Wall clock time and date at job start Sun Mar 29 2020 21:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.87502 * 2 1 4 4 C 1.55142 * 110.99163 * 236.15693 * 2 1 3 5 5 C 1.54319 * 103.02055 * 206.21589 * 4 2 1 6 6 N 1.47445 * 107.23272 * 22.28397 * 5 4 2 7 7 C 1.46896 * 110.99888 * 123.25751 * 6 5 4 8 8 C 1.52997 * 109.47114 * 69.87222 * 7 6 5 9 9 C 1.53006 * 109.47127 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47184 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99819 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00046 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00192 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99979 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47261 * 60.00310 * 14 12 10 17 17 H 1.48500 * 109.47454 * 300.00304 * 14 12 10 18 18 C 1.47840 * 108.56580 * 0.98802 * 6 5 4 19 19 H 1.09011 * 110.37497 * 94.73578 * 18 6 5 20 20 C 1.53002 * 110.37288 * 217.07273 * 18 6 5 21 21 H 1.09003 * 109.47045 * 182.39159 * 1 2 3 22 22 H 1.08999 * 109.47191 * 302.39010 * 1 2 3 23 23 H 1.09002 * 109.47302 * 62.38986 * 1 2 3 24 24 H 1.09007 * 110.70660 * 87.82868 * 4 2 1 25 25 H 1.09000 * 110.70614 * 324.60203 * 4 2 1 26 26 H 1.08996 * 109.88582 * 262.87541 * 5 4 2 27 27 H 1.09004 * 109.88528 * 141.69155 * 5 4 2 28 28 H 1.09001 * 109.47271 * 309.87491 * 7 6 5 29 29 H 1.09004 * 109.47041 * 189.87338 * 7 6 5 30 30 H 1.09001 * 109.46832 * 59.99999 * 8 7 6 31 31 H 1.09001 * 109.47502 * 299.99521 * 8 7 6 32 32 H 1.09001 * 109.47002 * 60.00426 * 9 8 7 33 33 H 1.08993 * 109.46955 * 299.99989 * 9 8 7 34 34 H 0.97001 * 119.99934 * 359.97438 * 13 12 10 35 35 H 1.09005 * 109.46691 * 58.55320 * 20 18 6 36 36 H 1.09000 * 109.46794 * 178.54704 * 20 18 6 37 37 H 1.08998 * 109.47303 * 298.54832 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9184 1.0185 0.0000 4 6 2.0858 -0.8067 -1.2030 5 6 3.4696 -1.2700 -0.7014 6 7 3.4322 -1.2412 0.7723 7 6 3.7630 -2.5579 1.3331 8 6 5.2448 -2.8557 1.0958 9 6 5.5895 -4.2270 1.6805 10 6 7.0489 -4.5206 1.4462 11 1 7.6687 -3.8009 0.9320 12 6 7.5931 -5.7075 1.8891 13 7 6.8385 -6.5836 2.5156 14 14 9.4023 -6.0711 1.5993 15 1 9.7368 -7.4021 2.1667 16 1 10.2287 -5.0290 2.2598 17 1 9.6796 -6.0716 0.1404 18 6 2.0858 -0.8059 1.2005 19 1 1.4536 -1.6707 1.4023 20 6 2.1834 0.0850 2.4406 21 1 -0.3633 -1.0268 0.0429 22 1 -0.3633 0.5505 0.8678 23 1 -0.3634 0.4763 -0.9106 24 1 2.1878 -0.1685 -2.0809 25 1 1.4478 -1.6634 -1.4203 26 1 4.2420 -0.5929 -1.0661 27 1 3.6690 -2.2842 -1.0476 28 1 3.1565 -3.3225 0.8475 29 1 3.5592 -2.5583 2.4039 30 1 5.8513 -2.0912 1.5813 31 1 5.4486 -2.8554 0.0250 32 1 4.9830 -4.9917 1.1953 33 1 5.3859 -4.2269 2.7512 34 1 5.8991 -6.3946 2.6665 35 1 2.8056 0.9517 2.2173 36 1 1.1861 0.4181 2.7280 37 1 2.6279 -0.4801 3.2599 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308100199.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:21 Heat of formation + Delta-G solvation = -49.749984 kcal Electronic energy + Delta-G solvation = -14229.770293 eV Core-core repulsion = 12004.725957 eV Total energy + Delta-G solvation = -2225.044336 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.48210 -36.67805 -34.82842 -32.45551 -32.31383 -29.16383 -27.09836 -25.16027 -24.62769 -22.67562 -21.03952 -20.81312 -18.94032 -17.22268 -16.38524 -15.88399 -15.64799 -15.40980 -14.96439 -14.67962 -14.33085 -13.96527 -13.71052 -13.34966 -13.20096 -12.96542 -12.63709 -12.51576 -12.20907 -12.15366 -11.99443 -11.92265 -11.68315 -11.57111 -11.50147 -11.27272 -10.67041 -10.56256 -9.32182 -8.71738 -6.41945 1.51465 1.60537 1.80245 2.55696 2.93068 3.13584 3.56706 3.66338 3.93771 4.08556 4.21757 4.22920 4.40454 4.48025 4.55984 4.58549 4.66825 4.71976 4.79050 4.82290 4.86893 4.93518 4.98556 5.04508 5.09691 5.13526 5.25166 5.38558 5.39939 5.45917 5.48946 5.96107 6.06797 6.13537 6.16734 6.55420 7.40422 8.69024 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.061955 B = 0.005443 C = 0.005291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.834162 B = 5143.152061 C = 5291.046311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 H 0.088 0.912 4 C -0.132 4.132 5 C 0.036 3.964 6 N -0.537 5.537 7 C 0.067 3.933 8 C -0.080 4.080 9 C 0.010 3.990 10 C -0.620 4.620 11 H 0.049 0.951 12 C -0.040 4.040 13 N -0.937 5.937 14 Si 1.120 2.880 15 H -0.281 1.281 16 H -0.268 1.268 17 H -0.268 1.268 18 C 0.063 3.937 19 H 0.045 0.955 20 C -0.129 4.129 21 H 0.049 0.951 22 H 0.066 0.934 23 H 0.070 0.930 24 H 0.091 0.909 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.041 0.959 28 H 0.023 0.977 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.046 0.954 32 H -0.014 1.014 33 H -0.012 1.012 34 H 0.254 0.746 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.951 14.211 -5.765 19.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.109 4.109 3 H 0.107 0.893 4 C -0.170 4.170 5 C -0.092 4.092 6 N -0.261 5.261 7 C -0.062 4.062 8 C -0.118 4.118 9 C -0.028 4.028 10 C -0.658 4.658 11 H 0.068 0.932 12 C -0.237 4.237 13 N -0.574 5.574 14 Si 0.940 3.060 15 H -0.206 1.206 16 H -0.193 1.193 17 H -0.193 1.193 18 C -0.045 4.045 19 H 0.063 0.937 20 C -0.187 4.187 21 H 0.068 0.932 22 H 0.085 0.915 23 H 0.089 0.911 24 H 0.110 0.890 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.059 0.941 28 H 0.041 0.959 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.004 0.996 33 H 0.007 0.993 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -10.413 13.442 -5.329 17.819 hybrid contribution -1.733 0.084 -0.292 1.760 sum -12.146 13.526 -5.621 19.028 Atomic orbital electron populations 1.21702 0.92881 1.01915 1.02891 1.22321 0.96680 0.99215 0.92687 0.89342 1.22851 0.94978 1.00188 0.98991 1.22870 0.98695 1.00314 0.87306 1.63518 1.28216 1.25965 1.08408 1.22131 0.95889 0.89028 0.99122 1.21244 0.94647 0.96310 0.99611 1.19149 0.95850 0.93609 0.94169 1.22493 0.96293 1.06046 1.40969 0.93249 1.27529 1.10577 0.92754 0.92823 1.70921 1.07940 1.37631 1.40955 0.82916 0.69120 0.76503 0.77449 1.20648 1.19336 1.19324 1.22769 0.87953 0.97100 0.96685 0.93704 1.21668 1.02111 0.99163 0.95770 0.93191 0.91494 0.91105 0.89020 0.91566 0.90625 0.94072 0.95924 0.91902 0.93221 0.93484 0.99560 0.99338 0.93684 0.92170 0.90405 0.94152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.30 71.98 0.67 -1.38 16 2 C -0.09 -1.76 3.05 -9.41 -0.03 -1.78 16 3 H 0.09 1.66 8.06 -2.39 -0.02 1.64 16 4 C -0.13 -2.75 6.41 31.78 0.20 -2.55 16 5 C 0.04 1.01 6.21 86.65 0.54 1.54 16 6 N -0.54 -16.85 4.81 -860.65 -4.14 -20.99 16 7 C 0.07 2.50 4.54 86.30 0.39 2.89 16 8 C -0.08 -3.60 5.18 30.60 0.16 -3.44 16 9 C 0.01 0.54 4.28 29.85 0.13 0.67 16 10 C -0.62 -37.25 9.11 25.60 0.23 -37.01 16 11 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 12 C -0.04 -2.40 5.46 84.65 0.46 -1.93 16 13 N -0.94 -60.05 13.65 21.45 0.29 -59.75 16 14 Si 1.12 51.64 29.90 68.60 2.05 53.69 16 15 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 16 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 17 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 18 C 0.06 1.58 2.48 45.39 0.11 1.69 16 19 H 0.04 1.19 7.68 -2.38 -0.02 1.17 16 20 C -0.13 -2.93 9.59 71.98 0.69 -2.24 16 21 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16 22 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 23 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 25 H 0.07 1.38 8.04 -2.39 -0.02 1.36 16 26 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.04 1.28 6.91 -2.38 -0.02 1.27 16 28 H 0.02 0.86 7.96 -2.39 -0.02 0.84 16 29 H 0.06 2.37 8.07 -2.38 -0.02 2.36 16 30 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.05 2.09 7.14 -2.39 -0.02 2.08 16 32 H -0.01 -0.81 8.01 -2.39 -0.02 -0.83 16 33 H -0.01 -0.68 8.01 -2.39 -0.02 -0.70 16 34 H 0.25 16.50 7.22 -92.71 -0.67 15.83 16 35 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.04 1.02 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -67.14 293.37 2.85 -64.29 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: 1.09 Total: 6.31 kcal Atomic # 6 Polarization: -47.11 SS G_CDS: 3.56 Total: -43.55 kcal Atomic # 7 Polarization: -76.90 SS G_CDS: -3.85 Total: -80.75 kcal Atomic # 14 Polarization: 51.64 SS G_CDS: 2.05 Total: 53.69 kcal Total: -67.14 2.85 -64.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308100199.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.544 kcal (2) G-P(sol) polarization free energy of solvation -67.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds