Wall clock time and date at job start Sun Mar 29 2020 21:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.47119 * 2 1 4 4 C 1.52997 * 109.46890 * 239.99577 * 2 1 3 5 5 C 1.52999 * 109.47188 * 180.02562 * 4 2 1 6 6 H 1.08999 * 109.47091 * 300.00470 * 5 4 2 7 7 N 1.46499 * 109.47341 * 180.02562 * 5 4 2 8 8 C 1.36939 * 119.99933 * 85.27615 * 7 5 4 9 9 H 1.08001 * 119.99700 * 359.72658 * 8 7 5 10 10 C 1.38810 * 120.00095 * 179.71972 * 8 7 5 11 11 N 1.31612 * 120.00054 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99751 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47517 * 89.99708 * 12 10 8 14 14 H 1.48502 * 109.46736 * 209.99481 * 12 10 8 15 15 H 1.48496 * 109.47375 * 329.99177 * 12 10 8 16 16 C 1.53001 * 109.46944 * 60.00112 * 5 4 2 17 17 C 1.53005 * 109.47258 * 300.00039 * 16 5 4 18 18 C 1.53000 * 109.46735 * 179.97438 * 17 16 5 19 19 C 1.53002 * 109.47131 * 300.00119 * 17 16 5 20 20 C 1.53003 * 109.46492 * 120.00426 * 2 1 3 21 21 H 1.08996 * 109.46799 * 300.00324 * 1 2 3 22 22 H 1.09001 * 109.46669 * 60.00015 * 1 2 3 23 23 H 1.08999 * 109.47543 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47132 * 60.00691 * 4 2 1 25 25 H 1.08999 * 109.47488 * 300.00597 * 4 2 1 26 26 H 0.97001 * 119.99790 * 264.99588 * 7 5 4 27 27 H 0.96998 * 120.00381 * 180.02562 * 11 10 8 28 28 H 1.08999 * 109.46935 * 60.00262 * 16 5 4 29 29 H 1.09004 * 109.47138 * 180.02562 * 16 5 4 30 30 H 1.08990 * 109.47479 * 60.00871 * 18 17 16 31 31 H 1.09005 * 109.46703 * 180.02562 * 18 17 16 32 32 H 1.09000 * 109.47623 * 299.99711 * 18 17 16 33 33 H 1.08994 * 109.47292 * 60.00090 * 19 17 16 34 34 H 1.09000 * 109.46363 * 179.97438 * 19 17 16 35 35 H 1.08995 * 109.47013 * 299.99910 * 19 17 16 36 36 H 1.08999 * 109.47459 * 59.99664 * 20 2 1 37 37 H 1.09005 * 109.47227 * 299.99261 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 1 3.9337 0.3056 -1.2487 7 7 4.0583 -1.4121 -2.4453 8 6 4.1949 -0.7270 -3.6232 9 1 3.9385 0.3210 -3.6711 10 6 4.6631 -1.3795 -4.7553 11 7 4.7940 -0.7212 -5.8875 12 14 5.1061 -3.1923 -4.6724 13 1 3.9102 -4.0097 -4.9993 14 1 6.1863 -3.4830 -5.6491 15 1 5.5741 -3.5254 -3.3031 16 6 4.0794 -1.4435 0.0004 17 6 3.5695 -0.7222 1.2496 18 6 4.0785 -1.4442 2.4988 19 6 4.0800 0.7201 1.2499 20 6 2.0399 -0.7214 1.2493 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.6767 -0.2075 -2.1392 25 1 1.6766 -1.7490 -1.2492 26 1 4.2887 -2.3534 -2.4022 27 1 5.1208 -1.1772 -6.6787 28 1 3.7157 -2.4710 0.0001 29 1 5.1695 -1.4436 0.0008 30 1 5.1684 -1.4450 2.4993 31 1 3.7148 -0.9306 3.3888 32 1 3.7144 -2.4716 2.4985 33 1 3.7171 1.2342 0.3600 34 1 3.7163 1.2340 2.1397 35 1 5.1700 0.7197 1.2501 36 1 1.6765 -1.7490 1.2492 37 1 1.6766 -0.2075 2.1393 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307707552.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:11 Heat of formation + Delta-G solvation = -40.070918 kcal Electronic energy + Delta-G solvation = -14921.281261 eV Core-core repulsion = 12696.656641 eV Total energy + Delta-G solvation = -2224.624620 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.67857 -36.49646 -34.81854 -33.65507 -30.56492 -28.16324 -27.40815 -27.09896 -25.31688 -21.96305 -21.26874 -20.06786 -18.97430 -16.71886 -16.20889 -15.93480 -15.38033 -15.32516 -14.92115 -14.60863 -14.26941 -13.60941 -13.42818 -13.19124 -13.03453 -12.76541 -12.65198 -12.58679 -12.32221 -12.22248 -12.10987 -11.84162 -11.68200 -11.59467 -11.18383 -11.09234 -10.80197 -10.71170 -9.28443 -8.02739 -5.35095 1.35615 1.39114 1.46637 2.47669 3.28346 3.50197 3.77552 3.89943 4.11758 4.21897 4.30102 4.44768 4.52136 4.60975 4.72563 4.79693 4.82379 4.87974 4.95080 4.98380 5.06056 5.09470 5.18782 5.20699 5.25306 5.32408 5.37952 5.47817 5.50528 5.61005 5.61852 5.75689 5.78966 6.22320 7.08335 7.86185 8.05363 9.19255 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034917 B = 0.009064 C = 0.008182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.714841 B = 3088.556310 C = 3421.369225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 H 0.066 0.934 4 C -0.120 4.120 5 C 0.174 3.826 6 H 0.039 0.961 7 N -0.755 5.755 8 C -0.225 4.225 9 H 0.053 0.947 10 C -0.068 4.068 11 N -0.986 5.986 12 Si 0.956 3.044 13 H -0.279 1.279 14 H -0.295 1.295 15 H -0.253 1.253 16 C -0.108 4.108 17 C -0.059 4.059 18 C -0.135 4.135 19 C -0.144 4.144 20 C -0.093 4.093 21 H 0.071 0.929 22 H 0.043 0.957 23 H 0.054 0.946 24 H 0.028 0.972 25 H 0.050 0.950 26 H 0.363 0.637 27 H 0.257 0.743 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.048 0.952 36 H 0.062 0.938 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.337 -1.640 19.184 19.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 H 0.084 0.916 4 C -0.160 4.160 5 C 0.066 3.934 6 H 0.057 0.943 7 N -0.398 5.398 8 C -0.356 4.356 9 H 0.071 0.929 10 C -0.259 4.259 11 N -0.637 5.637 12 Si 0.783 3.217 13 H -0.206 1.206 14 H -0.222 1.222 15 H -0.177 1.177 16 C -0.146 4.146 17 C -0.059 4.059 18 C -0.192 4.192 19 C -0.201 4.201 20 C -0.131 4.131 21 H 0.090 0.910 22 H 0.062 0.938 23 H 0.073 0.927 24 H 0.047 0.953 25 H 0.069 0.931 26 H 0.196 0.804 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.331 -1.461 19.051 19.836 hybrid contribution 0.436 -0.821 -1.069 1.417 sum -4.895 -2.282 17.981 18.775 Atomic orbital electron populations 1.21787 0.94534 1.01829 1.01721 1.21156 0.95950 0.99414 0.94349 0.91557 1.22097 0.97186 0.99705 0.96986 1.20488 0.92486 0.95206 0.85182 0.94263 1.42877 1.79864 1.09575 1.07473 1.19022 1.34727 0.94280 0.87594 0.92938 1.25507 1.02520 1.02692 0.95170 1.69886 1.54837 1.37725 1.01288 0.85386 0.77664 0.80615 0.77994 1.20568 1.22187 1.17713 1.21821 0.99874 0.99157 0.93733 1.20486 0.95732 0.95529 0.94203 1.21808 1.00843 1.00187 0.96342 1.21963 1.00601 0.95664 1.01872 1.21596 0.93677 1.00656 0.97136 0.91038 0.93815 0.92710 0.95291 0.93101 0.80403 0.93424 0.92116 0.92871 0.92900 0.91146 0.92444 0.93507 0.91049 0.93282 0.91889 0.90134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.19 71.98 0.66 -2.56 16 2 C -0.09 -2.38 2.45 -10.79 -0.03 -2.40 16 3 H 0.07 1.81 6.43 -2.39 -0.02 1.80 16 4 C -0.12 -4.26 4.79 30.59 0.15 -4.12 16 5 C 0.17 6.81 2.50 44.99 0.11 6.92 16 6 H 0.04 1.67 6.36 -2.39 -0.02 1.65 16 7 N -0.76 -36.74 4.92 -322.94 -1.59 -38.33 16 8 C -0.23 -13.29 10.41 84.03 0.87 -12.42 16 9 H 0.05 3.41 8.06 -2.91 -0.02 3.39 16 10 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 11 N -0.99 -64.91 13.97 21.65 0.30 -64.61 16 12 Si 0.96 46.91 27.74 68.60 1.90 48.81 16 13 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 14 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 15 H -0.25 -11.22 6.52 99.48 0.65 -10.57 16 16 C -0.11 -3.33 4.20 30.60 0.13 -3.20 16 17 C -0.06 -1.39 0.77 -52.19 -0.04 -1.43 16 18 C -0.13 -2.53 8.47 71.98 0.61 -1.92 16 19 C -0.14 -3.41 7.78 71.98 0.56 -2.85 16 20 C -0.09 -2.04 4.01 30.58 0.12 -1.92 16 21 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 22 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.36 16.95 5.66 -92.71 -0.52 16.42 16 27 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 28 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.05 1.71 8.14 -2.38 -0.02 1.70 16 30 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.05 1.28 4.81 -2.39 -0.01 1.27 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 Total: -1.00 -67.37 281.04 4.66 -62.70 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 0.43 Total: 20.97 kcal Atomic # 6 Polarization: -33.16 SS G_CDS: 3.62 Total: -29.55 kcal Atomic # 7 Polarization: -101.65 SS G_CDS: -1.29 Total: -102.94 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 1.90 Total: 48.81 kcal Total: -67.37 4.66 -62.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307707552.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.634 kcal (2) G-P(sol) polarization free energy of solvation -67.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds