Wall clock time and date at job start Sun Mar 29 2020 21:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 110.33340 * 2 1 4 4 C 1.55378 * 110.34479 * 237.66880 * 2 1 3 5 5 H 1.08997 * 111.01380 * 322.09260 * 4 2 1 6 6 C 1.53003 * 111.17430 * 86.06111 * 4 2 1 7 7 C 1.55152 * 101.43826 * 204.10918 * 4 2 1 8 8 C 1.54314 * 103.17197 * 35.64709 * 7 4 2 9 9 N 1.47442 * 107.23652 * 337.62991 * 8 7 4 10 10 C 1.46904 * 110.99802 * 236.74135 * 9 8 7 11 11 C 1.53001 * 109.47254 * 176.50129 * 10 9 8 12 12 C 1.52993 * 109.47372 * 174.31597 * 11 10 9 13 13 C 1.50705 * 109.47220 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99797 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99776 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99819 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 120.00220 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.47255 * 90.00160 * 17 15 13 19 19 H 1.48508 * 109.46809 * 209.99966 * 17 15 13 20 20 H 1.48493 * 109.47048 * 329.99740 * 17 15 13 21 21 H 1.08999 * 109.46955 * 299.19305 * 1 2 3 22 22 H 1.08997 * 109.47741 * 59.19976 * 1 2 3 23 23 H 1.09006 * 109.46864 * 179.20173 * 1 2 3 24 24 H 1.09000 * 109.47033 * 173.56225 * 6 4 2 25 25 H 1.09000 * 109.46458 * 293.56397 * 6 4 2 26 26 H 1.08996 * 109.47270 * 53.56164 * 6 4 2 27 27 H 1.09000 * 110.70809 * 277.17680 * 7 4 2 28 28 H 1.08997 * 110.70263 * 154.11560 * 7 4 2 29 29 H 1.09003 * 109.88839 * 97.03516 * 8 7 4 30 30 H 1.09005 * 109.89209 * 218.22111 * 8 7 4 31 31 H 1.08996 * 109.47194 * 296.50112 * 10 9 8 32 32 H 1.09003 * 109.47277 * 56.50633 * 10 9 8 33 33 H 1.09001 * 109.47093 * 294.31361 * 11 10 9 34 34 H 1.09002 * 109.46606 * 54.31101 * 11 10 9 35 35 H 1.09001 * 109.46819 * 299.99932 * 12 11 10 36 36 H 1.08994 * 109.47783 * 59.99545 * 12 11 10 37 37 H 0.97006 * 120.00231 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0220 0.0000 4 6 2.0702 -0.7791 -1.2310 5 1 1.4534 -1.6526 -1.4422 6 6 2.1704 0.1282 -2.4589 7 6 3.4786 -1.2002 -0.7348 8 6 3.2536 -1.4799 0.7660 9 7 2.0448 -0.7397 1.1719 10 6 2.3359 0.1739 2.2849 11 6 1.0827 0.9854 2.6197 12 6 1.3420 1.8330 3.8667 13 6 0.1074 2.6317 4.1969 14 1 -0.7738 2.5439 3.5788 15 6 0.1031 3.4746 5.2880 16 7 -0.9741 4.1720 5.5758 17 14 1.6271 3.6259 6.3575 18 1 2.4932 4.7128 5.8342 19 1 1.2242 3.9418 7.7515 20 1 2.3755 2.3435 6.3371 21 1 -0.3633 0.5012 0.8971 22 1 -0.3634 0.5262 -0.8827 23 1 -0.3633 -1.0276 -0.0143 24 1 2.6568 -0.4120 -3.2711 25 1 1.1703 0.4295 -2.7705 26 1 2.7555 1.0134 -2.2097 27 1 4.1941 -0.3896 -0.8727 28 1 3.8148 -2.1008 -1.2485 29 1 3.1057 -2.5479 0.9261 30 1 4.1119 -1.1320 1.3409 31 1 2.6394 -0.4028 3.1585 32 1 3.1410 0.8506 1.9984 33 1 0.8375 1.6377 1.7816 34 1 0.2503 0.3072 2.8079 35 1 1.5872 1.1806 4.7048 36 1 2.1744 2.5110 3.6786 37 1 -0.9774 4.7647 6.3437 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308100205.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:24 Heat of formation + Delta-G solvation = -39.230711 kcal Electronic energy + Delta-G solvation = -14430.498029 eV Core-core repulsion = 12205.909843 eV Total energy + Delta-G solvation = -2224.588186 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.47836 -36.34859 -34.62014 -33.09982 -32.05330 -29.46386 -27.56973 -25.15381 -24.12541 -21.95064 -21.37716 -20.78180 -18.90856 -16.76824 -16.59081 -16.21248 -15.98693 -14.94196 -14.88776 -14.59707 -14.29765 -14.03413 -13.59230 -13.43586 -13.23832 -13.02623 -12.77811 -12.45891 -12.31731 -12.04020 -11.83359 -11.79234 -11.55281 -11.49888 -11.36420 -11.23119 -11.06017 -10.77133 -9.21996 -8.30134 -6.34369 1.34348 1.36763 1.49135 2.35613 3.02422 3.04975 3.64489 3.71731 3.99724 4.18822 4.30363 4.30763 4.45003 4.55288 4.62172 4.66247 4.74801 4.77170 4.85588 4.86469 4.95737 4.98774 5.02802 5.11065 5.14786 5.23714 5.29471 5.43788 5.48916 5.53636 5.59319 5.65133 6.16482 6.19163 6.30631 6.73391 7.30134 8.86916 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.047694 B = 0.006581 C = 0.006124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.933423 B = 4253.349298 C = 4571.224185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.070 3.930 3 H 0.040 0.960 4 C -0.093 4.093 5 H 0.086 0.914 6 C -0.138 4.138 7 C -0.131 4.131 8 C 0.037 3.963 9 N -0.540 5.540 10 C 0.060 3.940 11 C -0.088 4.088 12 C -0.011 4.011 13 C -0.532 4.532 14 H 0.029 0.971 15 C 0.003 3.997 16 N -0.952 5.952 17 Si 0.953 3.047 18 H -0.266 1.266 19 H -0.282 1.282 20 H -0.247 1.247 21 H 0.043 0.957 22 H 0.065 0.935 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.031 0.969 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.020 0.980 36 H 0.016 0.984 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.894 -11.153 -13.807 20.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.038 4.038 3 H 0.058 0.942 4 C -0.112 4.112 5 H 0.104 0.896 6 C -0.196 4.196 7 C -0.169 4.169 8 C -0.090 4.090 9 N -0.265 5.265 10 C -0.068 4.068 11 C -0.126 4.126 12 C -0.049 4.049 13 C -0.570 4.570 14 H 0.047 0.953 15 C -0.194 4.194 16 N -0.593 5.593 17 Si 0.776 3.224 18 H -0.191 1.191 19 H -0.208 1.208 20 H -0.170 1.170 21 H 0.062 0.938 22 H 0.084 0.916 23 H 0.079 0.921 24 H 0.092 0.908 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.111 0.889 29 H 0.100 0.900 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.038 0.962 36 H 0.035 0.965 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.456 -11.392 -13.503 20.529 hybrid contribution 0.539 1.147 0.622 1.412 sum 10.995 -10.245 -12.881 19.794 Atomic orbital electron populations 1.21892 0.94515 1.02020 1.01496 1.22705 0.95876 0.95509 0.89720 0.94213 1.22407 0.96359 0.98576 0.93818 0.89572 1.21702 1.02149 0.98950 0.96757 1.22830 0.96750 1.02425 0.94944 1.22883 0.90889 0.99480 0.95790 1.63550 1.29603 1.26355 1.06965 1.22251 0.96276 0.93864 0.94364 1.21427 0.97063 0.96911 0.97192 1.19514 0.95175 0.94996 0.95173 1.21485 0.99453 1.24372 1.11739 0.95262 1.26052 0.99715 0.94673 0.98944 1.70077 1.30853 1.28958 1.29420 0.85618 0.79318 0.79921 0.77557 1.19084 1.20788 1.17014 0.93816 0.91598 0.92103 0.90848 0.92281 0.93224 0.91465 0.88933 0.90018 0.92676 0.90873 0.95086 0.93397 0.93274 0.96201 0.96527 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.06 9.17 71.98 0.66 -3.40 16 2 C 0.07 1.92 1.90 45.55 0.09 2.00 16 3 H 0.04 1.21 7.28 -2.39 -0.02 1.19 16 4 C -0.09 -1.88 3.07 -9.24 -0.03 -1.91 16 5 H 0.09 1.70 8.06 -2.39 -0.02 1.68 16 6 C -0.14 -2.36 9.31 71.98 0.67 -1.69 16 7 C -0.13 -2.41 6.40 31.78 0.20 -2.21 16 8 C 0.04 0.84 6.90 86.65 0.60 1.44 16 9 N -0.54 -15.85 4.94 -859.71 -4.25 -20.10 16 10 C 0.06 2.03 4.58 86.30 0.40 2.42 16 11 C -0.09 -3.66 3.65 30.59 0.11 -3.55 16 12 C -0.01 -0.52 4.04 29.85 0.12 -0.40 16 13 C -0.53 -31.93 9.66 25.60 0.25 -31.69 16 14 H 0.03 1.93 7.99 -2.91 -0.02 1.91 16 15 C 0.00 0.16 5.47 84.65 0.46 0.62 16 16 N -0.95 -61.21 13.96 21.45 0.30 -60.91 16 17 Si 0.95 45.28 27.47 68.60 1.88 47.16 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 19 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 20 H -0.25 -10.89 6.54 99.48 0.65 -10.24 16 21 H 0.04 1.51 5.18 -2.39 -0.01 1.50 16 22 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 23 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 24 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.05 0.90 8.11 -2.39 -0.02 0.88 16 27 H 0.07 1.22 8.04 -2.39 -0.02 1.20 16 28 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.08 1.71 8.14 -2.39 -0.02 1.70 16 30 H 0.05 1.22 7.58 -2.38 -0.02 1.20 16 31 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.03 1.01 8.13 -2.39 -0.02 0.99 16 33 H 0.05 2.03 6.07 -2.39 -0.01 2.02 16 34 H 0.05 2.15 7.57 -2.39 -0.02 2.14 16 35 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 36 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 37 H 0.27 15.89 8.31 -92.70 -0.77 15.12 16 Total: -1.00 -66.49 285.36 2.40 -64.08 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: 0.94 Total: 8.11 kcal Atomic # 6 Polarization: -41.88 SS G_CDS: 3.53 Total: -38.35 kcal Atomic # 7 Polarization: -77.05 SS G_CDS: -3.95 Total: -81.00 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.88 Total: 47.16 kcal Total: -66.49 2.40 -64.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308100205.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.853 kcal (2) G-P(sol) polarization free energy of solvation -66.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds