Wall clock time and date at job start Sun Mar 29 2020 21:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46897 * 111.00216 * 2 1 4 4 C 1.52998 * 109.47272 * 66.04219 * 3 2 1 5 5 C 1.53001 * 109.47346 * 179.97438 * 4 3 2 6 6 C 1.50694 * 109.47305 * 180.02562 * 5 4 3 7 7 H 1.07998 * 120.00153 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00036 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00129 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00070 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47133 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47311 * 120.00040 * 10 8 6 13 13 H 1.48507 * 109.47168 * 239.99915 * 10 8 6 14 14 C 1.46906 * 111.00212 * 236.04161 * 2 1 3 15 15 C 1.52999 * 109.46904 * 293.95822 * 14 2 1 16 16 C 1.53006 * 109.46626 * 179.97438 * 15 14 2 17 17 C 1.53003 * 117.49663 * 243.74292 * 16 15 14 18 18 C 1.53002 * 117.49643 * 175.08260 * 16 15 14 19 19 H 1.09005 * 109.47010 * 183.95794 * 1 2 3 20 20 H 1.08998 * 109.47527 * 303.95325 * 1 2 3 21 21 H 1.09001 * 109.47410 * 63.95283 * 1 2 3 22 22 H 1.09004 * 109.47337 * 186.04726 * 3 2 1 23 23 H 1.09001 * 109.46986 * 306.04584 * 3 2 1 24 24 H 1.08996 * 109.47594 * 300.00718 * 4 3 2 25 25 H 1.09001 * 109.46817 * 60.00261 * 4 3 2 26 26 H 1.08996 * 109.47398 * 300.00884 * 5 4 3 27 27 H 1.09011 * 109.46438 * 60.00093 * 5 4 3 28 28 H 0.96993 * 120.00265 * 180.02562 * 9 8 6 29 29 H 1.08993 * 109.47034 * 173.95131 * 14 2 1 30 30 H 1.09000 * 109.46693 * 53.95472 * 14 2 1 31 31 H 1.08993 * 109.47839 * 59.99803 * 15 14 2 32 32 H 1.09000 * 109.47160 * 299.99365 * 15 14 2 33 33 H 1.09002 * 115.55153 * 29.41498 * 16 15 14 34 34 H 1.08998 * 117.49856 * 0.02562 * 17 16 15 35 35 H 1.09000 * 117.49861 * 145.02337 * 17 16 15 36 36 H 1.08993 * 117.50251 * 214.97577 * 18 16 15 37 37 H 1.09003 * 117.49715 * 0.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 1.3182 5 6 2.1803 3.4856 1.3185 6 6 1.8223 4.1612 2.6171 7 1 1.2599 3.6254 3.3674 8 6 2.2127 5.4633 2.8473 9 7 2.8972 6.1160 1.9334 10 14 1.7695 6.3004 4.4574 11 1 1.0020 5.3579 5.3105 12 1 3.0117 6.7074 5.1620 13 1 0.9420 7.5018 4.1793 14 6 1.9954 -0.7661 -1.1376 15 6 1.6314 -2.2427 -0.9702 16 6 2.1792 -3.0404 -2.1553 17 6 1.1660 -3.7253 -3.0747 18 6 2.0190 -4.5616 -2.1175 19 1 -0.3633 -1.0253 0.0709 20 1 -0.3634 0.5739 0.8524 21 1 -0.3634 0.4513 -0.9233 22 1 3.0797 1.3444 -0.1083 23 1 1.5611 1.9273 -0.8309 24 1 0.5471 2.0845 1.4265 25 1 2.0657 1.5016 2.1491 26 1 3.2645 3.4582 1.2104 27 1 1.7463 4.0417 0.4874 28 1 3.1721 7.0319 2.0956 29 1 3.0796 -0.6611 -1.1756 30 1 1.5611 -0.3874 -2.0628 31 1 0.5472 -2.3476 -0.9322 32 1 2.0657 -2.6214 -0.0450 33 1 3.0843 -2.6409 -2.6128 34 1 0.1091 -3.6072 -2.8355 35 1 1.4047 -3.7767 -4.1370 36 1 2.8184 -5.1628 -2.5505 37 1 1.5229 -4.9939 -1.2485 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308100133.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:05 Heat of formation + Delta-G solvation = -14.197258 kcal Electronic energy + Delta-G solvation = -13613.458963 eV Core-core repulsion = 11389.956309 eV Total energy + Delta-G solvation = -2223.502654 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.36694 -37.94465 -35.69639 -33.55611 -31.07828 -28.67032 -27.09161 -24.66768 -23.21583 -22.35201 -21.50552 -21.18827 -18.47610 -16.79550 -16.75406 -16.43590 -16.27807 -15.49238 -15.04883 -14.77054 -14.31155 -14.15006 -13.61355 -13.13076 -13.02888 -12.72757 -12.55524 -12.48781 -12.35256 -12.25683 -12.14911 -11.87513 -11.43315 -11.37860 -11.21793 -10.90756 -10.71932 -10.55490 -9.26901 -8.20264 -6.31373 1.40184 1.40591 1.54410 2.41131 2.88636 3.02448 3.12734 3.81458 4.03337 4.08429 4.13730 4.20856 4.27264 4.44269 4.55280 4.64975 4.69595 4.70224 4.74808 4.81701 4.94363 5.03133 5.05325 5.08919 5.13166 5.20539 5.27510 5.30317 5.44136 5.52698 5.74116 5.85792 6.09372 6.20498 6.28142 6.85585 7.37904 8.92002 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.089119 B = 0.004205 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 314.109664 B = 6657.695832 C = 6767.698303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.552 5.552 3 C 0.066 3.934 4 C -0.090 4.090 5 C 0.025 3.975 6 C -0.542 4.542 7 H 0.059 0.941 8 C -0.002 4.002 9 N -0.934 5.934 10 Si 0.967 3.033 11 H -0.262 1.262 12 H -0.277 1.277 13 H -0.277 1.277 14 C 0.058 3.942 15 C -0.076 4.076 16 C -0.162 4.162 17 C -0.182 4.182 18 C -0.177 4.177 19 H 0.085 0.915 20 H 0.062 0.938 21 H 0.023 0.977 22 H 0.066 0.934 23 H 0.023 0.977 24 H 0.051 0.949 25 H 0.051 0.949 26 H -0.008 1.008 27 H -0.010 1.010 28 H 0.264 0.736 29 H 0.071 0.929 30 H 0.032 0.968 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.630 -18.206 -7.840 20.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.276 5.276 3 C -0.061 4.061 4 C -0.128 4.128 5 C -0.013 4.013 6 C -0.580 4.580 7 H 0.077 0.923 8 C -0.200 4.200 9 N -0.575 5.575 10 Si 0.791 3.209 11 H -0.186 1.186 12 H -0.203 1.203 13 H -0.203 1.203 14 C -0.070 4.070 15 C -0.113 4.113 16 C -0.181 4.181 17 C -0.218 4.218 18 C -0.214 4.214 19 H 0.103 0.897 20 H 0.081 0.919 21 H 0.042 0.958 22 H 0.085 0.915 23 H 0.041 0.959 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.010 0.990 27 H 0.008 0.992 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.050 0.950 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.122 0.878 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.400 -18.285 -7.448 20.034 hybrid contribution -0.215 1.304 -0.152 1.331 sum -3.615 -16.980 -7.600 18.952 Atomic orbital electron populations 1.22480 0.87086 1.02672 1.00443 1.62016 1.08640 1.13349 1.43581 1.22034 0.99482 0.87773 0.96848 1.21404 0.99806 0.95266 0.96283 1.18985 0.94693 0.92187 0.95419 1.21721 1.34924 0.98359 1.03008 0.92277 1.26011 0.94933 0.98285 1.00748 1.70106 1.39406 1.11770 1.36193 0.85368 0.78166 0.78308 0.79020 1.18591 1.20265 1.20276 1.22150 1.00000 0.94036 0.90805 1.21076 1.00630 0.92494 0.97128 1.22280 1.01273 0.94720 0.99777 1.23121 0.97043 1.04485 0.97199 1.23041 1.03232 0.92941 1.02185 0.89691 0.91909 0.95810 0.91514 0.95878 0.93071 0.93023 0.98978 0.99183 0.92747 0.91089 0.95015 0.91520 0.91414 0.87811 0.88726 0.88258 0.88000 0.88564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.13 127.69 1.17 1.74 16 2 N -0.55 -16.79 4.76 -922.47 -4.39 -21.18 16 3 C 0.07 2.42 4.96 86.30 0.43 2.85 16 4 C -0.09 -3.90 5.08 30.59 0.16 -3.74 16 5 C 0.02 1.36 4.97 29.85 0.15 1.50 16 6 C -0.54 -31.82 9.11 25.60 0.23 -31.58 16 7 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 8 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 9 N -0.93 -57.92 13.29 21.45 0.28 -57.64 16 10 Si 0.97 45.06 29.54 68.60 2.03 47.08 16 11 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 13 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 14 C 0.06 1.44 4.92 86.30 0.42 1.86 16 15 C -0.08 -1.54 5.42 30.60 0.17 -1.37 16 16 C -0.16 -2.81 5.73 -10.79 -0.06 -2.88 16 17 C -0.18 -2.73 10.18 30.62 0.31 -2.42 16 18 C -0.18 -2.61 10.26 30.62 0.31 -2.30 16 19 H 0.08 1.89 6.47 -2.38 -0.02 1.88 16 20 H 0.06 1.84 6.30 -2.39 -0.02 1.83 16 21 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 22 H 0.07 2.44 7.93 -2.38 -0.02 2.42 16 23 H 0.02 0.85 8.12 -2.39 -0.02 0.84 16 24 H 0.05 2.17 6.47 -2.39 -0.02 2.15 16 25 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 26 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 27 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 28 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 29 H 0.07 1.77 7.93 -2.39 -0.02 1.76 16 30 H 0.03 0.78 8.12 -2.39 -0.02 0.76 16 31 H 0.07 1.30 6.28 -2.39 -0.02 1.28 16 32 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.10 1.79 8.08 -2.39 -0.02 1.77 16 34 H 0.09 1.39 8.03 -2.39 -0.02 1.37 16 35 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -64.04 299.05 2.66 -61.38 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: 1.00 Total: 6.38 kcal Atomic # 6 Polarization: -39.77 SS G_CDS: 3.75 Total: -36.02 kcal Atomic # 7 Polarization: -74.72 SS G_CDS: -4.11 Total: -78.82 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -64.04 2.66 -61.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308100133.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.180 kcal (2) G-P(sol) polarization free energy of solvation -64.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds