Wall clock time and date at job start Sun Mar 29 2020 21:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 N 1.46500 * 109.47089 * 124.72256 * 3 2 1 5 5 N 1.40589 * 127.38837 * 269.67992 * 4 3 2 6 6 N 1.28895 * 106.84549 * 179.82913 * 5 4 3 7 7 N 1.28426 * 110.36607 * 0.45087 * 6 5 4 8 8 C 1.31589 * 110.49221 * 359.70671 * 7 6 5 9 9 S 1.76199 * 126.45915 * 179.97438 * 8 7 6 10 10 C 1.76191 * 100.00330 * 0.03709 * 9 8 7 11 11 H 1.08002 * 119.99821 * 0.02562 * 10 9 8 12 12 C 1.38744 * 120.00232 * 180.02562 * 10 9 8 13 13 N 1.31587 * 119.99668 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00016 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46866 * 89.99768 * 14 12 10 16 16 H 1.48494 * 109.47066 * 209.99889 * 14 12 10 17 17 H 1.48498 * 109.47285 * 329.99988 * 14 12 10 18 18 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 19 19 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 20 20 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 21 21 H 1.09002 * 109.47005 * 244.72313 * 3 2 1 22 22 H 1.08999 * 109.47073 * 4.72010 * 3 2 1 23 23 H 0.97005 * 119.99814 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9891 1.3347 1.1353 5 7 2.7352 1.8166 2.4313 6 7 3.8177 1.6494 3.1107 7 7 4.7294 1.1216 2.3762 8 6 4.2750 0.9089 1.1596 9 16 5.1705 0.2041 -0.1842 10 6 6.7221 -0.0836 0.5994 11 1 6.8601 0.1808 1.6374 12 6 7.7667 -0.6499 -0.1171 13 7 7.5983 -0.9725 -1.3816 14 14 9.4115 -0.9555 0.7139 15 1 9.4171 -2.3130 1.3160 16 1 10.5000 -0.8552 -0.2911 17 1 9.6248 0.0586 1.7775 18 1 -0.5400 -0.9353 0.0045 19 1 -0.5400 0.9353 -0.0045 20 1 1.8500 -0.9353 0.0046 21 1 2.6252 1.4004 -0.9293 22 1 1.3582 2.1318 0.0846 23 1 8.3287 -1.3681 -1.8826 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307956062.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:27 Heat of formation + Delta-G solvation = 104.958235 kcal Electronic energy + Delta-G solvation = -11398.934479 eV Core-core repulsion = 9182.719223 eV Total energy + Delta-G solvation = -2216.215256 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.043 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.61752 -37.17939 -34.80883 -33.78591 -32.98344 -28.38476 -27.80053 -24.41481 -23.84446 -21.17186 -20.03475 -18.35707 -17.52370 -17.38449 -16.99073 -16.02177 -15.23280 -14.85484 -14.35944 -13.70849 -13.35808 -13.06839 -13.01948 -12.89218 -12.55855 -12.10923 -12.05611 -11.83365 -11.29409 -11.13851 -11.06110 -10.55849 -9.02499 -8.58008 -6.40398 0.00786 0.35708 1.01488 1.31737 1.39419 1.43965 1.54266 1.74622 2.07912 2.85122 2.86593 3.46313 3.76582 4.03028 4.15382 4.45501 4.48625 4.65288 4.94978 5.26204 5.43788 5.58003 5.66181 6.17855 6.91150 7.56847 8.50740 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.043746 B = 0.009289 C = 0.007953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.907398 B = 3013.588058 C = 3520.022109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.208 4.208 3 C 0.145 3.855 4 N -0.371 5.371 5 N -0.116 5.116 6 N -0.069 5.069 7 N -0.379 5.379 8 C 0.202 3.798 9 S 0.190 5.810 10 C -0.577 4.577 11 H 0.092 0.908 12 C 0.041 3.959 13 N -0.897 5.897 14 Si 0.993 3.007 15 H -0.265 1.265 16 H -0.265 1.265 17 H -0.270 1.270 18 H 0.121 0.879 19 H 0.123 0.877 20 H 0.103 0.897 21 H 0.121 0.879 22 H 0.133 0.867 23 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.663 1.102 -2.813 10.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.227 4.227 3 C 0.026 3.974 4 N -0.173 5.173 5 N -0.104 5.104 6 N -0.065 5.065 7 N -0.239 5.239 8 C -0.178 4.178 9 S 0.418 5.582 10 C -0.725 4.725 11 H 0.110 0.890 12 C -0.167 4.167 13 N -0.532 5.532 14 Si 0.815 3.185 15 H -0.190 1.190 16 H -0.190 1.190 17 H -0.195 1.195 18 H 0.139 0.861 19 H 0.141 0.859 20 H 0.121 0.879 21 H 0.138 0.862 22 H 0.151 0.849 23 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.050 1.267 -2.788 10.506 hybrid contribution 1.221 -0.234 0.750 1.452 sum -8.829 1.033 -2.039 9.120 Atomic orbital electron populations 1.24225 0.94364 1.04235 0.93983 1.22991 0.97239 0.97036 1.05473 1.21424 0.91898 0.99463 0.84655 1.51723 1.09253 1.45022 1.11263 1.82040 1.18808 1.21509 0.88037 1.77650 0.95239 1.09864 1.23780 1.74867 1.24755 1.22957 1.01295 1.28972 0.88102 0.99148 1.01598 1.83262 1.06872 1.66696 1.01408 1.23506 0.97376 1.49596 1.02026 0.89021 1.25889 1.02669 0.92771 0.95350 1.69939 1.35251 1.39258 1.08742 0.85011 0.76080 0.79152 0.78261 1.19040 1.18953 1.19454 0.86072 0.85914 0.87920 0.86160 0.84877 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 14.32 67.78 0.97 -1.26 14 2 C -0.21 -4.96 9.85 25.64 0.25 -4.71 14 3 C 0.15 3.80 6.81 85.63 0.58 4.38 14 4 N -0.37 -14.13 3.68 -351.49 -1.29 -15.42 14 5 N -0.12 -4.82 13.93 37.02 0.52 -4.31 14 6 N -0.07 -3.28 13.38 37.02 0.50 -2.78 14 7 N -0.38 -19.14 11.00 -57.33 -0.63 -19.77 14 8 C 0.20 9.21 8.14 179.80 1.46 10.68 14 9 S 0.19 8.91 21.38 -56.49 -1.21 7.71 14 10 C -0.58 -31.17 9.38 67.94 0.64 -30.54 14 11 H 0.09 5.19 6.93 -2.91 -0.02 5.17 14 12 C 0.04 2.13 5.49 84.85 0.47 2.60 14 13 N -0.90 -47.23 13.22 21.64 0.29 -46.94 14 14 Si 0.99 41.51 29.55 68.60 2.03 43.53 14 15 H -0.27 -10.74 7.11 99.48 0.71 -10.03 14 16 H -0.27 -10.35 7.11 99.48 0.71 -9.65 14 17 H -0.27 -11.44 7.11 99.48 0.71 -10.74 14 18 H 0.12 1.70 8.06 -2.91 -0.02 1.68 14 19 H 0.12 1.57 7.84 -2.91 -0.02 1.55 14 20 H 0.10 2.82 8.06 -2.91 -0.02 2.80 14 21 H 0.12 2.91 7.85 -2.39 -0.02 2.89 14 22 H 0.13 2.64 7.79 -2.39 -0.02 2.62 14 23 H 0.28 13.81 8.31 -92.70 -0.77 13.04 14 Total: -1.00 -63.28 236.27 5.79 -57.49 By element: Atomic # 1 Polarization: -1.89 SS G_CDS: 1.22 Total: -0.66 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: 4.37 Total: -18.85 kcal Atomic # 7 Polarization: -88.59 SS G_CDS: -0.63 Total: -89.22 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.53 kcal Atomic # 16 Polarization: 8.91 SS G_CDS: -1.21 Total: 7.71 kcal Total: -63.28 5.79 -57.49 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307956062.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.451 kcal (2) G-P(sol) polarization free energy of solvation -63.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds