Wall clock time and date at job start Sun Mar 29 2020 21:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 5 5 C 1.53001 * 109.46886 * 180.02562 * 4 2 1 6 6 H 1.09002 * 109.47508 * 59.99571 * 5 4 2 7 7 N 1.46500 * 109.47299 * 179.97438 * 5 4 2 8 8 C 1.36939 * 119.99792 * 275.00073 * 7 5 4 9 9 H 1.07988 * 119.99983 * 359.97438 * 8 7 5 10 10 C 1.38812 * 119.99527 * 179.97438 * 8 7 5 11 11 N 1.31613 * 120.00547 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99577 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.46656 * 89.99951 * 12 10 8 14 14 H 1.48500 * 109.47155 * 209.99627 * 12 10 8 15 15 H 1.48495 * 109.47170 * 330.00487 * 12 10 8 16 16 C 1.53002 * 109.46963 * 299.99499 * 5 4 2 17 17 C 1.52997 * 109.47092 * 60.00194 * 16 5 4 18 18 C 1.53002 * 109.47415 * 180.02562 * 17 16 5 19 19 C 1.53006 * 109.47164 * 60.00174 * 17 16 5 20 20 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 23 23 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.47194 * 299.99650 * 4 2 1 25 25 H 1.08992 * 109.47399 * 59.99823 * 4 2 1 26 26 H 0.97002 * 119.99914 * 94.98923 * 7 5 4 27 27 H 0.97001 * 120.00212 * 179.97438 * 11 10 8 28 28 H 1.09002 * 109.47067 * 300.00341 * 16 5 4 29 29 H 1.09000 * 109.47312 * 180.02562 * 16 5 4 30 30 H 1.08996 * 109.47407 * 180.02562 * 18 17 16 31 31 H 1.09004 * 109.46733 * 299.99664 * 18 17 16 32 32 H 1.08992 * 109.47063 * 59.99950 * 18 17 16 33 33 H 1.08998 * 109.46505 * 299.99708 * 19 17 16 34 34 H 1.09000 * 109.47050 * 59.99996 * 19 17 16 35 35 H 1.08996 * 109.46884 * 180.02562 * 19 17 16 36 36 H 1.09002 * 109.47075 * 299.99262 * 20 2 1 37 37 H 1.08996 * 109.47407 * 60.00219 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7207 1.2495 6 1 3.9330 0.3071 1.2497 7 7 4.0584 -1.4109 2.4459 8 6 4.1887 -0.7273 3.6253 9 1 3.9318 0.3204 3.6734 10 6 4.6510 -1.3814 4.7591 11 7 4.9636 -2.6586 4.7006 12 14 4.8294 -0.4489 6.3678 13 1 3.5614 -0.5393 7.1356 14 1 5.9336 -1.0421 7.1640 15 1 5.1347 0.9761 6.0827 16 6 4.0804 -1.4417 0.0002 17 6 3.5704 -0.7204 -1.2490 18 6 4.0803 -1.4417 -2.4983 19 6 4.0800 0.7223 -1.2487 20 6 2.0399 -0.7212 -1.2493 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3635 0.5138 -0.8899 24 1 1.6767 -0.2075 2.1392 25 1 1.6766 -1.7489 1.2492 26 1 4.2893 -2.3520 2.4026 27 1 5.2870 -3.1155 5.4928 28 1 3.7174 -2.4695 0.0000 29 1 5.1704 -1.4417 0.0006 30 1 3.7174 -0.9276 -3.3882 31 1 5.1704 -1.4416 -2.4983 32 1 3.7170 -2.4693 -2.4983 33 1 3.7163 1.2358 -0.3588 34 1 5.1700 0.7226 -1.2486 35 1 3.7162 1.2362 -2.1385 36 1 1.6766 -1.7489 -1.2493 37 1 1.6766 -0.2074 -2.1393 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307707551.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:10 Heat of formation + Delta-G solvation = -25.666780 kcal Electronic energy + Delta-G solvation = -14872.453830 eV Core-core repulsion = 12648.453820 eV Total energy + Delta-G solvation = -2224.000010 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.32212 -34.50163 -33.58538 -31.47809 -28.23737 -27.09854 -26.33896 -25.75413 -23.55437 -20.33995 -19.98301 -18.22991 -16.90186 -14.98771 -14.72789 -14.30574 -14.10356 -13.64949 -13.53193 -12.87871 -12.73511 -12.29742 -12.11387 -11.76794 -11.57878 -11.46362 -11.05219 -10.92767 -10.89947 -10.64918 -10.47058 -10.33825 -10.16963 -9.95650 -9.81319 -9.45729 -9.31096 -8.79184 -6.86985 -5.70523 -2.98161 3.46534 3.51571 3.53246 4.63020 4.94911 5.02215 5.09330 5.34994 5.51407 5.58015 5.64035 5.79927 5.80608 5.85190 5.96343 6.02086 6.05803 6.07782 6.11059 6.15414 6.23995 6.29035 6.35573 6.41842 6.43494 6.54526 6.67782 6.75825 6.82488 6.91724 7.12036 7.27427 7.75823 8.48844 9.59349 10.19900 10.54299 11.52464 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.037544 B = 0.008279 C = 0.007515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.607004 B = 3381.318402 C = 3725.176949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.067 0.933 4 C -0.127 4.127 5 C 0.177 3.823 6 H 0.047 0.953 7 N -0.727 5.727 8 C -0.233 4.233 9 H 0.069 0.931 10 C -0.016 4.016 11 N -0.935 5.935 12 Si 0.904 3.096 13 H -0.291 1.291 14 H -0.292 1.292 15 H -0.283 1.283 16 C -0.111 4.111 17 C -0.062 4.062 18 C -0.139 4.139 19 C -0.143 4.143 20 C -0.098 4.098 21 H 0.050 0.950 22 H 0.051 0.949 23 H 0.045 0.955 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.382 0.618 27 H 0.254 0.746 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.046 0.954 36 H 0.058 0.942 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.128 4.399 -13.096 14.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.085 0.915 4 C -0.168 4.168 5 C 0.067 3.933 6 H 0.065 0.935 7 N -0.367 5.367 8 C -0.364 4.364 9 H 0.087 0.913 10 C -0.212 4.212 11 N -0.583 5.583 12 Si 0.736 3.264 13 H -0.218 1.218 14 H -0.218 1.218 15 H -0.208 1.208 16 C -0.149 4.149 17 C -0.063 4.063 18 C -0.196 4.196 19 C -0.200 4.200 20 C -0.135 4.135 21 H 0.069 0.931 22 H 0.070 0.930 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.216 0.784 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.090 4.521 -12.941 14.622 hybrid contribution 0.116 0.086 0.993 1.004 sum -4.974 4.607 -11.948 13.737 Atomic orbital electron populations 1.21820 0.96226 1.01319 1.00803 1.21210 0.94532 0.99818 0.95784 0.91480 1.22295 0.99259 0.99611 0.95624 1.20257 0.91115 0.95612 0.86267 0.93470 1.42460 1.77921 1.10759 1.05531 1.19248 1.35990 0.93787 0.87415 0.91310 1.24725 1.02505 0.95986 0.97990 1.69660 1.51289 1.08682 1.28714 0.86225 0.77255 0.78811 0.84149 1.21832 1.21842 1.20828 1.21844 1.00306 0.99045 0.93755 1.20511 0.95117 0.95563 0.95113 1.21854 1.00821 1.00009 0.96940 1.21961 1.00721 0.95826 1.01493 1.21615 0.94450 1.00296 0.97152 0.93073 0.92978 0.93545 0.92411 0.92927 0.78440 0.93635 0.92504 0.92178 0.93245 0.92863 0.92935 0.91721 0.92969 0.93515 0.92352 0.92899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.19 37.16 0.34 -1.52 16 2 C -0.09 -1.38 2.45 -90.62 -0.22 -1.60 16 3 H 0.07 0.98 6.43 -51.93 -0.33 0.64 16 4 C -0.13 -2.36 4.78 -26.73 -0.13 -2.49 16 5 C 0.18 3.60 2.50 -67.93 -0.17 3.43 16 6 H 0.05 0.99 6.37 -51.93 -0.33 0.66 16 7 N -0.73 -18.69 5.12 -53.43 -0.27 -18.96 16 8 C -0.23 -6.60 9.93 -15.06 -0.15 -6.75 16 9 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 10 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 11 N -0.93 -28.75 13.06 55.49 0.72 -28.02 16 12 Si 0.90 22.79 29.55 -169.99 -5.02 17.76 16 13 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 14 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 15 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 16 C -0.11 -1.93 4.20 -26.73 -0.11 -2.04 16 17 C -0.06 -0.87 0.77 -154.48 -0.12 -0.99 16 18 C -0.14 -1.68 8.47 37.16 0.31 -1.36 16 19 C -0.14 -1.91 7.78 37.16 0.29 -1.62 16 20 C -0.10 -1.31 4.02 -26.70 -0.11 -1.41 16 21 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.38 10.47 7.80 -40.82 -0.32 10.15 16 27 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.93 4.81 -51.93 -0.25 0.68 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 284.16 15.07 4.28 4.28 Total: -1.00 -29.66 284.16 -7.14 -36.80 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -6.70 Total: 5.07 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: -0.16 Total: -16.93 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: 0.45 Total: -46.99 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.66 -7.14 -36.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307707551.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.135 kcal (2) G-P(sol) polarization free energy of solvation -29.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds