 0.623 27 H 0.246 0.754 28 H 0.032 0.968 29 H 0.070 0.930 30 H 0.027 0.973 31 H 0.013 0.987 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.039 0.961 36 H 0.058 0.942 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.524 -10.024 -4.971 13.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.113 4.113 3 H 0.065 0.935 4 C -0.144 4.144 5 C 0.055 3.945 6 H 0.044 0.956 7 N -0.366 5.366 8 C -0.350 4.350 9 H 0.083 0.917 10 C -0.262 4.262 11 N -0.616 5.616 12 Si 0.786 3.214 13 H -0.212 1.212 14 H -0.225 1.225 15 H -0.210 1.210 16 C -0.152 4.152 17 C -0.055 4.055 18 C -0.174 4.174 19 C -0.191 4.191 20 C -0.127 4.127 21 H 0.087 0.913 22 H 0.068 0.932 23 H 0.075 0.925 24 H 0.103 0.897 25 H 0.068 0.932 26 H 0.214 0.786 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.032 0.968 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.360 -10.057 -4.911 13.395 hybrid contribution 1.280 1.026 0.293 1.666 sum -6.080 -9.031 -4.619 11.826 Atomic orbital electron populations 1.21768 0.93935 1.02329 1.01500 1.21114 0.96018 0.99060 0.95073 0.93496 1.21695 0.94082 1.01160 0.97434 1.20479 0.93474 0.85599 0.94959 0.95617 1.42927 1.07152 1.02791 1.83773 1.19345 0.87533 0.91470 1.36691 0.91742 1.25242 1.00519 0.95843 1.04549 1.69768 1.34922 0.98339 1.58567 0.85482 0.81983 0.76037 0.77921 1.21166 1.22538 1.20987 1.22031 0.99038 0.98302 0.95827 1.20393 0.95563 0.94896 0.94679 1.22024 1.01116 0.96483 0.97815 1.21827 1.00132 1.00378 0.96721 1.21530 0.93665 1.00617 0.96855 0.91300 0.93187 0.92498 0.89673 0.93244 0.78647 0.94472 0.94950 0.91172 0.95425 0.96808 0.91419 0.91374 0.92696 0.94224 0.92336 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 9.19 71.98 0.66 -2.67 16 2 C -0.09 -2.88 2.37 -10.79 -0.03 -2.91 16 3 H 0.05 1.79 5.15 -2.39 -0.01 1.78 16 4 C -0.11 -3.37 4.84 30.59 0.15 -3.22 16 5 C 0.16 6.37 3.14 44.99 0.14 6.51 16 6 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 7 N -0.72 -35.26 2.87 -322.94 -0.93 -36.18 16 8 C -0.22 -11.93 8.16 84.03 0.69 -11.24 16 9 H 0.06 3.49 7.83 -2.91 -0.02 3.46 16 10 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 11 N -0.96 -58.38 13.06 21.65 0.28 -58.10 16 12 Si 0.95 46.91 29.55 68.60 2.03 48.94 16 13 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 14 H -0.30 -14.88 7.11 99.48 0.71 -14.18 16 15 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 16 C -0.11 -3.96 4.35 30.59 0.13 -3.82 16 17 C -0.06 -1.85 0.77 -52.20 -0.04 -1.89 16 18 C -0.12 -4.99 7.05 71.98 0.51 -4.48 16 19 C -0.13 -3.79 8.41 71.98 0.61 -3.18 16 20 C -0.09 -2.53 4.01 30.58 0.12 -2.40 16 21 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 24 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.38 19.77 4.90 -92.71 -0.45 19.31 16 27 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 28 H 0.03 1.29 7.98 -2.39 -0.02 1.27 16 29 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.03 1.35 6.69 -2.39 -0.02 1.33 16 31 H 0.01 0.53 8.04 -2.39 -0.02 0.51 16 32 H 0.07 3.20 3.28 -2.39 -0.01 3.19 16 33 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.05 1.45 8.14 -2.39 -0.02 1.44 16 35 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -60.41 274.46 5.36 -55.06 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.57 Total: 23.08 kcal Atomic # 6 Polarization: -36.20 SS G_CDS: 3.41 Total: -32.79 kcal Atomic # 7 Polarization: -93.64 SS G_CDS: -0.64 Total: -94.28 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -60.41 5.36 -55.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307707550.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.914 kcal (2) G-P(sol) polarization free energy of solvation -60.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds