Wall clock time and date at job start Sun Mar 29 2020 21:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99304 * 2 1 4 4 H 1.48500 * 109.46986 * 239.99464 * 3 2 1 5 5 H 1.48496 * 109.47475 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47299 * 119.99949 * 3 2 1 7 7 C 1.37868 * 120.00421 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 180.02562 * 7 2 1 9 9 C 1.50709 * 120.00011 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.46987 * 179.97438 * 9 7 2 11 11 C 1.39173 * 119.99900 * 180.02562 * 10 9 7 12 12 C 1.39529 * 120.85844 * 359.97438 * 11 10 9 13 13 C 1.37838 * 119.10144 * 180.02562 * 12 11 10 14 14 N 1.32030 * 120.86124 * 0.02562 * 13 12 11 15 15 C 1.32081 * 121.89017 * 359.69223 * 14 13 12 16 16 Cl 1.73598 * 119.59870 * 180.28623 * 15 14 13 17 17 C 1.38085 * 120.80600 * 0.57964 * 15 14 13 18 18 H 0.96993 * 120.00697 * 0.02562 * 1 2 3 19 19 H 1.08998 * 109.46660 * 59.99595 * 9 7 2 20 20 H 1.08990 * 109.47029 * 299.99677 * 9 7 2 21 21 H 0.97007 * 120.00571 * 359.97438 * 10 9 7 22 22 H 1.07997 * 120.45061 * 359.97438 * 12 11 10 23 23 H 1.07996 * 119.57528 * 179.97438 * 13 12 11 24 24 H 1.08002 * 120.47450 * 179.73596 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6967 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 7 2.2032 -3.6125 0.0005 11 6 1.7394 -4.9247 0.0000 12 6 0.3716 -5.2003 0.0000 13 6 -0.0476 -6.5134 0.0000 14 7 0.8260 -7.5033 0.0005 15 6 2.1285 -7.2844 -0.0050 16 17 3.2242 -8.6309 -0.0115 17 6 2.6294 -5.9976 0.0005 18 1 -0.4851 0.8399 -0.0004 19 1 0.6249 -2.5570 -0.8897 20 1 0.6243 -2.5568 0.8902 21 1 3.1570 -3.4353 0.0002 22 1 -0.3488 -4.3957 0.0008 23 1 -1.1045 -6.7354 0.0004 24 1 3.6955 -5.8248 0.0002 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307727241.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:09 Heat of formation + Delta-G solvation = 16.450413 kcal Electronic energy + Delta-G solvation = -11210.838300 eV Core-core repulsion = 8956.448599 eV Total energy + Delta-G solvation = -2254.389701 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.041 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.72387 -36.49798 -35.67081 -32.96213 -30.70316 -30.12016 -26.85088 -23.63861 -22.81786 -21.29411 -17.84130 -16.51548 -16.05195 -15.29430 -14.78991 -14.35465 -14.20746 -13.43519 -13.36559 -12.98415 -12.26368 -11.45622 -11.26878 -11.12441 -11.05569 -11.00443 -10.35221 -10.22817 -9.58582 -9.21658 -8.74704 -8.63233 -7.17350 -6.33704 -4.40518 1.40492 1.91543 2.11007 3.16876 3.22219 3.23535 4.05748 4.16543 4.30225 4.91295 5.03901 5.41422 5.48995 5.63678 5.91277 6.15606 6.46509 6.76733 6.98974 7.20466 7.44484 7.75755 7.94728 8.23910 8.36705 8.68809 9.26626 10.76629 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.069648 B = 0.006019 C = 0.005557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.923887 B = 4650.891688 C = 5037.667768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.066 3.934 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.063 0.937 9 C 0.247 3.753 10 N -0.707 5.707 11 C 0.273 3.727 12 C -0.251 4.251 13 C 0.151 3.849 14 N -0.542 5.542 15 C 0.215 3.785 16 Cl -0.055 7.055 17 C -0.252 4.252 18 H 0.268 0.732 19 H 0.026 0.974 20 H 0.027 0.973 21 H 0.397 0.603 22 H 0.141 0.859 23 H 0.157 0.843 24 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.053 -9.331 -0.014 9.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.138 4.138 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.126 3.874 10 N -0.328 5.328 11 C 0.153 3.847 12 C -0.277 4.277 13 C -0.003 4.003 14 N -0.259 5.259 15 C 0.052 3.948 16 Cl -0.027 7.027 17 C -0.280 4.280 18 H 0.078 0.922 19 H 0.044 0.956 20 H 0.044 0.956 21 H 0.231 0.769 22 H 0.159 0.841 23 H 0.174 0.826 24 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.521 -9.931 -0.010 10.246 hybrid contribution 1.159 1.771 -0.002 2.117 sum 3.681 -8.160 -0.012 8.952 Atomic orbital electron populations 1.69918 1.06108 1.27759 1.48648 1.24925 0.94977 0.99565 0.94365 0.86422 0.79436 0.81981 0.78838 1.19979 1.20927 1.19974 1.21110 0.93398 0.90206 1.53664 0.91845 1.19274 0.88582 0.82394 0.97161 1.45590 1.10386 1.02199 1.74602 1.18113 0.92560 0.85906 0.88107 1.21774 0.94898 0.98814 1.12188 1.22209 0.98290 0.87212 0.92600 1.66947 1.01209 1.37058 1.20671 1.21057 0.89417 0.86392 0.97960 1.98357 1.60451 1.47218 1.96657 1.21058 1.00481 0.90399 1.16080 0.92199 0.95571 0.95561 0.76867 0.84074 0.82570 0.84842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.43 13.29 55.43 0.74 -23.69 14 2 C 0.07 1.73 5.46 -17.82 -0.10 1.63 14 3 Si 0.91 20.07 29.54 -169.99 -5.02 15.05 14 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 14 5 H -0.28 -6.25 7.11 56.52 0.40 -5.84 14 6 H -0.27 -6.00 7.11 56.52 0.40 -5.60 14 7 C -0.55 -14.02 9.28 -34.44 -0.32 -14.33 14 8 H 0.06 1.56 7.60 -52.49 -0.40 1.16 14 9 C 0.25 5.83 4.70 -5.19 -0.02 5.81 14 10 N -0.71 -13.89 5.71 -59.65 -0.34 -14.23 14 11 C 0.27 4.97 6.69 -83.61 -0.56 4.41 14 12 C -0.25 -4.37 9.38 -39.25 -0.37 -4.74 14 13 C 0.15 2.39 11.17 -17.61 -0.20 2.19 14 14 N -0.54 -9.30 10.34 -10.46 -0.11 -9.41 14 15 C 0.22 3.57 7.27 -17.50 -0.13 3.45 14 16 Cl -0.06 -0.79 29.10 -51.86 -1.51 -2.30 14 17 C -0.25 -4.16 9.76 -39.21 -0.38 -4.54 14 18 H 0.27 6.99 8.31 -40.82 -0.34 6.65 14 19 H 0.03 0.67 7.99 -51.93 -0.42 0.25 14 20 H 0.03 0.67 7.99 -51.93 -0.42 0.25 14 21 H 0.40 7.18 8.35 -40.82 -0.34 6.84 14 22 H 0.14 2.50 6.89 -52.49 -0.36 2.14 14 23 H 0.16 1.94 8.06 -52.49 -0.42 1.52 14 24 H 0.13 1.93 8.06 -52.49 -0.42 1.51 14 LS Contribution 236.26 15.07 3.56 3.56 Total: -1.00 -27.19 236.26 -6.67 -33.86 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -1.91 Total: 3.27 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -2.08 Total: -6.12 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: 0.29 Total: -47.33 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.51 Total: -2.30 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -27.19 -6.67 -33.86 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307727241.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.315 kcal (2) G-P(sol) polarization free energy of solvation -27.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds