Wall clock time and date at job start Sun Mar 29 2020 21:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34926 * 122.43784 * 2 1 4 4 C 1.32987 * 114.60497 * 179.97438 * 3 2 1 5 5 S 1.75908 * 109.25931 * 0.02562 * 4 3 2 6 6 C 1.34568 * 122.43516 * 179.71399 * 2 1 3 7 7 N 1.32759 * 125.02107 * 0.02562 * 6 2 1 8 8 C 1.34150 * 120.00161 * 180.02562 * 7 6 2 9 9 O 1.22311 * 120.00108 * 359.97438 * 8 7 6 10 10 C 1.41017 * 120.00038 * 179.97438 * 8 7 6 11 11 H 1.07997 * 120.00025 * 0.02562 * 10 8 7 12 12 C 1.40065 * 119.99905 * 179.97438 * 10 8 7 13 13 N 1.30665 * 120.00061 * 0.02562 * 12 10 8 14 14 Si 1.86799 * 119.99943 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47218 * 90.00310 * 14 12 10 16 16 H 1.48492 * 109.47222 * 210.00576 * 14 12 10 17 17 H 1.48504 * 109.47138 * 330.00500 * 14 12 10 18 18 H 1.09002 * 109.47391 * 90.02119 * 1 2 3 19 19 H 1.09001 * 109.46813 * 330.02176 * 1 2 3 20 20 H 1.09004 * 109.47041 * 210.02303 * 1 2 3 21 21 H 1.08003 * 122.70074 * 359.95831 * 3 2 1 22 22 H 1.07999 * 125.36958 * 179.97438 * 4 3 2 23 23 H 0.96999 * 119.99656 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1887 1.1387 0.0000 4 6 3.5062 0.9575 0.0005 5 16 3.8547 -0.7667 0.0003 6 6 2.1867 -1.1357 0.0057 7 7 1.6778 -2.3619 0.0113 8 6 2.4936 -3.4268 0.0172 9 8 3.7063 -3.2681 0.0169 10 6 1.9529 -4.7292 0.0237 11 1 0.8820 -4.8693 0.0236 12 6 2.8047 -5.8410 0.0293 13 7 4.1003 -5.6715 0.0290 14 14 2.0885 -7.5662 0.0387 15 1 1.8983 -8.0309 -1.3588 16 1 3.0187 -8.4845 0.7434 17 1 0.7790 -7.5548 0.7390 18 1 -0.3634 -0.0004 -1.0277 19 1 -0.3633 0.8902 0.5135 20 1 -0.3633 -0.8898 0.5142 21 1 1.7346 2.1187 -0.0007 22 1 4.2455 1.7447 0.0002 23 1 4.6901 -6.4415 0.0333 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308093867.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:50 Heat of formation + Delta-G solvation = -2.989686 kcal Electronic energy + Delta-G solvation = -11697.153514 eV Core-core repulsion = 9443.964534 eV Total energy + Delta-G solvation = -2253.188981 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.036 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.19344 -39.31347 -35.16060 -33.85877 -32.26576 -29.54446 -27.78903 -25.20318 -22.53032 -20.80504 -19.33016 -18.08680 -17.47411 -16.93708 -16.71915 -16.04022 -15.28528 -14.63431 -14.57803 -14.29222 -13.36193 -13.22064 -13.09595 -12.78342 -12.75498 -12.07879 -11.68614 -11.33821 -10.94499 -10.50160 -10.23271 -9.55607 -8.44376 -8.41168 -6.95774 0.33643 0.54681 1.23680 1.35359 1.43344 1.43523 1.54183 1.93599 2.22640 2.51857 3.80707 3.89514 4.23418 4.49691 4.55544 4.79449 4.86872 4.90878 5.17165 5.83259 5.93405 6.00568 6.67948 6.72786 6.97566 8.34799 8.57358 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.059534 B = 0.009264 C = 0.008052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.209112 B = 3021.678942 C = 3476.740279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.490 5.490 3 C 0.080 3.920 4 C -0.336 4.336 5 S 0.105 5.895 6 C 0.312 3.688 7 N -0.634 5.634 8 C 0.471 3.529 9 O -0.611 6.611 10 C -0.518 4.518 11 H 0.077 0.923 12 C 0.022 3.978 13 N -0.788 5.788 14 Si 1.007 2.993 15 H -0.257 1.257 16 H -0.262 1.262 17 H -0.253 1.253 18 H 0.077 0.923 19 H 0.127 0.873 20 H 0.066 0.934 21 H 0.236 0.764 22 H 0.204 0.796 23 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.862 12.056 0.045 13.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.188 5.188 3 C -0.050 4.050 4 C -0.476 4.476 5 S 0.350 5.650 6 C -0.063 4.063 7 N -0.390 5.390 8 C 0.280 3.720 9 O -0.505 6.505 10 C -0.552 4.552 11 H 0.095 0.905 12 C -0.196 4.196 13 N -0.416 5.416 14 Si 0.824 3.176 15 H -0.181 1.181 16 H -0.186 1.186 17 H -0.176 1.176 18 H 0.095 0.905 19 H 0.145 0.855 20 H 0.085 0.915 21 H 0.252 0.748 22 H 0.221 0.779 23 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.810 10.926 0.045 11.939 hybrid contribution -0.635 -0.020 -0.027 0.636 sum -5.445 10.907 0.018 12.191 Atomic orbital electron populations 1.22181 0.74437 1.05372 1.04144 1.43618 1.09429 1.01927 1.63865 1.21581 0.91286 0.91609 1.00562 1.26386 0.99809 1.02947 1.18424 1.86276 1.03649 0.97993 1.77115 1.24260 0.95006 0.92022 0.95009 1.69151 1.38736 0.95978 1.35099 1.18061 0.85325 0.88935 0.79655 1.90538 1.17997 1.85711 1.56211 1.20278 0.95295 0.90679 1.48969 0.90480 1.27203 0.94582 1.06464 0.91362 1.70180 1.05359 1.33972 1.32124 0.84900 0.79150 0.73672 0.79839 1.18090 1.18589 1.17593 0.90453 0.85519 0.91508 0.74765 0.77917 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.97 10.68 127.77 1.36 3.34 14 2 N -0.49 -16.09 2.99 -556.35 -1.67 -17.75 14 3 C 0.08 1.91 10.68 83.05 0.89 2.79 14 4 C -0.34 -9.51 11.24 66.65 0.75 -8.76 14 5 S 0.11 4.71 19.91 -56.49 -1.12 3.59 14 6 C 0.31 14.67 7.64 179.74 1.37 16.04 14 7 N -0.63 -35.84 9.84 -323.94 -3.19 -39.03 14 8 C 0.47 30.76 7.46 85.02 0.63 31.40 14 9 O -0.61 -42.18 12.13 -6.34 -0.08 -42.25 14 10 C -0.52 -32.60 9.38 23.39 0.22 -32.38 14 11 H 0.08 4.60 7.85 -2.91 -0.02 4.58 14 12 C 0.02 1.30 5.49 85.31 0.47 1.77 14 13 N -0.79 -48.90 11.71 21.84 0.26 -48.65 14 14 Si 1.01 42.41 29.56 68.60 2.03 44.44 14 15 H -0.26 -10.20 7.11 99.48 0.71 -9.49 14 16 H -0.26 -10.26 7.11 99.48 0.71 -9.55 14 17 H -0.25 -10.14 7.11 99.48 0.71 -9.43 14 18 H 0.08 1.69 8.14 -2.39 -0.02 1.68 14 19 H 0.13 1.71 8.09 -2.39 -0.02 1.69 14 20 H 0.07 2.01 7.73 -2.38 -0.02 1.99 14 21 H 0.24 2.54 8.06 -2.91 -0.02 2.51 14 22 H 0.20 4.11 8.06 -2.91 -0.02 4.08 14 23 H 0.28 15.55 8.29 -92.71 -0.77 14.78 14 Total: -1.00 -85.78 226.25 3.15 -82.63 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: 1.23 Total: 2.83 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: 5.70 Total: 14.21 kcal Atomic # 7 Polarization: -100.84 SS G_CDS: -4.60 Total: -105.43 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -0.08 Total: -42.25 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: 4.71 SS G_CDS: -1.12 Total: 3.59 kcal Total: -85.78 3.15 -82.63 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308093867.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.638 kcal (2) G-P(sol) polarization free energy of solvation -85.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds