Wall clock time and date at job start Sun Mar 29 2020 21:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 110.33340 * 2 1 4 4 C 1.55378 * 110.34479 * 237.66880 * 2 1 3 5 5 H 1.08997 * 111.01380 * 322.09260 * 4 2 1 6 6 C 1.53003 * 111.17430 * 86.06111 * 4 2 1 7 7 C 1.55152 * 101.43826 * 204.10918 * 4 2 1 8 8 C 1.54314 * 103.17197 * 35.64709 * 7 4 2 9 9 N 1.47442 * 107.23652 * 337.62991 * 8 7 4 10 10 C 1.46904 * 110.99802 * 236.74135 * 9 8 7 11 11 C 1.53001 * 109.47254 * 176.50129 * 10 9 8 12 12 C 1.52993 * 109.47372 * 174.31597 * 11 10 9 13 13 C 1.50705 * 109.47220 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99797 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99776 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99819 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 120.00220 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.47255 * 90.00160 * 17 15 13 19 19 H 1.48508 * 109.46809 * 209.99966 * 17 15 13 20 20 H 1.48493 * 109.47048 * 329.99740 * 17 15 13 21 21 H 1.08999 * 109.46955 * 299.19305 * 1 2 3 22 22 H 1.08997 * 109.47741 * 59.19976 * 1 2 3 23 23 H 1.09006 * 109.46864 * 179.20173 * 1 2 3 24 24 H 1.09000 * 109.47033 * 173.56225 * 6 4 2 25 25 H 1.09000 * 109.46458 * 293.56397 * 6 4 2 26 26 H 1.08996 * 109.47270 * 53.56164 * 6 4 2 27 27 H 1.09000 * 110.70809 * 277.17680 * 7 4 2 28 28 H 1.08997 * 110.70263 * 154.11560 * 7 4 2 29 29 H 1.09003 * 109.88839 * 97.03516 * 8 7 4 30 30 H 1.09005 * 109.89209 * 218.22111 * 8 7 4 31 31 H 1.08996 * 109.47194 * 296.50112 * 10 9 8 32 32 H 1.09003 * 109.47277 * 56.50633 * 10 9 8 33 33 H 1.09001 * 109.47093 * 294.31361 * 11 10 9 34 34 H 1.09002 * 109.46606 * 54.31101 * 11 10 9 35 35 H 1.09001 * 109.46819 * 299.99932 * 12 11 10 36 36 H 1.08994 * 109.47783 * 59.99545 * 12 11 10 37 37 H 0.97006 * 120.00231 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0220 0.0000 4 6 2.0702 -0.7791 -1.2310 5 1 1.4534 -1.6526 -1.4422 6 6 2.1704 0.1282 -2.4589 7 6 3.4786 -1.2002 -0.7348 8 6 3.2536 -1.4799 0.7660 9 7 2.0448 -0.7397 1.1719 10 6 2.3359 0.1739 2.2849 11 6 1.0827 0.9854 2.6197 12 6 1.3420 1.8330 3.8667 13 6 0.1074 2.6317 4.1969 14 1 -0.7738 2.5439 3.5788 15 6 0.1031 3.4746 5.2880 16 7 -0.9741 4.1720 5.5758 17 14 1.6271 3.6259 6.3575 18 1 2.4932 4.7128 5.8342 19 1 1.2242 3.9418 7.7515 20 1 2.3755 2.3435 6.3371 21 1 -0.3633 0.5012 0.8971 22 1 -0.3634 0.5262 -0.8827 23 1 -0.3633 -1.0276 -0.0143 24 1 2.6568 -0.4120 -3.2711 25 1 1.1703 0.4295 -2.7705 26 1 2.7555 1.0134 -2.2097 27 1 4.1941 -0.3896 -0.8727 28 1 3.8148 -2.1008 -1.2485 29 1 3.1057 -2.5479 0.9261 30 1 4.1119 -1.1320 1.3409 31 1 2.6394 -0.4028 3.1585 32 1 3.1410 0.8506 1.9984 33 1 0.8375 1.6377 1.7816 34 1 0.2503 0.3072 2.8079 35 1 1.5872 1.1806 4.7048 36 1 2.1744 2.5110 3.6786 37 1 -0.9774 4.7647 6.3437 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308100205.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:24 Heat of formation + Delta-G solvation = -19.959386 kcal Electronic energy + Delta-G solvation = -14429.662362 eV Core-core repulsion = 12205.909843 eV Total energy + Delta-G solvation = -2223.752519 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.38208 -34.73270 -32.84883 -31.69152 -30.66979 -28.15411 -26.00175 -24.14156 -22.43034 -20.59829 -20.03538 -19.60792 -16.71178 -15.69162 -15.21766 -14.75111 -14.08831 -13.94349 -13.56920 -13.09528 -13.02942 -12.52446 -12.19493 -12.15432 -11.99249 -11.56094 -11.35580 -11.17579 -10.93739 -10.77956 -10.63399 -10.56431 -10.15316 -9.83984 -9.64235 -9.51166 -9.11010 -8.50197 -8.04192 -6.00737 -3.98125 3.32668 3.39967 3.44347 4.16500 4.48407 4.58427 4.67616 4.91367 5.25007 5.33373 5.41724 5.46094 5.58270 5.63016 5.64262 5.72630 5.76120 5.83726 5.92129 5.99293 6.05889 6.13508 6.21612 6.28255 6.37988 6.54902 6.62070 6.69337 6.98529 7.29044 7.35134 7.42205 7.52341 7.84337 8.58787 9.04777 9.62204 11.12875 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.047694 B = 0.006581 C = 0.006124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.933423 B = 4253.349298 C = 4571.224185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.075 3.925 3 H 0.055 0.945 4 C -0.099 4.099 5 H 0.081 0.919 6 C -0.141 4.141 7 C -0.138 4.138 8 C 0.041 3.959 9 N -0.528 5.528 10 C 0.050 3.950 11 C -0.101 4.101 12 C -0.014 4.014 13 C -0.517 4.517 14 H 0.071 0.929 15 C 0.065 3.935 16 N -0.905 5.905 17 Si 0.880 3.120 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.266 1.266 21 H 0.074 0.926 22 H 0.051 0.949 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.026 0.974 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.015 0.985 36 H 0.008 0.992 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.446 -10.001 -13.103 18.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.033 4.033 3 H 0.073 0.927 4 C -0.118 4.118 5 H 0.100 0.900 6 C -0.198 4.198 7 C -0.177 4.177 8 C -0.087 4.087 9 N -0.252 5.252 10 C -0.078 4.078 11 C -0.139 4.139 12 C -0.052 4.052 13 C -0.555 4.555 14 H 0.090 0.910 15 C -0.136 4.136 16 N -0.544 5.544 17 Si 0.707 3.293 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.190 1.190 21 H 0.093 0.907 22 H 0.070 0.930 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.034 0.966 36 H 0.026 0.974 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.003 -10.222 -12.778 18.215 hybrid contribution 1.420 0.794 0.455 1.689 sum 9.423 -9.428 -12.323 18.153 Atomic orbital electron populations 1.21941 0.93888 1.02034 1.02371 1.22650 0.96325 0.95827 0.88469 0.92690 1.22435 0.96058 0.98674 0.94656 0.90023 1.21715 1.01900 0.99245 0.96973 1.22845 0.97232 1.01289 0.96310 1.22776 0.92034 0.99491 0.94357 1.63590 1.27900 1.26766 1.06932 1.22482 0.98377 0.93793 0.93153 1.21638 0.95685 0.97408 0.99160 1.19569 0.97315 0.94948 0.93372 1.21149 0.98902 1.23393 1.12055 0.91041 1.25035 0.95951 0.95258 0.97323 1.69921 1.28179 1.27918 1.28425 0.86776 0.83815 0.78855 0.79821 1.20412 1.21408 1.19036 0.90693 0.93043 0.92535 0.92747 0.92334 0.92726 0.91719 0.91231 0.90934 0.93015 0.91226 0.95572 0.92641 0.91773 0.96642 0.97389 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.17 37.16 0.34 -1.73 16 2 C 0.08 1.07 1.90 -65.93 -0.12 0.94 16 3 H 0.06 0.85 7.28 -51.93 -0.38 0.47 16 4 C -0.10 -1.13 3.07 -88.22 -0.27 -1.40 16 5 H 0.08 0.92 8.06 -51.93 -0.42 0.50 16 6 C -0.14 -1.38 9.31 37.16 0.35 -1.03 16 7 C -0.14 -1.49 6.40 -24.90 -0.16 -1.65 16 8 C 0.04 0.52 6.90 -2.84 -0.02 0.50 16 9 N -0.53 -8.10 4.94 -223.08 -1.10 -9.20 16 10 C 0.05 0.86 4.58 -3.82 -0.02 0.84 16 11 C -0.10 -2.08 3.65 -26.73 -0.10 -2.17 16 12 C -0.01 -0.35 4.04 -27.88 -0.11 -0.46 16 13 C -0.52 -15.07 9.66 -34.44 -0.33 -15.41 16 14 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 15 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 16 N -0.91 -28.39 13.96 55.43 0.77 -27.62 16 17 Si 0.88 22.17 27.47 -169.99 -4.67 17.50 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 21 H 0.07 1.24 5.18 -51.93 -0.27 0.97 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.55 8.11 -51.93 -0.42 0.13 16 27 H 0.06 0.69 8.04 -51.93 -0.42 0.27 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.64 7.58 -51.93 -0.39 0.25 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.03 0.45 8.13 -51.93 -0.42 0.02 16 33 H 0.05 1.14 6.07 -51.93 -0.32 0.82 16 34 H 0.06 1.36 7.57 -51.93 -0.39 0.97 16 35 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 36 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 37 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 285.36 15.07 4.30 4.30 Total: -1.00 -30.52 285.36 -7.98 -38.50 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -6.74 Total: -3.76 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -0.55 Total: -19.73 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: -0.33 Total: -36.82 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.50 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.52 -7.98 -38.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308100205.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.546 kcal (2) G-P(sol) polarization free energy of solvation -30.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds