Wall clock time and date at job start Sun Mar 29 2020 21:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00270 * 2 1 4 4 H 1.48500 * 109.46971 * 270.00083 * 3 2 1 5 5 H 1.48505 * 109.46977 * 29.99620 * 3 2 1 6 6 H 1.48489 * 109.47457 * 149.99872 * 3 2 1 7 7 C 1.37878 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99695 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00161 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46923 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99858 * 180.02562 * 10 9 7 12 12 O 1.21353 * 119.99795 * 359.97438 * 11 10 9 13 13 C 1.49444 * 119.99750 * 180.27542 * 11 10 9 14 14 O 1.21343 * 120.00401 * 359.71858 * 13 11 10 15 15 N 1.34783 * 119.99829 * 179.72509 * 13 11 10 16 16 C 1.46498 * 119.99907 * 180.02562 * 15 13 11 17 17 C 1.53006 * 117.49400 * 223.74460 * 16 15 13 18 18 C 1.53006 * 117.49779 * 155.08822 * 16 15 13 19 19 H 0.97003 * 120.00172 * 0.02562 * 1 2 3 20 20 H 1.08992 * 109.47217 * 60.00007 * 9 7 2 21 21 H 1.08997 * 109.47150 * 299.99540 * 9 7 2 22 22 H 0.97000 * 119.99825 * 359.97438 * 10 9 7 23 23 H 0.97000 * 119.99712 * 359.97438 * 15 13 11 24 24 H 1.08994 * 115.55108 * 9.40970 * 16 15 13 25 25 H 1.08998 * 117.49988 * 359.97438 * 17 16 15 26 26 H 1.09002 * 117.49490 * 145.01963 * 17 16 15 27 27 H 1.09001 * 117.49281 * 214.97546 * 18 16 15 28 28 H 1.08998 * 117.49569 * 359.96664 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5606 -5.1051 0.0000 13 6 2.7249 -6.0193 0.0062 14 8 3.9179 -5.7976 0.0066 15 7 2.2756 -7.2900 0.0113 16 6 3.2276 -8.4035 0.0180 17 6 2.9428 -9.5818 -0.9156 18 6 2.7501 -9.7377 0.5950 19 1 -0.4850 0.8401 -0.0004 20 1 0.6247 -2.5571 -0.8896 21 1 0.6240 -2.5568 0.8903 22 1 3.1566 -3.4354 0.0002 23 1 1.3219 -7.4672 0.0113 24 1 4.2701 -8.1296 0.1792 25 1 2.0471 -9.5287 -1.5343 26 1 3.7983 -10.0834 -1.3681 27 1 3.4788 -10.3417 1.1356 28 1 1.7279 -9.7867 0.9701 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308184294.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:22 Heat of formation + Delta-G solvation = -75.936089 kcal Electronic energy + Delta-G solvation = -13379.452160 eV Core-core repulsion = 10816.180210 eV Total energy + Delta-G solvation = -2563.271951 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.65972 -39.70484 -38.12238 -36.39219 -34.49302 -33.75262 -29.75752 -26.55931 -24.33962 -23.27862 -22.41687 -21.53661 -20.03983 -18.31167 -18.03462 -17.01715 -16.95150 -16.72831 -15.86931 -15.47651 -15.27845 -14.88107 -14.08506 -13.92964 -13.75705 -13.01454 -12.76060 -12.73000 -12.59360 -12.39128 -12.22626 -11.53865 -11.49440 -10.85084 -10.69592 -10.07342 -9.91199 -8.32203 -6.48560 0.31759 1.33055 1.44755 1.45452 1.57626 2.10485 2.35985 2.75188 2.95499 3.03080 3.48093 3.74228 4.03349 4.05712 4.67603 4.77453 4.96986 5.02001 5.16084 5.21689 5.25055 5.29136 5.51053 5.76870 6.00195 6.50557 6.57909 6.80034 7.01424 7.24758 8.79579 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.082648 B = 0.005435 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 338.706834 B = 5150.873213 C = 5406.027800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.010 3.990 3 Si 0.984 3.016 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.260 1.260 7 C -0.563 4.563 8 H 0.080 0.920 9 C 0.263 3.737 10 N -0.675 5.675 11 C 0.490 3.510 12 O -0.562 6.562 13 C 0.522 3.478 14 O -0.541 6.541 15 N -0.662 5.662 16 C 0.040 3.960 17 C -0.178 4.178 18 C -0.167 4.167 19 H 0.271 0.729 20 H 0.004 0.996 21 H 0.005 0.995 22 H 0.413 0.587 23 H 0.419 0.581 24 H 0.132 0.868 25 H 0.102 0.898 26 H 0.120 0.880 27 H 0.124 0.876 28 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.442 -16.078 -0.046 17.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.191 4.191 3 Si 0.807 3.193 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.183 1.183 7 C -0.601 4.601 8 H 0.098 0.902 9 C 0.141 3.859 10 N -0.325 5.325 11 C 0.270 3.730 12 O -0.442 6.442 13 C 0.302 3.698 14 O -0.418 6.418 15 N -0.314 5.314 16 C -0.065 4.065 17 C -0.216 4.216 18 C -0.204 4.204 19 H 0.080 0.920 20 H 0.022 0.978 21 H 0.023 0.977 22 H 0.249 0.751 23 H 0.257 0.743 24 H 0.150 0.850 25 H 0.120 0.880 26 H 0.139 0.861 27 H 0.142 0.858 28 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.288 -15.935 -0.039 17.131 hybrid contribution -0.135 0.964 -0.029 0.974 sum 6.153 -14.971 -0.068 16.187 Atomic orbital electron populations 1.70103 1.08007 1.28761 1.49512 1.25986 0.95829 1.03629 0.93635 0.85165 0.78440 0.77036 0.78661 1.19539 1.20571 1.18350 1.21575 0.94284 0.90588 1.53605 0.90235 1.18827 0.88364 0.83219 0.95509 1.46169 1.12373 1.05007 1.68908 1.20451 0.88584 0.85062 0.78896 1.90696 1.17297 1.85136 1.51079 1.19897 0.87885 0.84549 0.77421 1.90707 1.16610 1.85004 1.49468 1.45115 1.11492 1.03616 1.71142 1.21932 0.94461 0.81659 1.08420 1.23562 1.04937 0.99506 0.93621 1.23532 1.04150 0.96334 0.96424 0.92015 0.97784 0.97748 0.75107 0.74339 0.85033 0.87996 0.86135 0.85763 0.87548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.78 13.29 21.45 0.28 -54.49 15 2 C 0.01 0.53 5.46 84.65 0.46 0.99 15 3 Si 0.98 42.49 29.54 68.60 2.03 44.51 15 4 H -0.27 -11.28 7.11 99.48 0.71 -10.57 15 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 15 6 H -0.26 -10.64 7.11 99.48 0.71 -9.93 15 7 C -0.56 -30.94 9.28 25.60 0.24 -30.70 15 8 H 0.08 4.07 7.60 -2.91 -0.02 4.04 15 9 C 0.26 14.30 5.43 85.63 0.46 14.77 15 10 N -0.67 -30.43 5.54 -468.15 -2.59 -33.03 15 11 C 0.49 20.43 7.89 87.27 0.69 21.12 15 12 O -0.56 -25.91 16.48 -3.26 -0.05 -25.96 15 13 C 0.52 17.95 7.89 87.27 0.69 18.64 15 14 O -0.54 -20.13 16.04 -3.23 -0.05 -20.18 15 15 N -0.66 -17.36 5.56 -443.86 -2.47 -19.83 15 16 C 0.04 0.80 6.43 45.00 0.29 1.09 15 17 C -0.18 -2.50 10.46 30.62 0.32 -2.18 15 18 C -0.17 -2.18 10.46 30.62 0.32 -1.86 15 19 H 0.27 14.92 8.31 -92.71 -0.77 14.15 15 20 H 0.00 0.25 8.14 -2.39 -0.02 0.23 15 21 H 0.00 0.27 8.14 -2.39 -0.02 0.25 15 22 H 0.41 17.10 7.79 -92.71 -0.72 16.38 15 23 H 0.42 10.05 8.30 -92.71 -0.77 9.28 15 24 H 0.13 2.89 7.40 -2.39 -0.02 2.88 15 25 H 0.10 1.42 8.14 -2.39 -0.02 1.40 15 26 H 0.12 1.31 8.14 -2.39 -0.02 1.29 15 27 H 0.12 1.19 8.14 -2.39 -0.02 1.17 15 28 H 0.11 1.30 8.14 -2.39 -0.02 1.28 15 Total: -1.00 -66.72 259.31 0.32 -66.41 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -0.30 Total: 20.71 kcal Atomic # 6 Polarization: 18.40 SS G_CDS: 3.47 Total: 21.87 kcal Atomic # 7 Polarization: -102.58 SS G_CDS: -4.78 Total: -107.35 kcal Atomic # 8 Polarization: -46.04 SS G_CDS: -0.11 Total: -46.14 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -66.72 0.32 -66.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308184294.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.528 kcal (2) G-P(sol) polarization free energy of solvation -66.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds