Wall clock time and date at job start Sun Mar 29 2020 21:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32113 * 122.71326 * 2 1 4 4 C 1.29684 * 116.86854 * 180.02562 * 3 2 1 5 5 N 1.38617 * 124.95217 * 179.97438 * 4 3 2 6 6 C 1.46499 * 120.00076 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.46992 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00129 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99861 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99594 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 119.99875 * 0.02562 * 9 7 6 12 12 H 1.48504 * 109.47061 * 90.00257 * 11 9 7 13 13 H 1.48497 * 109.46906 * 209.99430 * 11 9 7 14 14 H 1.48498 * 109.47403 * 329.99876 * 11 9 7 15 15 S 1.70965 * 110.09948 * 0.24092 * 4 3 2 16 16 C 1.33327 * 122.70620 * 180.02562 * 2 1 3 17 17 C 1.50698 * 125.95451 * 359.97438 * 16 2 1 18 18 H 1.09000 * 109.47003 * 89.97138 * 1 2 3 19 19 H 1.09000 * 109.47223 * 209.97462 * 1 2 3 20 20 H 1.09000 * 109.46890 * 329.97335 * 1 2 3 21 21 H 0.97000 * 119.99504 * 359.97438 * 5 4 3 22 22 H 1.09002 * 109.47391 * 59.99422 * 6 5 4 23 23 H 1.09001 * 109.46813 * 299.99479 * 6 5 4 24 24 H 0.97002 * 119.99739 * 180.02562 * 10 9 7 25 25 H 1.09001 * 109.46913 * 90.00330 * 17 16 2 26 26 H 1.08997 * 109.47408 * 210.00246 * 17 16 2 27 27 H 1.09000 * 109.47142 * 329.99774 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2210 1.1116 0.0000 4 6 3.5111 0.9795 -0.0005 5 7 4.4168 2.0289 -0.0011 6 6 5.8559 1.7545 -0.0022 7 6 6.6154 3.0561 -0.0033 8 1 6.0798 3.9939 -0.0028 9 6 7.9942 3.0496 -0.0040 10 7 8.6570 4.1855 -0.0044 11 14 8.9206 1.4276 -0.0042 12 1 9.1655 0.9976 -1.4043 13 1 10.2193 1.5992 0.6951 14 1 8.1136 0.3965 0.6964 15 16 3.9321 -0.6775 -0.0078 16 6 2.2274 -1.1219 -0.0005 17 6 1.6791 -2.5255 -0.0006 18 1 -0.3633 0.0005 -1.0277 19 1 -0.3634 -0.8902 0.5134 20 1 -0.3633 0.8898 0.5143 21 1 4.0977 2.9449 -0.0015 22 1 6.1159 1.1817 -0.8924 23 1 6.1172 1.1817 0.8876 24 1 9.6270 4.1810 -0.0052 25 1 1.5465 -2.8638 -1.0283 26 1 2.3759 -3.1879 0.5129 27 1 0.7181 -2.5402 0.5136 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307748734.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:08 Heat of formation + Delta-G solvation = 32.816876 kcal Electronic energy + Delta-G solvation = -11542.067306 eV Core-core repulsion = 9426.264109 eV Total energy + Delta-G solvation = -2115.803197 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.31525 -35.81847 -32.97103 -31.81638 -29.42692 -27.80987 -24.66983 -22.97769 -21.99125 -18.95135 -17.54718 -16.92973 -15.55700 -14.94779 -14.83723 -13.67902 -13.52991 -13.50654 -12.85022 -12.77883 -12.59492 -12.42502 -12.14346 -11.77982 -11.07668 -10.93626 -10.64212 -10.11861 -9.65480 -9.44873 -9.08259 -8.83417 -8.61102 -7.00624 -6.32378 -4.36701 1.49904 1.68322 2.29559 3.15322 3.22894 3.24832 3.38282 3.80137 4.20091 5.00752 5.07828 5.32925 5.38299 5.56392 5.65828 5.78503 5.97244 5.98813 6.20336 6.36796 6.71465 6.73977 7.15213 7.34976 8.03858 8.28703 8.51086 8.68865 9.24134 10.79529 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.058250 B = 0.007704 C = 0.006847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.569200 B = 3633.711927 C = 4088.529656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.116 3.884 3 N -0.575 5.575 4 C 0.337 3.663 5 N -0.663 5.663 6 C 0.221 3.779 7 C -0.544 4.544 8 H 0.084 0.916 9 C 0.080 3.920 10 N -0.886 5.886 11 Si 0.875 3.125 12 H -0.270 1.270 13 H -0.280 1.280 14 H -0.261 1.261 15 S 0.075 5.925 16 C -0.304 4.304 17 C -0.055 4.055 18 H 0.070 0.930 19 H 0.070 0.930 20 H 0.070 0.930 21 H 0.410 0.590 22 H 0.022 0.978 23 H 0.027 0.973 24 H 0.270 0.730 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.994 -11.757 0.028 16.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.016 4.016 3 N -0.303 5.303 4 C -0.036 4.036 5 N -0.299 5.299 6 C 0.098 3.902 7 C -0.582 4.582 8 H 0.102 0.898 9 C -0.124 4.124 10 N -0.522 5.522 11 Si 0.700 3.300 12 H -0.196 1.196 13 H -0.205 1.205 14 H -0.186 1.186 15 S 0.322 5.678 16 C -0.428 4.428 17 C -0.114 4.114 18 H 0.089 0.911 19 H 0.089 0.911 20 H 0.089 0.911 21 H 0.248 0.752 22 H 0.039 0.961 23 H 0.044 0.956 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.778 -11.666 0.024 15.221 hybrid contribution -0.224 -0.187 -0.025 0.293 sum -10.001 -11.852 -0.001 15.508 Atomic orbital electron populations 1.20308 0.88156 1.02631 1.02322 1.19658 0.97022 0.86137 0.98820 1.66326 1.02392 1.31159 1.30460 1.23616 0.90381 0.93278 0.96320 1.44681 1.04790 1.05132 1.75313 1.19757 0.74941 0.99059 0.96430 1.20913 0.91696 0.91606 1.54006 0.89844 1.24779 0.97146 0.96757 0.93761 1.69865 1.08140 1.25671 1.48573 0.86859 0.79963 0.83965 0.79183 1.19565 1.20527 1.18578 1.83902 1.07618 1.00597 1.75640 1.24808 0.93968 1.00079 1.23912 1.19952 1.00058 0.89846 1.01558 0.91091 0.91116 0.91084 0.75168 0.96062 0.95579 0.92008 0.91998 0.92209 0.91260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.91 10.05 36.01 0.36 -0.55 15 2 C 0.12 1.93 6.74 -84.19 -0.57 1.36 15 3 N -0.58 -11.32 10.59 -11.36 -0.12 -11.44 15 4 C 0.34 6.82 8.24 -87.68 -0.72 6.10 15 5 N -0.66 -14.23 5.71 -63.48 -0.36 -14.59 15 6 C 0.22 5.15 4.35 -5.19 -0.02 5.13 15 7 C -0.54 -14.70 9.83 -34.44 -0.34 -15.04 15 8 H 0.08 2.40 7.84 -52.49 -0.41 1.99 15 9 C 0.08 2.21 5.47 -17.82 -0.10 2.11 15 10 N -0.89 -25.84 13.96 55.43 0.77 -25.07 15 11 Si 0.87 20.24 27.47 -169.99 -4.67 15.58 15 12 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 13 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 14 H -0.26 -5.80 6.54 56.52 0.37 -5.43 15 15 S 0.07 1.33 22.32 -107.50 -2.40 -1.07 15 16 C -0.30 -4.76 6.57 -36.02 -0.24 -5.00 15 17 C -0.05 -0.62 10.09 36.00 0.36 -0.26 15 18 H 0.07 0.78 8.14 -51.93 -0.42 0.36 15 19 H 0.07 0.69 6.70 -51.93 -0.35 0.34 15 20 H 0.07 0.87 8.14 -51.93 -0.42 0.44 15 21 H 0.41 8.61 8.45 -40.82 -0.34 8.26 15 22 H 0.02 0.50 7.57 -51.93 -0.39 0.11 15 23 H 0.03 0.62 7.20 -51.93 -0.37 0.25 15 24 H 0.27 7.32 8.31 -40.82 -0.34 6.98 15 25 H 0.06 0.64 8.14 -51.93 -0.42 0.21 15 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 15 27 H 0.07 0.66 6.74 -51.93 -0.35 0.31 15 LS Contribution 247.51 15.07 3.73 3.73 Total: -1.00 -29.33 247.51 -7.39 -36.72 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -3.08 Total: 2.30 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -1.26 Total: -6.15 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: 0.29 Total: -51.10 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.67 Total: 15.58 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.40 Total: -1.07 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.33 -7.39 -36.72 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307748734.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.534 kcal (2) G-P(sol) polarization free energy of solvation -29.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds