Wall clock time and date at job start Sun Mar 29 2020 21:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48505 * 109.46678 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47258 * 299.99866 * 3 2 1 6 6 H 1.48493 * 109.47346 * 60.00472 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.46840 * 180.02562 * 11 10 9 13 13 C 1.38608 * 119.99898 * 179.97438 * 12 11 10 14 14 N 1.29692 * 124.95195 * 359.70370 * 13 12 11 15 15 C 1.32122 * 116.86532 * 179.81175 * 14 13 12 16 16 C 1.33320 * 114.58095 * 0.46891 * 15 14 13 17 17 S 1.70963 * 124.95008 * 179.97438 * 13 12 11 18 18 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 20 20 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 21 21 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 22 22 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 23 23 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 24 24 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 25 25 H 0.97000 * 120.00420 * 0.02562 * 12 11 10 26 26 H 1.07999 * 122.70253 * 180.22917 * 15 14 13 27 27 H 1.08003 * 125.95033 * 179.75914 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4321 -6.1006 -0.0018 13 6 1.9700 -7.4074 -0.0008 14 7 0.7201 -7.7535 0.0061 15 6 0.4592 -9.0487 0.0020 16 6 1.5383 -9.8318 0.0010 17 16 2.9646 -8.7979 -0.0020 18 1 -0.4849 0.8401 0.0004 19 1 0.6240 -2.5566 -0.8903 20 1 0.6246 -2.5571 0.8897 21 1 2.8725 -3.6048 0.8878 22 1 2.8712 -3.6040 -0.8921 23 1 0.8543 -5.0449 0.8894 24 1 0.8525 -5.0447 -0.8905 25 1 3.3858 -5.9235 -0.0021 26 1 -0.5469 -9.4413 0.0035 27 1 1.5379 -10.9118 0.0016 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308084539.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:15 Heat of formation + Delta-G solvation = 11.863514 kcal Electronic energy + Delta-G solvation = -11215.980172 eV Core-core repulsion = 9099.268369 eV Total energy + Delta-G solvation = -2116.711803 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.50690 -37.63042 -35.46170 -33.27566 -30.21702 -28.48832 -25.69285 -24.38857 -22.38434 -20.63372 -19.67636 -18.47467 -17.04461 -16.55543 -16.51011 -16.14363 -15.45317 -15.37886 -14.36754 -13.90800 -13.69968 -13.66196 -12.81925 -12.56628 -12.36175 -12.31136 -11.83222 -11.51560 -11.19604 -11.13412 -10.56847 -10.46783 -10.15983 -8.66819 -8.20586 -6.31965 0.12471 0.20162 0.92746 1.41201 1.41274 1.54574 2.10363 2.31143 2.42724 3.13240 3.76785 4.15801 4.21475 4.54663 4.58309 4.75076 4.94367 4.94665 5.14850 5.23846 5.49851 5.69675 5.83155 5.88268 6.22122 6.24887 6.85392 7.15547 7.37656 8.91739 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.093511 B = 0.004836 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 299.358835 B = 5789.074390 C = 6062.684223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.259 1.259 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.065 0.935 9 C 0.026 3.974 10 C -0.104 4.104 11 C 0.152 3.848 12 N -0.688 5.688 13 C 0.298 3.702 14 N -0.594 5.594 15 C 0.064 3.936 16 C -0.296 4.296 17 S 0.111 5.889 18 H 0.263 0.737 19 H -0.007 1.007 20 H -0.007 1.007 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.423 0.577 26 H 0.192 0.808 27 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.740 -17.789 -0.015 19.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.183 1.183 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.579 4.579 8 H 0.083 0.917 9 C -0.012 4.012 10 C -0.142 4.142 11 C 0.026 3.974 12 N -0.329 5.329 13 C -0.073 4.073 14 N -0.322 5.322 15 C -0.085 4.085 16 C -0.437 4.437 17 S 0.359 5.641 18 H 0.072 0.928 19 H 0.011 0.989 20 H 0.011 0.989 21 H 0.084 0.916 22 H 0.084 0.916 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.262 0.738 26 H 0.208 0.792 27 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 7.139 -17.315 -0.011 18.729 hybrid contribution -0.705 0.817 0.001 1.080 sum 6.433 -16.498 -0.010 17.708 Atomic orbital electron populations 1.70118 1.07901 1.27749 1.51705 1.26021 0.95768 1.03536 0.94769 0.85362 0.79152 0.78632 0.77672 1.18305 1.20518 1.20507 1.21709 0.93716 0.92065 1.50425 0.91673 1.18916 0.94352 0.92767 0.95141 1.21610 0.98574 0.92031 1.01951 1.21180 0.91308 0.84414 1.00533 1.44102 1.09535 0.99721 1.79509 1.24015 0.92435 0.92439 0.98392 1.66461 1.17509 1.19971 1.28267 1.21791 1.01658 0.85634 0.99446 1.26815 0.92431 1.05378 1.19056 1.83683 1.10881 0.95853 1.73717 0.92779 0.98856 0.98851 0.91566 0.91550 0.93360 0.93348 0.73820 0.79172 0.77916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.19 13.29 21.45 0.28 -56.90 15 2 C 0.00 -0.19 5.46 84.65 0.46 0.27 15 3 Si 0.97 44.00 29.54 68.60 2.03 46.02 15 4 H -0.26 -11.11 7.11 99.48 0.71 -10.41 15 5 H -0.28 -12.43 7.11 99.48 0.71 -11.73 15 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 15 7 C -0.54 -30.41 9.11 25.60 0.23 -30.18 15 8 H 0.07 3.46 7.74 -2.91 -0.02 3.44 15 9 C 0.03 1.36 4.97 29.85 0.15 1.51 15 10 C -0.10 -4.05 5.27 30.59 0.16 -3.89 15 11 C 0.15 5.42 5.95 86.38 0.51 5.94 15 12 N -0.69 -20.03 5.71 -351.01 -2.01 -22.04 15 13 C 0.30 8.66 8.09 179.32 1.45 10.11 15 14 N -0.59 -18.97 10.14 -202.03 -2.05 -21.02 15 15 C 0.06 1.54 11.34 83.54 0.95 2.49 15 16 C -0.30 -5.73 11.34 66.71 0.76 -4.97 15 17 S 0.11 2.33 23.22 -56.49 -1.31 1.02 15 18 H 0.26 15.10 8.31 -92.71 -0.77 14.33 15 19 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 15 20 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 15 21 H 0.07 2.44 8.14 -2.39 -0.02 2.42 15 22 H 0.07 2.45 8.14 -2.39 -0.02 2.43 15 23 H 0.05 1.86 8.14 -2.39 -0.02 1.84 15 24 H 0.05 1.86 8.14 -2.39 -0.02 1.84 15 25 H 0.42 9.97 8.60 -92.71 -0.80 9.17 15 26 H 0.19 3.53 8.06 -2.91 -0.02 3.50 15 27 H 0.20 2.45 8.06 -2.91 -0.02 2.42 15 Total: -1.00 -66.91 254.36 1.99 -64.92 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: 0.37 Total: 6.72 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: 4.67 Total: -18.72 kcal Atomic # 7 Polarization: -96.19 SS G_CDS: -3.77 Total: -99.96 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -1.31 Total: 1.02 kcal Total: -66.91 1.99 -64.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308084539.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.787 kcal (2) G-P(sol) polarization free energy of solvation -66.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds