Wall clock time and date at job start Sun Mar 29 2020 21:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46897 * 111.00216 * 2 1 4 4 C 1.52998 * 109.47272 * 66.04219 * 3 2 1 5 5 C 1.53001 * 109.47346 * 179.97438 * 4 3 2 6 6 C 1.50694 * 109.47305 * 180.02562 * 5 4 3 7 7 H 1.07998 * 120.00153 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00036 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00129 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00070 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47133 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47311 * 120.00040 * 10 8 6 13 13 H 1.48507 * 109.47168 * 239.99915 * 10 8 6 14 14 C 1.46906 * 111.00212 * 236.04161 * 2 1 3 15 15 C 1.52999 * 109.46904 * 293.95822 * 14 2 1 16 16 C 1.53006 * 109.46626 * 179.97438 * 15 14 2 17 17 C 1.53003 * 117.49663 * 243.74292 * 16 15 14 18 18 C 1.53002 * 117.49643 * 175.08260 * 16 15 14 19 19 H 1.09005 * 109.47010 * 183.95794 * 1 2 3 20 20 H 1.08998 * 109.47527 * 303.95325 * 1 2 3 21 21 H 1.09001 * 109.47410 * 63.95283 * 1 2 3 22 22 H 1.09004 * 109.47337 * 186.04726 * 3 2 1 23 23 H 1.09001 * 109.46986 * 306.04584 * 3 2 1 24 24 H 1.08996 * 109.47594 * 300.00718 * 4 3 2 25 25 H 1.09001 * 109.46817 * 60.00261 * 4 3 2 26 26 H 1.08996 * 109.47398 * 300.00884 * 5 4 3 27 27 H 1.09011 * 109.46438 * 60.00093 * 5 4 3 28 28 H 0.96993 * 120.00265 * 180.02562 * 9 8 6 29 29 H 1.08993 * 109.47034 * 173.95131 * 14 2 1 30 30 H 1.09000 * 109.46693 * 53.95472 * 14 2 1 31 31 H 1.08993 * 109.47839 * 59.99803 * 15 14 2 32 32 H 1.09000 * 109.47160 * 299.99365 * 15 14 2 33 33 H 1.09002 * 115.55153 * 29.41498 * 16 15 14 34 34 H 1.08998 * 117.49856 * 0.02562 * 17 16 15 35 35 H 1.09000 * 117.49861 * 145.02337 * 17 16 15 36 36 H 1.08993 * 117.50251 * 214.97577 * 18 16 15 37 37 H 1.09003 * 117.49715 * 0.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 1.3182 5 6 2.1803 3.4856 1.3185 6 6 1.8223 4.1612 2.6171 7 1 1.2599 3.6254 3.3674 8 6 2.2127 5.4633 2.8473 9 7 2.8972 6.1160 1.9334 10 14 1.7695 6.3004 4.4574 11 1 1.0020 5.3579 5.3105 12 1 3.0117 6.7074 5.1620 13 1 0.9420 7.5018 4.1793 14 6 1.9954 -0.7661 -1.1376 15 6 1.6314 -2.2427 -0.9702 16 6 2.1792 -3.0404 -2.1553 17 6 1.1660 -3.7253 -3.0747 18 6 2.0190 -4.5616 -2.1175 19 1 -0.3633 -1.0253 0.0709 20 1 -0.3634 0.5739 0.8524 21 1 -0.3634 0.4513 -0.9233 22 1 3.0797 1.3444 -0.1083 23 1 1.5611 1.9273 -0.8309 24 1 0.5471 2.0845 1.4265 25 1 2.0657 1.5016 2.1491 26 1 3.2645 3.4582 1.2104 27 1 1.7463 4.0417 0.4874 28 1 3.1721 7.0319 2.0956 29 1 3.0796 -0.6611 -1.1756 30 1 1.5611 -0.3874 -2.0628 31 1 0.5472 -2.3476 -0.9322 32 1 2.0657 -2.6214 -0.0450 33 1 3.0843 -2.6409 -2.6128 34 1 0.1091 -3.6072 -2.8355 35 1 1.4047 -3.7767 -4.1370 36 1 2.8184 -5.1628 -2.5505 37 1 1.5229 -4.9939 -1.2485 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308100133.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:05 Heat of formation + Delta-G solvation = 3.124258 kcal Electronic energy + Delta-G solvation = -13612.707846 eV Core-core repulsion = 11389.956309 eV Total energy + Delta-G solvation = -2222.751537 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.33188 -36.92456 -33.72230 -31.74223 -29.79787 -27.08306 -25.58391 -23.02639 -22.54598 -20.96539 -20.42419 -19.78046 -16.28810 -15.85404 -15.42986 -15.26947 -14.41837 -14.13185 -13.80337 -13.77454 -12.94354 -12.24606 -12.09488 -11.76354 -11.70203 -11.51240 -11.31702 -11.19485 -10.95369 -10.78459 -10.53665 -10.49194 -10.25750 -9.97425 -9.55910 -9.27795 -8.99739 -8.30999 -8.00953 -5.96230 -3.98019 3.33657 3.40878 3.45663 3.62359 4.13444 4.49970 4.66140 4.75736 4.78566 5.11014 5.30664 5.39560 5.43603 5.47866 5.52744 5.63912 5.68377 5.73435 5.88779 5.91393 5.94475 6.01850 6.13308 6.20476 6.29778 6.38413 6.75980 6.83402 7.17563 7.42501 7.46053 7.73275 7.88425 8.04801 8.48444 9.09570 9.65824 11.15339 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.089119 B = 0.004205 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 314.109664 B = 6657.695832 C = 6767.698303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.544 5.544 3 C 0.056 3.944 4 C -0.105 4.105 5 C 0.021 3.979 6 C -0.517 4.517 7 H 0.056 0.944 8 C 0.055 3.945 9 N -0.897 5.897 10 Si 0.892 3.108 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.285 1.285 14 C 0.057 3.943 15 C -0.085 4.085 16 C -0.149 4.149 17 C -0.184 4.184 18 C -0.182 4.182 19 H 0.061 0.939 20 H 0.074 0.926 21 H 0.020 0.980 22 H 0.068 0.932 23 H 0.027 0.973 24 H 0.047 0.953 25 H 0.055 0.945 26 H 0.016 0.984 27 H 0.013 0.987 28 H 0.259 0.741 29 H 0.072 0.928 30 H 0.029 0.971 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.912 -17.089 -8.208 19.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.268 5.268 3 C -0.071 4.071 4 C -0.143 4.143 5 C -0.017 4.017 6 C -0.555 4.555 7 H 0.074 0.926 8 C -0.146 4.146 9 N -0.537 5.537 10 Si 0.720 3.280 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.211 1.211 14 C -0.071 4.071 15 C -0.123 4.123 16 C -0.168 4.168 17 C -0.221 4.221 18 C -0.219 4.219 19 H 0.080 0.920 20 H 0.093 0.907 21 H 0.039 0.961 22 H 0.087 0.913 23 H 0.046 0.954 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.034 0.966 27 H 0.031 0.969 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.121 0.879 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.676 -17.144 -7.809 19.028 hybrid contribution -0.448 0.980 0.007 1.078 sum -3.125 -16.164 -7.802 18.218 Atomic orbital electron populations 1.22441 0.88087 1.01324 1.00835 1.62057 1.07644 1.15134 1.41992 1.22302 0.99491 0.86273 0.99070 1.21656 1.00026 0.98144 0.94466 1.19085 0.96245 0.89396 0.96955 1.21301 1.34575 0.97572 1.02053 0.92620 1.25037 0.95282 0.97529 0.96748 1.69979 1.38531 1.11224 1.33940 0.86543 0.78158 0.79447 0.83899 1.19716 1.21027 1.21083 1.22089 1.00116 0.93121 0.91795 1.21190 1.00440 0.93987 0.96691 1.22332 1.00734 0.93950 0.99765 1.23044 0.97121 1.05158 0.96758 1.22960 1.03077 0.93760 1.02109 0.92036 0.90704 0.96134 0.91326 0.95437 0.93447 0.92629 0.96612 0.96854 0.93126 0.90973 0.95234 0.91899 0.90750 0.87852 0.88931 0.89114 0.89013 0.88842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.13 60.06 0.55 0.85 16 2 N -0.54 -8.56 4.76 -242.92 -1.16 -9.71 16 3 C 0.06 1.02 4.96 -3.83 -0.02 1.00 16 4 C -0.10 -2.26 5.08 -26.73 -0.14 -2.40 16 5 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 6 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 7 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 8 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 10 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 14 C 0.06 0.74 4.92 -3.82 -0.02 0.73 16 15 C -0.09 -0.94 5.42 -26.73 -0.14 -1.09 16 16 C -0.15 -1.43 5.73 -90.61 -0.52 -1.95 16 17 C -0.18 -1.59 10.18 -26.69 -0.27 -1.86 16 18 C -0.18 -1.54 10.26 -26.69 -0.27 -1.82 16 19 H 0.06 0.75 6.47 -51.93 -0.34 0.42 16 20 H 0.07 1.14 6.30 -51.93 -0.33 0.81 16 21 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 22 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 23 H 0.03 0.51 8.12 -51.93 -0.42 0.08 16 24 H 0.05 1.00 6.47 -51.93 -0.34 0.67 16 25 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.01 0.37 8.14 -51.92 -0.42 -0.05 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.07 0.93 7.93 -51.93 -0.41 0.52 16 30 H 0.03 0.39 8.12 -51.93 -0.42 -0.04 16 31 H 0.06 0.68 6.28 -51.93 -0.33 0.36 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.10 0.97 8.08 -51.93 -0.42 0.55 16 34 H 0.09 0.78 8.03 -51.93 -0.42 0.37 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 299.05 15.07 4.51 4.51 Total: -1.00 -30.23 299.05 -9.07 -39.30 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -6.75 Total: -4.44 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: -1.39 Total: -19.93 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: -0.42 Total: -36.43 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.23 -9.07 -39.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308100133.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.423 kcal (2) G-P(sol) polarization free energy of solvation -30.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds