Wall clock time and date at job start Sun Mar 29 2020 21:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99304 * 2 1 4 4 H 1.48500 * 109.46986 * 239.99464 * 3 2 1 5 5 H 1.48496 * 109.47475 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47299 * 119.99949 * 3 2 1 7 7 C 1.37868 * 120.00421 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 180.02562 * 7 2 1 9 9 C 1.50709 * 120.00011 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.46987 * 179.97438 * 9 7 2 11 11 C 1.39173 * 119.99900 * 180.02562 * 10 9 7 12 12 C 1.39529 * 120.85844 * 359.97438 * 11 10 9 13 13 C 1.37838 * 119.10144 * 180.02562 * 12 11 10 14 14 N 1.32030 * 120.86124 * 0.02562 * 13 12 11 15 15 C 1.32081 * 121.89017 * 359.69223 * 14 13 12 16 16 Cl 1.73598 * 119.59870 * 180.28623 * 15 14 13 17 17 C 1.38085 * 120.80600 * 0.57964 * 15 14 13 18 18 H 0.96993 * 120.00697 * 0.02562 * 1 2 3 19 19 H 1.08998 * 109.46660 * 59.99595 * 9 7 2 20 20 H 1.08990 * 109.47029 * 299.99677 * 9 7 2 21 21 H 0.97007 * 120.00571 * 359.97438 * 10 9 7 22 22 H 1.07997 * 120.45061 * 359.97438 * 12 11 10 23 23 H 1.07996 * 119.57528 * 179.97438 * 13 12 11 24 24 H 1.08002 * 120.47450 * 179.73596 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6967 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 7 2.2032 -3.6125 0.0005 11 6 1.7394 -4.9247 0.0000 12 6 0.3716 -5.2003 0.0000 13 6 -0.0476 -6.5134 0.0000 14 7 0.8260 -7.5033 0.0005 15 6 2.1285 -7.2844 -0.0050 16 17 3.2242 -8.6309 -0.0115 17 6 2.6294 -5.9976 0.0005 18 1 -0.4851 0.8399 -0.0004 19 1 0.6249 -2.5570 -0.8897 20 1 0.6243 -2.5568 0.8902 21 1 3.1570 -3.4353 0.0002 22 1 -0.3488 -4.3957 0.0008 23 1 -1.1045 -6.7354 0.0004 24 1 3.6955 -5.8248 0.0002 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307727241.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:09 Heat of formation + Delta-G solvation = -0.701099 kcal Electronic energy + Delta-G solvation = -11211.582045 eV Core-core repulsion = 8956.448599 eV Total energy + Delta-G solvation = -2255.133446 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.041 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.08218 -37.81417 -37.15624 -34.85125 -32.11725 -31.61437 -28.64253 -25.28055 -24.27666 -22.83583 -19.45876 -18.09523 -17.65080 -16.71787 -16.48213 -15.80270 -15.62635 -15.02022 -14.68191 -14.67334 -14.12286 -12.91691 -12.89679 -12.63817 -12.62969 -12.26634 -12.16532 -11.77864 -11.50331 -10.68826 -10.56169 -9.94605 -8.71315 -8.32637 -6.46438 0.08286 0.53050 0.84289 1.42863 1.44368 1.52729 2.31795 2.66410 2.82517 3.03618 3.69358 4.05768 4.16661 4.23873 4.64066 4.79285 4.98146 5.13766 5.24239 5.43601 5.60503 5.83492 6.27233 6.61872 6.91021 6.94675 7.26003 8.78406 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.069648 B = 0.006019 C = 0.005557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.923887 B = 4650.891688 C = 5037.667768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.013 3.987 3 Si 0.975 3.025 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.562 4.562 8 H 0.073 0.927 9 C 0.266 3.734 10 N -0.711 5.711 11 C 0.256 3.744 12 C -0.264 4.264 13 C 0.159 3.841 14 N -0.551 5.551 15 C 0.205 3.795 16 Cl -0.032 7.032 17 C -0.244 4.244 18 H 0.270 0.730 19 H 0.002 0.998 20 H 0.003 0.997 21 H 0.404 0.596 22 H 0.131 0.869 23 H 0.191 0.809 24 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.053 -9.795 -0.014 10.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.188 4.188 3 Si 0.799 3.201 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.600 4.600 8 H 0.091 0.909 9 C 0.144 3.856 10 N -0.335 5.335 11 C 0.138 3.862 12 C -0.290 4.290 13 C 0.005 3.995 14 N -0.267 5.267 15 C 0.042 3.958 16 Cl -0.004 7.004 17 C -0.272 4.272 18 H 0.079 0.921 19 H 0.020 0.980 20 H 0.020 0.980 21 H 0.240 0.760 22 H 0.149 0.851 23 H 0.208 0.792 24 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.546 -10.445 -0.011 11.031 hybrid contribution 0.839 1.755 -0.002 1.946 sum 4.385 -8.690 -0.012 9.733 Atomic orbital electron populations 1.70040 1.07690 1.28669 1.49720 1.25849 0.95791 1.03240 0.93900 0.85344 0.78112 0.77465 0.79173 1.19186 1.20779 1.19177 1.21531 0.94094 0.91143 1.53189 0.90937 1.18752 0.88608 0.83380 0.94864 1.45211 1.09994 1.01942 1.76312 1.18329 0.93317 0.85629 0.88888 1.21872 0.94685 0.99500 1.12897 1.22688 0.99743 0.86181 0.90889 1.67078 1.01636 1.37400 1.20606 1.21320 0.89709 0.87237 0.97506 1.98364 1.59593 1.45957 1.96490 1.21207 1.01274 0.89829 1.14857 0.92117 0.97974 0.97964 0.76011 0.85077 0.79240 0.82841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.57 13.29 21.44 0.28 -51.29 14 2 C 0.01 0.67 5.46 84.65 0.46 1.13 14 3 Si 0.98 40.81 29.54 68.60 2.03 42.84 14 4 H -0.27 -10.78 7.11 99.48 0.71 -10.07 14 5 H -0.28 -11.66 7.11 99.48 0.71 -10.95 14 6 H -0.27 -10.78 7.11 99.48 0.71 -10.07 14 7 C -0.56 -28.97 9.28 25.60 0.24 -28.73 14 8 H 0.07 3.51 7.60 -2.91 -0.02 3.49 14 9 C 0.27 12.91 4.70 85.64 0.40 13.32 14 10 N -0.71 -28.00 5.71 -342.63 -1.96 -29.96 14 11 C 0.26 9.20 6.69 38.57 0.26 9.46 14 12 C -0.26 -9.13 9.38 22.49 0.21 -8.92 14 13 C 0.16 4.79 11.17 84.57 0.94 5.74 14 14 N -0.55 -17.82 10.34 -187.01 -1.93 -19.75 14 15 C 0.21 6.42 7.27 84.62 0.61 7.04 14 16 Cl -0.03 -0.86 29.10 -2.72 -0.08 -0.93 14 17 C -0.24 -7.67 9.76 22.51 0.22 -7.45 14 18 H 0.27 14.22 8.31 -92.71 -0.77 13.45 14 19 H 0.00 0.13 7.99 -2.39 -0.02 0.11 14 20 H 0.00 0.13 7.99 -2.39 -0.02 0.11 14 21 H 0.40 14.42 8.35 -92.70 -0.77 13.65 14 22 H 0.13 4.78 6.89 -2.91 -0.02 4.76 14 23 H 0.19 4.27 8.06 -2.91 -0.02 4.25 14 24 H 0.15 4.11 8.06 -2.91 -0.02 4.08 14 Total: -1.00 -56.86 236.26 2.14 -54.72 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 0.45 Total: 12.80 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 3.35 Total: -8.42 kcal Atomic # 7 Polarization: -97.40 SS G_CDS: -3.61 Total: -101.00 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.93 kcal Total: -56.86 2.14 -54.72 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307727241.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.014 kcal (2) G-P(sol) polarization free energy of solvation -56.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds