Wall clock time and date at job start Sun Mar 29 2020 21:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 N 1.46500 * 109.47089 * 124.72256 * 3 2 1 5 5 N 1.40589 * 127.38837 * 269.67992 * 4 3 2 6 6 N 1.28895 * 106.84549 * 179.82913 * 5 4 3 7 7 N 1.28426 * 110.36607 * 0.45087 * 6 5 4 8 8 C 1.31589 * 110.49221 * 359.70671 * 7 6 5 9 9 S 1.76199 * 126.45915 * 179.97438 * 8 7 6 10 10 C 1.76191 * 100.00330 * 0.03709 * 9 8 7 11 11 H 1.08002 * 119.99821 * 0.02562 * 10 9 8 12 12 C 1.38744 * 120.00232 * 180.02562 * 10 9 8 13 13 N 1.31587 * 119.99668 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00016 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46866 * 89.99768 * 14 12 10 16 16 H 1.48494 * 109.47066 * 209.99889 * 14 12 10 17 17 H 1.48498 * 109.47285 * 329.99988 * 14 12 10 18 18 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 19 19 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 20 20 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 21 21 H 1.09002 * 109.47005 * 244.72313 * 3 2 1 22 22 H 1.08999 * 109.47073 * 4.72010 * 3 2 1 23 23 H 0.97005 * 119.99814 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9891 1.3347 1.1353 5 7 2.7352 1.8166 2.4313 6 7 3.8177 1.6494 3.1107 7 7 4.7294 1.1216 2.3762 8 6 4.2750 0.9089 1.1596 9 16 5.1705 0.2041 -0.1842 10 6 6.7221 -0.0836 0.5994 11 1 6.8601 0.1808 1.6374 12 6 7.7667 -0.6499 -0.1171 13 7 7.5983 -0.9725 -1.3816 14 14 9.4115 -0.9555 0.7139 15 1 9.4171 -2.3130 1.3160 16 1 10.5000 -0.8552 -0.2911 17 1 9.6248 0.0586 1.7775 18 1 -0.5400 -0.9353 0.0045 19 1 -0.5400 0.9353 -0.0045 20 1 1.8500 -0.9353 0.0046 21 1 2.6252 1.4004 -0.9293 22 1 1.3582 2.1318 0.0846 23 1 8.3287 -1.3681 -1.8826 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307956062.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:28 Heat of formation + Delta-G solvation = 124.430206 kcal Electronic energy + Delta-G solvation = -11398.090111 eV Core-core repulsion = 9182.719223 eV Total energy + Delta-G solvation = -2215.370888 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.043 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.85743 -35.91352 -32.85584 -32.44774 -31.19204 -27.03706 -25.86102 -22.77190 -22.11966 -20.12126 -18.23449 -16.75105 -15.82345 -15.77814 -15.06726 -14.84252 -13.77245 -13.41918 -12.87283 -12.03524 -11.81869 -11.53929 -11.24947 -11.21030 -11.12154 -10.37585 -10.33638 -10.05256 -9.76721 -9.59956 -9.24894 -9.12560 -7.16274 -6.63157 -4.41118 1.68795 1.90407 2.31005 3.10100 3.12435 3.16995 3.19453 3.25387 3.86620 4.63324 4.76071 4.82791 4.88016 5.18794 5.46625 5.71145 5.79218 6.13469 6.26872 6.47917 6.57166 6.85292 7.42670 8.22604 8.89618 9.35260 10.44678 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.043746 B = 0.009289 C = 0.007953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.907398 B = 3013.588058 C = 3520.022109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.172 4.172 3 C 0.158 3.842 4 N -0.391 5.391 5 N -0.128 5.128 6 N -0.049 5.049 7 N -0.347 5.347 8 C 0.210 3.790 9 S 0.182 5.818 10 C -0.545 4.545 11 H 0.110 0.890 12 C 0.079 3.921 13 N -0.874 5.874 14 Si 0.935 3.065 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.264 1.264 18 H 0.104 0.896 19 H 0.100 0.900 20 H 0.121 0.879 21 H 0.110 0.890 22 H 0.102 0.898 23 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.547 1.034 -2.360 8.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.192 4.192 3 C 0.036 3.964 4 N -0.192 5.192 5 N -0.116 5.116 6 N -0.045 5.045 7 N -0.206 5.206 8 C -0.169 4.169 9 S 0.410 5.590 10 C -0.694 4.694 11 H 0.128 0.872 12 C -0.131 4.131 13 N -0.508 5.508 14 Si 0.760 3.240 15 H -0.197 1.197 16 H -0.205 1.205 17 H -0.188 1.188 18 H 0.122 0.878 19 H 0.118 0.882 20 H 0.139 0.861 21 H 0.128 0.872 22 H 0.120 0.880 23 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.897 1.196 -2.317 9.272 hybrid contribution 1.116 -0.252 0.637 1.309 sum -7.782 0.944 -1.681 8.017 Atomic orbital electron populations 1.23886 0.95405 1.02300 0.98771 1.23185 0.96353 0.98479 1.01162 1.20844 0.91896 0.97391 0.86283 1.51324 1.09640 1.47391 1.10879 1.82166 1.19437 1.22667 0.87340 1.77663 0.94920 1.08667 1.23256 1.74950 1.23430 1.22111 1.00151 1.29116 0.86902 0.98658 1.02208 1.83588 1.08204 1.65646 1.01570 1.23354 0.95248 1.48494 1.02256 0.87245 1.25117 0.99784 0.93373 0.94826 1.69904 1.34038 1.38982 1.07885 0.85869 0.79647 0.79385 0.79108 1.19746 1.20525 1.18812 0.87780 0.88188 0.86141 0.87172 0.87999 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 14.32 29.01 0.42 -1.30 14 2 C -0.17 -2.23 9.85 -36.03 -0.35 -2.59 14 3 C 0.16 2.24 6.81 -5.19 -0.04 2.20 14 4 N -0.39 -7.66 3.68 -62.45 -0.23 -7.89 14 5 N -0.13 -2.74 13.93 60.35 0.84 -1.90 14 6 N -0.05 -1.16 13.38 60.35 0.81 -0.35 14 7 N -0.35 -8.66 11.00 30.53 0.34 -8.33 14 8 C 0.21 4.78 8.14 -89.06 -0.72 4.05 14 9 S 0.18 4.23 21.38 -107.50 -2.30 1.93 14 10 C -0.54 -14.50 9.38 30.92 0.29 -14.21 14 11 H 0.11 3.02 6.93 -52.49 -0.36 2.65 14 12 C 0.08 2.05 5.49 -17.47 -0.10 1.96 14 13 N -0.87 -23.09 13.22 55.49 0.73 -22.36 14 14 Si 0.94 20.35 29.55 -169.99 -5.02 15.33 14 15 H -0.27 -5.83 7.11 56.52 0.40 -5.43 14 16 H -0.28 -5.89 7.11 56.52 0.40 -5.49 14 17 H -0.26 -5.78 7.11 56.52 0.40 -5.38 14 18 H 0.10 0.93 8.06 -52.49 -0.42 0.51 14 19 H 0.10 0.88 7.84 -52.49 -0.41 0.47 14 20 H 0.12 1.69 8.06 -52.49 -0.42 1.26 14 21 H 0.11 1.42 7.85 -51.93 -0.41 1.02 14 22 H 0.10 1.19 7.79 -51.93 -0.40 0.79 14 23 H 0.28 6.82 8.31 -40.82 -0.34 6.48 14 LS Contribution 236.27 15.07 3.56 3.56 Total: -1.00 -29.66 236.27 -3.35 -33.01 By element: Atomic # 1 Polarization: -1.54 SS G_CDS: -1.57 Total: -3.11 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -0.51 Total: -9.89 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: 2.49 Total: -40.83 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 4.23 SS G_CDS: -2.30 Total: 1.93 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -29.66 -3.35 -33.01 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307956062.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.442 kcal (2) G-P(sol) polarization free energy of solvation -29.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds