Wall clock time and date at job start Sun Mar 29 2020 21:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 5 5 C 1.53001 * 109.46886 * 180.02562 * 4 2 1 6 6 H 1.09002 * 109.47508 * 59.99571 * 5 4 2 7 7 N 1.46500 * 109.47299 * 179.97438 * 5 4 2 8 8 C 1.36939 * 119.99792 * 275.00073 * 7 5 4 9 9 H 1.07988 * 119.99983 * 359.97438 * 8 7 5 10 10 C 1.38812 * 119.99527 * 179.97438 * 8 7 5 11 11 N 1.31613 * 120.00547 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99577 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.46656 * 89.99951 * 12 10 8 14 14 H 1.48500 * 109.47155 * 209.99627 * 12 10 8 15 15 H 1.48495 * 109.47170 * 330.00487 * 12 10 8 16 16 C 1.53002 * 109.46963 * 299.99499 * 5 4 2 17 17 C 1.52997 * 109.47092 * 60.00194 * 16 5 4 18 18 C 1.53002 * 109.47415 * 180.02562 * 17 16 5 19 19 C 1.53006 * 109.47164 * 60.00174 * 17 16 5 20 20 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 23 23 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.47194 * 299.99650 * 4 2 1 25 25 H 1.08992 * 109.47399 * 59.99823 * 4 2 1 26 26 H 0.97002 * 119.99914 * 94.98923 * 7 5 4 27 27 H 0.97001 * 120.00212 * 179.97438 * 11 10 8 28 28 H 1.09002 * 109.47067 * 300.00341 * 16 5 4 29 29 H 1.09000 * 109.47312 * 180.02562 * 16 5 4 30 30 H 1.08996 * 109.47407 * 180.02562 * 18 17 16 31 31 H 1.09004 * 109.46733 * 299.99664 * 18 17 16 32 32 H 1.08992 * 109.47063 * 59.99950 * 18 17 16 33 33 H 1.08998 * 109.46505 * 299.99708 * 19 17 16 34 34 H 1.09000 * 109.47050 * 59.99996 * 19 17 16 35 35 H 1.08996 * 109.46884 * 180.02562 * 19 17 16 36 36 H 1.09002 * 109.47075 * 299.99262 * 20 2 1 37 37 H 1.08996 * 109.47407 * 60.00219 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7207 1.2495 6 1 3.9330 0.3071 1.2497 7 7 4.0584 -1.4109 2.4459 8 6 4.1887 -0.7273 3.6253 9 1 3.9318 0.3204 3.6734 10 6 4.6510 -1.3814 4.7591 11 7 4.9636 -2.6586 4.7006 12 14 4.8294 -0.4489 6.3678 13 1 3.5614 -0.5393 7.1356 14 1 5.9336 -1.0421 7.1640 15 1 5.1347 0.9761 6.0827 16 6 4.0804 -1.4417 0.0002 17 6 3.5704 -0.7204 -1.2490 18 6 4.0803 -1.4417 -2.4983 19 6 4.0800 0.7223 -1.2487 20 6 2.0399 -0.7212 -1.2493 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3635 0.5138 -0.8899 24 1 1.6767 -0.2075 2.1392 25 1 1.6766 -1.7489 1.2492 26 1 4.2893 -2.3520 2.4026 27 1 5.2870 -3.1155 5.4928 28 1 3.7174 -2.4695 0.0000 29 1 5.1704 -1.4417 0.0006 30 1 3.7174 -0.9276 -3.3882 31 1 5.1704 -1.4416 -2.4983 32 1 3.7170 -2.4693 -2.4983 33 1 3.7163 1.2358 -0.3588 34 1 5.1700 0.7226 -1.2486 35 1 3.7162 1.2362 -2.1385 36 1 1.6766 -1.7489 -1.2493 37 1 1.6766 -0.2074 -2.1393 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307707551.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:09 Heat of formation + Delta-G solvation = -42.793913 kcal Electronic energy + Delta-G solvation = -14873.196518 eV Core-core repulsion = 12648.453820 eV Total energy + Delta-G solvation = -2224.742698 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.63119 -36.34382 -34.80647 -33.42926 -30.05003 -28.15395 -27.39951 -27.08016 -25.63591 -21.89623 -21.25450 -19.74197 -18.76390 -16.76696 -15.96078 -15.94313 -15.57251 -15.12234 -14.90799 -14.61000 -14.12073 -13.41607 -13.36471 -13.04592 -12.92599 -12.75606 -12.64410 -12.59070 -12.28428 -12.19762 -12.08065 -11.91791 -11.68714 -11.58492 -11.16266 -11.03348 -10.75730 -10.69117 -8.98074 -7.93952 -5.21899 1.44884 1.46927 1.55280 2.55612 3.38614 3.71145 3.79030 3.92105 4.18952 4.29752 4.34159 4.46761 4.55285 4.64597 4.75422 4.80860 4.83134 4.89209 4.96661 4.99439 5.06558 5.10993 5.19462 5.22550 5.25925 5.32682 5.41461 5.45570 5.49709 5.58032 5.62823 5.64032 5.78557 6.29185 7.33728 8.12438 8.35228 9.29892 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.037544 B = 0.008279 C = 0.007515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.607004 B = 3381.318402 C = 3725.176949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 H 0.071 0.929 4 C -0.118 4.118 5 C 0.172 3.828 6 H 0.041 0.959 7 N -0.741 5.741 8 C -0.235 4.235 9 H 0.072 0.928 10 C -0.080 4.080 11 N -0.972 5.972 12 Si 0.971 3.029 13 H -0.288 1.288 14 H -0.295 1.295 15 H -0.270 1.270 16 C -0.103 4.103 17 C -0.059 4.059 18 C -0.135 4.135 19 C -0.142 4.142 20 C -0.094 4.094 21 H 0.049 0.951 22 H 0.046 0.954 23 H 0.072 0.928 24 H 0.032 0.968 25 H 0.039 0.961 26 H 0.370 0.630 27 H 0.250 0.750 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.990 5.730 -14.816 16.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.108 4.108 3 H 0.089 0.911 4 C -0.158 4.158 5 C 0.064 3.936 6 H 0.059 0.941 7 N -0.380 5.380 8 C -0.367 4.367 9 H 0.090 0.910 10 C -0.271 4.271 11 N -0.623 5.623 12 Si 0.800 3.200 13 H -0.215 1.215 14 H -0.221 1.221 15 H -0.194 1.194 16 C -0.142 4.142 17 C -0.060 4.060 18 C -0.192 4.192 19 C -0.199 4.199 20 C -0.131 4.131 21 H 0.069 0.931 22 H 0.065 0.935 23 H 0.091 0.909 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.201 0.799 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.974 5.889 -14.699 16.924 hybrid contribution 0.377 -0.314 1.483 1.562 sum -5.597 5.575 -13.215 15.396 Atomic orbital electron populations 1.21786 0.94546 1.01649 1.01868 1.21161 0.95914 0.99493 0.94191 0.91057 1.22114 0.97533 0.99135 0.97042 1.20498 0.92302 0.95050 0.85726 0.94130 1.42711 1.78364 1.10328 1.06639 1.19602 1.34627 0.94026 0.88471 0.91006 1.25552 1.03189 0.96950 1.01444 1.69822 1.52882 1.10251 1.29317 0.85170 0.76914 0.78060 0.79850 1.21497 1.22112 1.19448 1.21759 0.99390 0.98770 0.94257 1.20508 0.95734 0.95722 0.93998 1.21814 1.00783 1.00088 0.96558 1.21945 1.00529 0.95355 1.02041 1.21607 0.93665 1.00429 0.97384 0.93144 0.93497 0.90934 0.94913 0.94218 0.79914 0.94124 0.93276 0.93552 0.90903 0.93023 0.92842 0.93179 0.93391 0.90879 0.92497 0.89955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 9.19 71.98 0.66 -2.63 16 2 C -0.09 -2.42 2.45 -10.79 -0.03 -2.45 16 3 H 0.07 1.92 6.43 -2.39 -0.02 1.90 16 4 C -0.12 -4.40 4.78 30.59 0.15 -4.25 16 5 C 0.17 7.11 2.50 44.99 0.11 7.22 16 6 H 0.04 1.73 6.37 -2.39 -0.02 1.72 16 7 N -0.74 -39.30 5.12 -322.94 -1.65 -40.95 16 8 C -0.24 -13.57 9.93 84.03 0.83 -12.74 16 9 H 0.07 4.01 7.83 -2.92 -0.02 3.98 16 10 C -0.08 -4.71 5.50 84.86 0.47 -4.25 16 11 N -0.97 -61.26 13.06 21.65 0.28 -60.98 16 12 Si 0.97 47.44 29.55 68.60 2.03 49.47 16 13 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 14 H -0.29 -14.41 7.11 99.48 0.71 -13.71 16 15 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 16 C -0.10 -3.58 4.20 30.59 0.13 -3.45 16 17 C -0.06 -1.52 0.77 -52.16 -0.04 -1.56 16 18 C -0.14 -2.87 8.47 71.98 0.61 -2.26 16 19 C -0.14 -3.45 7.78 71.98 0.56 -2.89 16 20 C -0.09 -2.21 4.02 30.61 0.12 -2.09 16 21 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.37 21.07 7.80 -92.71 -0.72 20.35 16 27 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 28 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.05 1.36 4.81 -2.39 -0.01 1.35 16 34 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -64.36 284.16 4.52 -59.84 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 0.29 Total: 23.97 kcal Atomic # 6 Polarization: -34.92 SS G_CDS: 3.58 Total: -31.34 kcal Atomic # 7 Polarization: -100.56 SS G_CDS: -1.37 Total: -101.94 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -64.36 4.52 -59.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307707551.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.042 kcal (2) G-P(sol) polarization free energy of solvation -64.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds