Wall clock time and date at job start Sun Mar 29 2020 21:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34926 * 122.43784 * 2 1 4 4 C 1.32987 * 114.60497 * 179.97438 * 3 2 1 5 5 S 1.75908 * 109.25931 * 0.02562 * 4 3 2 6 6 C 1.34568 * 122.43516 * 179.71399 * 2 1 3 7 7 N 1.32759 * 125.02107 * 0.02562 * 6 2 1 8 8 C 1.34150 * 120.00161 * 180.02562 * 7 6 2 9 9 O 1.22311 * 120.00108 * 359.97438 * 8 7 6 10 10 C 1.41017 * 120.00038 * 179.97438 * 8 7 6 11 11 H 1.07997 * 120.00025 * 0.02562 * 10 8 7 12 12 C 1.40065 * 119.99905 * 179.97438 * 10 8 7 13 13 N 1.30665 * 120.00061 * 0.02562 * 12 10 8 14 14 Si 1.86799 * 119.99943 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47218 * 90.00310 * 14 12 10 16 16 H 1.48492 * 109.47222 * 210.00576 * 14 12 10 17 17 H 1.48504 * 109.47138 * 330.00500 * 14 12 10 18 18 H 1.09002 * 109.47391 * 90.02119 * 1 2 3 19 19 H 1.09001 * 109.46813 * 330.02176 * 1 2 3 20 20 H 1.09004 * 109.47041 * 210.02303 * 1 2 3 21 21 H 1.08003 * 122.70074 * 359.95831 * 3 2 1 22 22 H 1.07999 * 125.36958 * 179.97438 * 4 3 2 23 23 H 0.96999 * 119.99656 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1887 1.1387 0.0000 4 6 3.5062 0.9575 0.0005 5 16 3.8547 -0.7667 0.0003 6 6 2.1867 -1.1357 0.0057 7 7 1.6778 -2.3619 0.0113 8 6 2.4936 -3.4268 0.0172 9 8 3.7063 -3.2681 0.0169 10 6 1.9529 -4.7292 0.0237 11 1 0.8820 -4.8693 0.0236 12 6 2.8047 -5.8410 0.0293 13 7 4.1003 -5.6715 0.0290 14 14 2.0885 -7.5662 0.0387 15 1 1.8983 -8.0309 -1.3588 16 1 3.0187 -8.4845 0.7434 17 1 0.7790 -7.5548 0.7390 18 1 -0.3634 -0.0004 -1.0277 19 1 -0.3633 0.8902 0.5135 20 1 -0.3633 -0.8898 0.5142 21 1 1.7346 2.1187 -0.0007 22 1 4.2455 1.7447 0.0002 23 1 4.6901 -6.4415 0.0333 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308093867.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:50 Heat of formation + Delta-G solvation = 24.405145 kcal Electronic energy + Delta-G solvation = -11695.965585 eV Core-core repulsion = 9443.964534 eV Total energy + Delta-G solvation = -2252.001052 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.036 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.67063 -37.25073 -33.13569 -31.91896 -30.86305 -27.58458 -26.15221 -23.64761 -20.66889 -19.25963 -17.56912 -16.02011 -15.77210 -15.25591 -15.23164 -14.13416 -13.50106 -13.28950 -12.76114 -12.70543 -12.05273 -11.77061 -11.32100 -11.06025 -10.62070 -10.37305 -10.06417 -9.60686 -8.94230 -8.57421 -8.53672 -7.43329 -6.66340 -6.32747 -4.75983 2.07049 2.29000 2.65148 2.87764 3.12326 3.15712 3.20856 3.42204 4.05507 4.58504 5.15976 5.24792 5.58436 5.80584 5.96514 5.99418 6.01136 6.39068 7.26951 7.30734 7.42461 8.19840 8.67800 8.83722 9.07338 10.40184 10.69214 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.059534 B = 0.009264 C = 0.008052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.209112 B = 3021.678942 C = 3476.740279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.499 5.499 3 C 0.063 3.937 4 C -0.348 4.348 5 S 0.179 5.821 6 C 0.315 3.685 7 N -0.592 5.592 8 C 0.488 3.512 9 O -0.571 6.571 10 C -0.475 4.475 11 H 0.076 0.924 12 C 0.075 3.925 13 N -0.736 5.736 14 Si 0.916 3.084 15 H -0.269 1.269 16 H -0.277 1.277 17 H -0.261 1.261 18 H 0.062 0.938 19 H 0.071 0.929 20 H 0.091 0.909 21 H 0.166 0.834 22 H 0.163 0.837 23 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.359 9.997 0.046 10.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.198 5.198 3 C -0.070 4.070 4 C -0.489 4.489 5 S 0.423 5.577 6 C -0.062 4.062 7 N -0.344 5.344 8 C 0.297 3.703 9 O -0.462 6.462 10 C -0.509 4.509 11 H 0.094 0.906 12 C -0.148 4.148 13 N -0.365 5.365 14 Si 0.740 3.260 15 H -0.194 1.194 16 H -0.202 1.202 17 H -0.185 1.185 18 H 0.081 0.919 19 H 0.090 0.910 20 H 0.110 0.890 21 H 0.184 0.816 22 H 0.180 0.820 23 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.290 8.772 0.048 9.369 hybrid contribution -1.109 0.200 -0.022 1.127 sum -4.399 8.972 0.026 9.992 Atomic orbital electron populations 1.21834 0.77160 1.03836 1.02677 1.43077 1.07576 1.02800 1.66353 1.20532 0.91882 0.90568 1.03991 1.26252 0.98122 1.07196 1.17305 1.86113 1.02696 0.91626 1.77277 1.23949 0.94291 0.91264 0.96657 1.69248 1.39414 0.95265 1.30432 1.17605 0.85234 0.87296 0.80117 1.90565 1.16806 1.84074 1.54775 1.19868 0.94822 0.89506 1.46738 0.90583 1.25964 0.94469 1.01374 0.93008 1.70060 1.03459 1.31863 1.31099 0.86220 0.79803 0.80860 0.79113 1.19430 1.20183 1.18536 0.91895 0.91032 0.89033 0.81638 0.81966 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.24 10.68 59.85 0.64 1.88 14 2 N -0.50 -8.89 2.99 -127.20 -0.38 -9.27 14 3 C 0.06 0.92 10.68 -18.01 -0.19 0.73 14 4 C -0.35 -5.58 11.24 28.91 0.32 -5.25 14 5 S 0.18 3.95 19.91 -107.50 -2.14 1.81 14 6 C 0.31 7.33 7.64 -88.89 -0.68 6.65 14 7 N -0.59 -16.03 9.84 -16.35 -0.16 -16.19 14 8 C 0.49 15.05 7.46 -15.49 -0.12 14.93 14 9 O -0.57 -18.54 12.13 4.63 0.06 -18.48 14 10 C -0.47 -14.21 9.38 -37.84 -0.35 -14.57 14 11 H 0.08 2.16 7.85 -52.49 -0.41 1.75 14 12 C 0.07 2.11 5.49 -17.36 -0.10 2.02 14 13 N -0.74 -21.87 11.71 55.55 0.65 -21.22 14 14 Si 0.92 20.22 29.56 -169.99 -5.02 15.19 14 15 H -0.27 -5.78 7.11 56.52 0.40 -5.38 14 16 H -0.28 -5.88 7.11 56.52 0.40 -5.48 14 17 H -0.26 -5.63 7.11 56.52 0.40 -5.22 14 18 H 0.06 0.80 8.14 -51.93 -0.42 0.37 14 19 H 0.07 0.70 8.09 -51.93 -0.42 0.28 14 20 H 0.09 1.43 7.73 -51.93 -0.40 1.02 14 21 H 0.17 1.63 8.06 -52.48 -0.42 1.21 14 22 H 0.16 2.07 8.06 -52.49 -0.42 1.65 14 23 H 0.27 7.25 8.29 -40.82 -0.34 6.91 14 LS Contribution 226.25 15.07 3.41 3.41 Total: -1.00 -35.57 226.25 -5.70 -41.27 By element: Atomic # 1 Polarization: -1.26 SS G_CDS: -1.64 Total: -2.90 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -0.47 Total: 6.38 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: 0.11 Total: -46.68 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: 0.06 Total: -18.48 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: 3.95 SS G_CDS: -2.14 Total: 1.81 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -35.57 -5.70 -41.27 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308093867.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.671 kcal (2) G-P(sol) polarization free energy of solvation -35.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds