Wall clock time and date at job start Sun Mar 29 2020 21:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46837 * 2 1 4 4 C 1.53000 * 109.46931 * 240.00093 * 2 1 3 5 5 C 1.52998 * 109.46946 * 175.00274 * 4 2 1 6 6 C 1.53000 * 109.46946 * 180.02562 * 5 4 2 7 7 C 1.52999 * 117.49896 * 243.74333 * 6 5 4 8 8 C 1.53005 * 117.49860 * 175.08311 * 6 5 4 9 9 N 1.46901 * 109.47021 * 120.00193 * 2 1 3 10 10 C 1.46905 * 110.99870 * 274.99736 * 9 2 1 11 11 C 1.52993 * 109.47039 * 180.02562 * 10 9 2 12 12 C 1.50698 * 109.47393 * 180.02562 * 11 10 9 13 13 H 1.08010 * 119.99765 * 359.97438 * 12 11 10 14 14 C 1.37872 * 120.00736 * 179.97438 * 12 11 10 15 15 N 1.31509 * 120.00590 * 179.97438 * 14 12 11 16 16 Si 1.86807 * 119.99710 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47209 * 89.99893 * 16 14 12 18 18 H 1.48500 * 109.47295 * 209.99804 * 16 14 12 19 19 H 1.48503 * 109.47210 * 329.99849 * 16 14 12 20 20 H 1.08996 * 109.47234 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.47106 * 300.00284 * 1 2 3 22 22 H 1.08993 * 109.47190 * 59.99909 * 1 2 3 23 23 H 1.09000 * 109.46957 * 294.99682 * 4 2 1 24 24 H 1.08999 * 109.47080 * 55.00118 * 4 2 1 25 25 H 1.09000 * 109.46809 * 299.99498 * 5 4 2 26 26 H 1.08999 * 109.47359 * 60.00014 * 5 4 2 27 27 H 1.08997 * 115.55125 * 29.41759 * 6 5 4 28 28 H 1.09007 * 117.49611 * 0.02562 * 7 6 5 29 29 H 1.09004 * 117.50213 * 145.01882 * 7 6 5 30 30 H 1.08998 * 117.49843 * 214.97599 * 8 6 5 31 31 H 1.09004 * 117.49687 * 0.02562 * 8 6 5 32 32 H 1.00901 * 111.00067 * 38.94911 * 9 2 1 33 33 H 1.09001 * 109.46798 * 300.00327 * 10 9 2 34 34 H 1.08998 * 109.46961 * 60.00043 * 10 9 2 35 35 H 1.09001 * 109.47393 * 299.99719 * 11 10 9 36 36 H 1.08998 * 109.47408 * 60.00073 * 11 10 9 37 37 H 0.97002 * 120.00416 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 6 4.0747 -1.3340 -2.5633 7 6 4.9740 -2.5546 -2.3574 8 6 5.5706 -1.2418 -2.8710 9 7 2.0197 -0.6925 1.1994 10 6 2.0825 0.2226 2.3469 11 6 2.5962 -0.5329 3.5741 12 6 2.6601 0.4056 4.7515 13 1 2.3643 1.4380 4.6358 14 6 3.0962 -0.0533 5.9762 15 7 3.1524 0.7658 7.0035 16 14 3.6085 -1.8386 6.1762 17 1 5.0592 -1.9725 5.8881 18 1 3.3378 -2.2784 7.5685 19 1 2.8360 -2.6841 5.2309 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.7516 -1.7715 -1.2056 24 1 1.6054 -0.2617 -2.1370 25 1 3.8531 0.4369 -1.3574 26 1 3.9994 -1.0729 -0.4260 27 1 3.3872 -1.3524 -3.4088 28 1 5.2020 -2.8444 -1.3315 29 1 4.8783 -3.3759 -3.0676 30 1 5.8672 -1.2000 -3.9191 31 1 6.1916 -0.6680 -2.1830 32 1 1.4495 -1.4979 1.4100 33 1 2.7589 1.0462 2.1182 34 1 1.0871 0.6163 2.5525 35 1 1.9202 -1.3567 3.8030 36 1 3.5917 -0.9263 3.3683 37 1 3.4588 0.4428 7.8653 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308222149.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:30 Heat of formation + Delta-G solvation = -5.212458 kcal Electronic energy + Delta-G solvation = -13841.154212 eV Core-core repulsion = 11618.041168 eV Total energy + Delta-G solvation = -2223.113044 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.07314 -36.77330 -33.59945 -31.96444 -29.97281 -28.18093 -24.50672 -23.46326 -22.37638 -20.65830 -20.25305 -20.01329 -16.78386 -15.73193 -15.09366 -14.75349 -14.55072 -14.09159 -13.70282 -13.22879 -12.84831 -12.62277 -12.44716 -11.93689 -11.61565 -11.51281 -11.33640 -11.14891 -10.98814 -10.88298 -10.59187 -10.24152 -10.03176 -9.78079 -9.76323 -9.61214 -9.20142 -8.51831 -7.83205 -6.02612 -4.00731 3.34136 3.40844 3.45845 3.81140 4.47910 4.62745 4.68588 4.93600 4.96890 5.15793 5.24733 5.32150 5.46988 5.48929 5.59215 5.61059 5.79680 5.85767 5.97162 6.01034 6.08962 6.11089 6.14732 6.22833 6.29353 6.43629 6.44976 6.64786 6.82209 7.19381 7.42801 7.66680 7.80893 7.97207 8.55548 9.01696 9.60064 11.10830 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.028919 B = 0.006270 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.980284 B = 4464.554494 C = 5073.932909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.079 3.921 3 H 0.074 0.926 4 C -0.100 4.100 5 C -0.084 4.084 6 C -0.149 4.149 7 C -0.182 4.182 8 C -0.186 4.186 9 N -0.687 5.687 10 C 0.074 3.926 11 C -0.010 4.010 12 C -0.520 4.520 13 H 0.070 0.930 14 C 0.067 3.933 15 N -0.905 5.905 16 Si 0.882 3.118 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.265 1.265 20 H 0.054 0.946 21 H 0.056 0.944 22 H 0.054 0.946 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.334 0.666 33 H 0.062 0.938 34 H 0.021 0.979 35 H 0.012 0.988 36 H 0.020 0.980 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.872 -4.791 -18.474 19.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.031 4.031 3 H 0.092 0.908 4 C -0.138 4.138 5 C -0.121 4.121 6 C -0.167 4.167 7 C -0.219 4.219 8 C -0.223 4.223 9 N -0.317 5.317 10 C -0.055 4.055 11 C -0.048 4.048 12 C -0.559 4.559 13 H 0.088 0.912 14 C -0.134 4.134 15 N -0.544 5.544 16 Si 0.710 3.290 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.190 1.190 20 H 0.073 0.927 21 H 0.075 0.925 22 H 0.073 0.927 23 H 0.078 0.922 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.099 0.901 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.112 0.888 32 H 0.152 0.848 33 H 0.081 0.919 34 H 0.039 0.961 35 H 0.030 0.970 36 H 0.038 0.962 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.154 -4.689 -18.441 19.028 hybrid contribution -0.676 -0.764 0.461 1.120 sum -0.830 -5.454 -17.979 18.807 Atomic orbital electron populations 1.22501 0.97897 1.01763 1.01872 1.21591 0.91990 0.98180 0.91371 0.90811 1.21519 0.95508 1.00510 0.96233 1.21112 0.95554 0.99634 0.95813 1.22422 0.92596 1.01363 1.00368 1.23034 1.04889 0.91555 1.02434 1.22958 0.96581 1.01346 1.01457 1.60710 1.56462 1.10166 1.04408 1.21961 0.98637 0.95090 0.89769 1.19541 0.96315 0.96183 0.92731 1.21088 1.44164 0.97752 0.92896 0.91171 1.25005 0.95032 0.97580 0.95804 1.69915 1.47883 1.35345 1.01253 0.86737 0.79393 0.85791 0.77101 1.20269 1.21526 1.18990 0.92738 0.92521 0.92668 0.92156 0.92595 0.92316 0.90051 0.88483 0.88567 0.89435 0.89370 0.88817 0.84846 0.91932 0.96088 0.96952 0.96179 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.24 9.16 37.16 0.34 -1.90 16 2 C 0.08 1.08 2.59 -67.71 -0.18 0.91 16 3 H 0.07 1.06 7.80 -51.93 -0.40 0.66 16 4 C -0.10 -1.18 4.85 -26.73 -0.13 -1.31 16 5 C -0.08 -1.04 5.38 -26.73 -0.14 -1.18 16 6 C -0.15 -1.62 5.73 -90.62 -0.52 -2.14 16 7 C -0.18 -1.93 10.18 -26.69 -0.27 -2.20 16 8 C -0.19 -1.91 10.26 -26.69 -0.27 -2.19 16 9 N -0.69 -11.42 5.70 -106.72 -0.61 -12.03 16 10 C 0.07 1.49 5.42 -3.82 -0.02 1.47 16 11 C -0.01 -0.24 4.30 -27.89 -0.12 -0.36 16 12 C -0.52 -15.08 9.66 -34.44 -0.33 -15.41 16 13 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 14 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 15 N -0.90 -28.27 13.96 55.43 0.77 -27.49 16 16 Si 0.88 22.16 27.47 -169.99 -4.67 17.49 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 20 H 0.05 0.64 8.13 -51.93 -0.42 0.21 16 21 H 0.06 0.77 7.45 -51.92 -0.39 0.38 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.08 1.18 7.49 -51.93 -0.39 0.79 16 27 H 0.10 0.97 8.08 -51.93 -0.42 0.55 16 28 H 0.10 1.09 8.03 -51.93 -0.42 0.67 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.33 5.36 8.47 -39.29 -0.33 5.03 16 33 H 0.06 1.30 8.06 -51.93 -0.42 0.89 16 34 H 0.02 0.43 7.44 -51.93 -0.39 0.04 16 35 H 0.01 0.30 7.20 -51.93 -0.37 -0.08 16 36 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 299.89 15.07 4.52 4.52 Total: -1.00 -29.98 299.89 -8.62 -38.60 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.89 Total: 1.35 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: -1.74 Total: -22.44 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.16 Total: -39.52 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.67 Total: 17.49 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.98 -8.62 -38.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308222149.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.384 kcal (2) G-P(sol) polarization free energy of solvation -29.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds