Wall clock time and date at job start Sun Mar 29 2020 21:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47421 * 2 1 4 4 N 1.46899 * 109.46911 * 119.99370 * 2 1 3 5 5 C 1.46904 * 111.00422 * 183.15804 * 4 2 1 6 6 C 1.46905 * 111.00091 * 307.11565 * 4 2 1 7 7 C 1.53004 * 109.47219 * 169.99591 * 6 4 2 8 8 C 1.50697 * 109.47251 * 179.97438 * 7 6 4 9 9 H 1.08002 * 120.00007 * 0.02562 * 8 7 6 10 10 C 1.37872 * 120.00110 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99985 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 120.00163 * 0.02562 * 10 8 7 13 13 H 1.48504 * 109.47100 * 89.99706 * 12 10 8 14 14 H 1.48497 * 109.47404 * 209.99825 * 12 10 8 15 15 H 1.48500 * 109.46970 * 329.99944 * 12 10 8 16 16 C 1.52993 * 109.47441 * 239.99281 * 2 1 3 17 17 C 1.52996 * 115.55311 * 280.48780 * 16 2 1 18 18 C 1.53002 * 117.49692 * 134.77929 * 16 2 1 19 19 C 1.52997 * 117.49880 * 66.15840 * 16 2 1 20 20 H 1.08999 * 109.46975 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47348 * 300.00500 * 1 2 3 22 22 H 1.09006 * 109.46782 * 60.00489 * 1 2 3 23 23 H 1.09000 * 109.46819 * 66.18644 * 5 4 2 24 24 H 1.08997 * 109.47370 * 186.18666 * 5 4 2 25 25 H 1.08999 * 109.46997 * 306.18681 * 5 4 2 26 26 H 1.08994 * 109.47184 * 289.99694 * 6 4 2 27 27 H 1.09001 * 109.46985 * 49.99989 * 6 4 2 28 28 H 1.08995 * 109.47563 * 300.00442 * 7 6 4 29 29 H 1.09006 * 109.46454 * 59.99966 * 7 6 4 30 30 H 0.97003 * 120.00114 * 180.02562 * 11 10 8 31 31 H 1.09000 * 109.47446 * 65.88530 * 17 16 2 32 32 H 1.09002 * 109.47455 * 185.88307 * 17 16 2 33 33 H 1.09000 * 109.47106 * 305.88523 * 17 16 2 34 34 H 1.09001 * 117.50076 * 359.97438 * 18 16 2 35 35 H 1.09004 * 117.49847 * 145.02743 * 18 16 2 36 36 H 1.09002 * 117.50212 * 214.98390 * 19 16 2 37 37 H 1.09006 * 117.49964 * 359.97438 * 19 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 3.4862 -0.6470 1.2720 6 6 1.4148 -0.1312 2.4150 7 6 1.7481 -1.0262 3.6104 8 6 1.1283 -0.4502 4.8574 9 1 0.5537 0.4626 4.8028 10 6 1.2938 -1.0891 6.0679 11 7 0.7524 -0.5867 7.1561 12 14 2.2871 -2.6684 6.1624 13 1 3.7124 -2.3419 6.4217 14 1 1.7651 -3.5163 7.2642 15 1 2.1733 -3.4023 4.8765 16 6 2.0401 -0.7214 -1.2491 17 6 2.0232 -2.2497 -1.1816 18 6 3.1769 -0.0608 -2.0316 19 6 1.7584 -0.0710 -2.6050 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 3.8109 0.3831 1.4191 24 1 3.8278 -1.2584 2.1071 25 1 3.9079 -1.0318 0.3435 26 1 1.8103 0.8695 2.5889 27 1 0.3332 -0.0781 2.2914 28 1 1.3528 -2.0269 3.4366 29 1 2.8299 -1.0793 3.7340 30 1 0.8692 -1.0360 8.0078 31 1 0.9923 -2.5998 -1.1285 32 1 2.5000 -2.6581 -2.0727 33 1 2.5653 -2.5803 -0.2956 34 1 3.5611 0.8879 -1.6568 35 1 3.9131 -0.7152 -2.4985 36 1 1.5614 -0.7319 -3.4490 37 1 1.2093 0.8707 -2.6072 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308100261.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:58 Heat of formation + Delta-G solvation = 1.358535 kcal Electronic energy + Delta-G solvation = -14584.790334 eV Core-core repulsion = 12361.962230 eV Total energy + Delta-G solvation = -2222.828104 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.32955 -37.45911 -35.03403 -32.48530 -31.27999 -29.26212 -27.35287 -25.60661 -23.69415 -23.13617 -21.38434 -19.50664 -18.90803 -16.98138 -16.53472 -16.24252 -15.68500 -15.45824 -14.96353 -14.55977 -14.27151 -13.96043 -13.49269 -13.27994 -13.02464 -12.91248 -12.83103 -12.59563 -12.39569 -12.18937 -11.99043 -11.78757 -11.69385 -11.46624 -11.29499 -10.86574 -10.74912 -10.43319 -9.16714 -8.30179 -6.34149 1.35257 1.37831 1.51226 2.36421 2.82370 3.05482 3.12060 3.77583 3.98781 4.06619 4.19168 4.31739 4.35306 4.47277 4.50301 4.68553 4.74726 4.81268 4.86366 4.91597 5.00092 5.03961 5.07657 5.10257 5.11981 5.28906 5.31822 5.34135 5.40822 5.48763 5.58530 5.64367 6.17016 6.29983 6.35254 6.73583 7.30658 8.86628 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.050582 B = 0.007074 C = 0.006696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.421637 B = 3957.368987 C = 4180.330944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.116 3.884 3 H 0.029 0.971 4 N -0.538 5.538 5 C 0.027 3.973 6 C 0.077 3.923 7 C 0.002 3.998 8 C -0.533 4.533 9 H 0.031 0.969 10 C 0.007 3.993 11 N -0.951 5.951 12 Si 0.951 3.049 13 H -0.267 1.267 14 H -0.282 1.282 15 H -0.248 1.248 16 C -0.124 4.124 17 C -0.100 4.100 18 C -0.176 4.176 19 C -0.161 4.161 20 H 0.059 0.941 21 H 0.045 0.955 22 H 0.076 0.924 23 H 0.016 0.984 24 H 0.057 0.943 25 H 0.087 0.913 26 H 0.010 0.990 27 H 0.070 0.930 28 H 0.021 0.979 29 H 0.016 0.984 30 H 0.267 0.733 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.624 -1.858 -19.870 20.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.008 3.992 3 H 0.047 0.953 4 N -0.262 5.262 5 C -0.121 4.121 6 C -0.051 4.051 7 C -0.036 4.036 8 C -0.571 4.571 9 H 0.049 0.951 10 C -0.190 4.190 11 N -0.592 5.592 12 Si 0.774 3.226 13 H -0.192 1.192 14 H -0.208 1.208 15 H -0.172 1.172 16 C -0.124 4.124 17 C -0.157 4.157 18 C -0.213 4.213 19 C -0.199 4.199 20 H 0.078 0.922 21 H 0.064 0.936 22 H 0.095 0.905 23 H 0.035 0.965 24 H 0.076 0.924 25 H 0.105 0.895 26 H 0.029 0.971 27 H 0.088 0.912 28 H 0.039 0.961 29 H 0.034 0.966 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.457 -2.370 -19.730 20.366 hybrid contribution 0.393 0.639 0.936 1.199 sum 4.850 -1.731 -18.794 19.487 Atomic orbital electron populations 1.21882 0.94056 1.02474 1.01671 1.21137 0.95573 0.93790 0.88702 0.95315 1.62042 1.06997 1.55463 1.01723 1.22399 0.87621 0.99361 1.02736 1.21948 0.99160 0.94907 0.89049 1.19415 0.95894 0.96069 0.92193 1.21427 1.32888 1.09736 0.93069 0.95083 1.25965 0.96610 1.01370 0.95035 1.70066 1.47019 1.42168 0.99908 0.85646 0.78959 0.79272 0.78718 1.19160 1.20797 1.17163 1.21354 1.03936 0.95698 0.91410 1.21135 1.01670 0.91364 1.01493 1.23164 0.92032 1.02264 1.03854 1.23066 0.98499 1.02581 0.95724 0.92166 0.93568 0.90513 0.96544 0.92414 0.89491 0.97138 0.91192 0.96072 0.96604 0.92445 0.92981 0.91962 0.92499 0.89527 0.87805 0.87487 0.88709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 8.64 71.98 0.62 -3.24 16 2 C 0.12 3.24 2.07 44.91 0.09 3.34 16 3 H 0.03 0.84 7.95 -2.39 -0.02 0.82 16 4 N -0.54 -18.23 3.76 -897.04 -3.37 -21.60 16 5 C 0.03 0.83 8.61 127.69 1.10 1.93 16 6 C 0.08 3.20 4.59 86.30 0.40 3.60 16 7 C 0.00 0.10 3.96 29.85 0.12 0.22 16 8 C -0.53 -31.66 9.66 25.60 0.25 -31.42 16 9 H 0.03 2.02 7.99 -2.91 -0.02 1.99 16 10 C 0.01 0.42 5.47 84.65 0.46 0.88 16 11 N -0.95 -60.70 13.96 21.45 0.30 -60.40 16 12 Si 0.95 45.47 27.47 68.60 1.88 47.36 16 13 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 14 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 15 H -0.25 -11.20 6.54 99.48 0.65 -10.55 16 16 C -0.12 -2.75 0.83 -52.19 -0.04 -2.80 16 17 C -0.10 -2.23 9.21 71.98 0.66 -1.57 16 18 C -0.18 -3.29 9.25 30.59 0.28 -3.01 16 19 C -0.16 -2.84 9.56 30.59 0.29 -2.55 16 20 H 0.06 1.67 8.00 -2.39 -0.02 1.65 16 21 H 0.05 1.39 6.11 -2.39 -0.01 1.37 16 22 H 0.08 1.67 7.73 -2.38 -0.02 1.65 16 23 H 0.02 0.50 8.12 -2.39 -0.02 0.48 16 24 H 0.06 1.92 6.58 -2.39 -0.02 1.90 16 25 H 0.09 2.25 5.83 -2.39 -0.01 2.24 16 26 H 0.01 0.45 8.11 -2.39 -0.02 0.43 16 27 H 0.07 2.94 5.63 -2.39 -0.01 2.93 16 28 H 0.02 1.04 7.20 -2.39 -0.02 1.03 16 29 H 0.02 0.75 6.03 -2.38 -0.01 0.74 16 30 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 31 H 0.05 1.21 8.00 -2.39 -0.02 1.19 16 32 H 0.06 1.14 8.09 -2.39 -0.02 1.12 16 33 H 0.06 1.47 6.50 -2.39 -0.02 1.46 16 34 H 0.09 1.68 8.09 -2.39 -0.02 1.66 16 35 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.09 1.61 8.00 -2.38 -0.02 1.59 16 Total: -1.00 -65.20 286.34 4.00 -61.20 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 0.96 Total: 8.06 kcal Atomic # 6 Polarization: -38.85 SS G_CDS: 4.23 Total: -34.62 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -3.07 Total: -82.00 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.88 Total: 47.36 kcal Total: -65.20 4.00 -61.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308100261.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.561 kcal (2) G-P(sol) polarization free energy of solvation -65.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds