Wall clock time and date at job start Sun Mar 29 2020 21:49:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31005 * 1
3 3 C 1.50702 * 119.99932 * 2 1
4 4 N 1.46500 * 109.47089 * 124.72256 * 3 2 1
5 5 N 1.40589 * 127.38837 * 269.67992 * 4 3 2
6 6 N 1.28895 * 106.84549 * 179.82913 * 5 4 3
7 7 N 1.28426 * 110.36607 * 0.45087 * 6 5 4
8 8 C 1.31589 * 110.49221 * 359.70671 * 7 6 5
9 9 S 1.76199 * 126.45915 * 179.97438 * 8 7 6
10 10 C 1.76191 * 100.00330 * 0.03709 * 9 8 7
11 11 H 1.08002 * 119.99821 * 0.02562 * 10 9 8
12 12 C 1.38744 * 120.00232 * 180.02562 * 10 9 8
13 13 N 1.31587 * 119.99668 * 359.97438 * 12 10 9
14 14 Si 1.86798 * 120.00016 * 180.02562 * 12 10 9
15 15 H 1.48502 * 109.46866 * 89.99768 * 14 12 10
16 16 H 1.48494 * 109.47066 * 209.99889 * 14 12 10
17 17 H 1.48498 * 109.47285 * 329.99988 * 14 12 10
18 18 H 1.07999 * 120.00046 * 180.27508 * 1 2 3
19 19 H 1.08002 * 119.99713 * 0.27722 * 1 2 3
20 20 H 1.08002 * 119.99708 * 179.71665 * 2 1 3
21 21 H 1.09002 * 109.47005 * 244.72313 * 3 2 1
22 22 H 1.08999 * 109.47073 * 4.72010 * 3 2 1
23 23 H 0.97005 * 119.99814 * 179.97438 * 13 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3101 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 7 2.9891 1.3347 1.1353
5 7 2.7352 1.8166 2.4313
6 7 3.8177 1.6494 3.1107
7 7 4.7294 1.1216 2.3762
8 6 4.2750 0.9089 1.1596
9 16 5.1705 0.2041 -0.1842
10 6 6.7221 -0.0836 0.5994
11 1 6.8601 0.1808 1.6374
12 6 7.7667 -0.6499 -0.1171
13 7 7.5983 -0.9725 -1.3816
14 14 9.4115 -0.9555 0.7139
15 1 9.4171 -2.3130 1.3160
16 1 10.5000 -0.8552 -0.2911
17 1 9.6248 0.0586 1.7775
18 1 -0.5400 -0.9353 0.0045
19 1 -0.5400 0.9353 -0.0045
20 1 1.8500 -0.9353 0.0046
21 1 2.6252 1.4004 -0.9293
22 1 1.3582 2.1318 0.0846
23 1 8.3287 -1.3681 -1.8826
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000307956062.mol2 23
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:49:27
Heat of formation + Delta-G solvation = 104.958235 kcal
Electronic energy + Delta-G solvation = -11398.934479 eV
Core-core repulsion = 9182.719223 eV
Total energy + Delta-G solvation = -2216.215256 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 212.043 amu
Computer time = 0.14 seconds
Orbital eigenvalues (eV)
-43.61752 -37.17939 -34.80883 -33.78591 -32.98344 -28.38476 -27.80053 -24.41481
-23.84446 -21.17186 -20.03475 -18.35707 -17.52370 -17.38449 -16.99073 -16.02177
-15.23280 -14.85484 -14.35944 -13.70849 -13.35808 -13.06839 -13.01948 -12.89218
-12.55855 -12.10923 -12.05611 -11.83365 -11.29409 -11.13851 -11.06110 -10.55849
-9.02499 -8.58008 -6.40398 0.00786 0.35708 1.01488 1.31737 1.39419
1.43965 1.54266 1.74622 2.07912 2.85122 2.86593 3.46313 3.76582
4.03028 4.15382 4.45501 4.48625 4.65288 4.94978 5.26204 5.43788
5.58003 5.66181 6.17855 6.91150 7.56847 8.50740
Molecular weight = 212.04amu
Principal moments of inertia in cm(-1)
A = 0.043746 B = 0.009289 C = 0.007953
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 639.907398 B = 3013.588058 C = 3520.022109
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C -0.208 4.208
3 C 0.145 3.855
4 N -0.371 5.371
5 N -0.116 5.116
6 N -0.069 5.069
7 N -0.379 5.379
8 C 0.202 3.798
9 S 0.190 5.810
10 C -0.577 4.577
11 H 0.092 0.908
12 C 0.041 3.959
13 N -0.897 5.897
14 Si 0.993 3.007
15 H -0.265 1.265
16 H -0.265 1.265
17 H -0.270 1.270
18 H 0.121 0.879
19 H 0.123 0.877
20 H 0.103 0.897
21 H 0.121 0.879
22 H 0.133 0.867
23 H 0.284 0.716
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.663 1.102 -2.813 10.125
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C -0.227 4.227
3 C 0.026 3.974
4 N -0.173 5.173
5 N -0.104 5.104
6 N -0.065 5.065
7 N -0.239 5.239
8 C -0.178 4.178
9 S 0.418 5.582
10 C -0.725 4.725
11 H 0.110 0.890
12 C -0.167 4.167
13 N -0.532 5.532
14 Si 0.815 3.185
15 H -0.190 1.190
16 H -0.190 1.190
17 H -0.195 1.195
18 H 0.139 0.861
19 H 0.141 0.859
20 H 0.121 0.879
21 H 0.138 0.862
22 H 0.151 0.849
23 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -10.050 1.267 -2.788 10.506
hybrid contribution 1.221 -0.234 0.750 1.452
sum -8.829 1.033 -2.039 9.120
Atomic orbital electron populations
1.24225 0.94364 1.04235 0.93983 1.22991 0.97239 0.97036 1.05473
1.21424 0.91898 0.99463 0.84655 1.51723 1.09253 1.45022 1.11263
1.82040 1.18808 1.21509 0.88037 1.77650 0.95239 1.09864 1.23780
1.74867 1.24755 1.22957 1.01295 1.28972 0.88102 0.99148 1.01598
1.83262 1.06872 1.66696 1.01408 1.23506 0.97376 1.49596 1.02026
0.89021 1.25889 1.02669 0.92771 0.95350 1.69939 1.35251 1.39258
1.08742 0.85011 0.76080 0.79152 0.78261 1.19040 1.18953 1.19454
0.86072 0.85914 0.87920 0.86160 0.84877 0.90605
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.23 14.32 67.78 0.97 -1.26 14
2 C -0.21 -4.96 9.85 25.64 0.25 -4.71 14
3 C 0.15 3.80 6.81 85.63 0.58 4.38 14
4 N -0.37 -14.13 3.68 -351.49 -1.29 -15.42 14
5 N -0.12 -4.82 13.93 37.02 0.52 -4.31 14
6 N -0.07 -3.28 13.38 37.02 0.50 -2.78 14
7 N -0.38 -19.14 11.00 -57.33 -0.63 -19.77 14
8 C 0.20 9.21 8.14 179.80 1.46 10.68 14
9 S 0.19 8.91 21.38 -56.49 -1.21 7.71 14
10 C -0.58 -31.17 9.38 67.94 0.64 -30.54 14
11 H 0.09 5.19 6.93 -2.91 -0.02 5.17 14
12 C 0.04 2.13 5.49 84.85 0.47 2.60 14
13 N -0.90 -47.23 13.22 21.64 0.29 -46.94 14
14 Si 0.99 41.51 29.55 68.60 2.03 43.53 14
15 H -0.27 -10.74 7.11 99.48 0.71 -10.03 14
16 H -0.27 -10.35 7.11 99.48 0.71 -9.65 14
17 H -0.27 -11.44 7.11 99.48 0.71 -10.74 14
18 H 0.12 1.70 8.06 -2.91 -0.02 1.68 14
19 H 0.12 1.57 7.84 -2.91 -0.02 1.55 14
20 H 0.10 2.82 8.06 -2.91 -0.02 2.80 14
21 H 0.12 2.91 7.85 -2.39 -0.02 2.89 14
22 H 0.13 2.64 7.79 -2.39 -0.02 2.62 14
23 H 0.28 13.81 8.31 -92.70 -0.77 13.04 14
Total: -1.00 -63.28 236.27 5.79 -57.49
By element:
Atomic # 1 Polarization: -1.89 SS G_CDS: 1.22 Total: -0.66 kcal
Atomic # 6 Polarization: -23.22 SS G_CDS: 4.37 Total: -18.85 kcal
Atomic # 7 Polarization: -88.59 SS G_CDS: -0.63 Total: -89.22 kcal
Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.53 kcal
Atomic # 16 Polarization: 8.91 SS G_CDS: -1.21 Total: 7.71 kcal
Total: -63.28 5.79 -57.49 kcal
The number of atoms in the molecule is 23
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000307956062.mol2 23
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 162.451 kcal
(2) G-P(sol) polarization free energy of solvation -63.282 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.169 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.789 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.493 kcal
(6) G-S(sol) free energy of system = (1) + (5) 104.958 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.14 seconds