Wall clock time and date at job start Sun Mar 29 2020 21:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00004 * 2 1 4 4 H 1.48496 * 109.47138 * 270.00527 * 3 2 1 5 5 H 1.48504 * 109.46923 * 30.00322 * 3 2 1 6 6 H 1.48497 * 109.46933 * 150.00138 * 3 2 1 7 7 C 1.37879 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99977 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00016 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46784 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.46844 * 179.97438 * 10 9 7 12 12 C 1.34433 * 126.81991 * 124.99544 * 11 10 9 13 13 N 1.30830 * 108.07650 * 179.76705 * 12 11 10 14 14 C 1.33243 * 109.82982 * 0.23545 * 13 12 11 15 15 N 1.48027 * 125.52799 * 180.02562 * 14 13 12 16 16 O 1.21796 * 119.99849 * 359.97438 * 15 14 13 17 17 O 1.21796 * 119.99583 * 179.97438 * 15 14 13 18 18 N 1.30708 * 108.94488 * 359.97438 * 14 13 12 19 19 H 0.96992 * 119.99966 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.47012 * 60.00856 * 9 7 2 21 21 H 1.08995 * 109.47194 * 300.00457 * 9 7 2 22 22 H 1.08998 * 109.47378 * 59.99910 * 10 9 7 23 23 H 1.09005 * 109.47219 * 299.99924 * 10 9 7 24 24 H 1.08002 * 125.96533 * 0.04205 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9308 0.0001 12 6 1.6442 -5.9374 -0.8813 13 7 0.8197 -6.8917 -0.5334 14 6 0.1444 -6.5305 0.5570 15 7 -0.8781 -7.3495 1.2462 16 8 -1.1624 -8.4542 0.8195 17 8 -1.4349 -6.9185 2.2400 18 7 0.5321 -5.3362 0.9200 19 1 -0.4850 0.8400 0.0004 20 1 0.6241 -2.5568 -0.8904 21 1 0.6247 -2.5571 0.8896 22 1 2.8720 -3.6044 0.8894 23 1 2.8720 -3.6044 -0.8906 24 1 2.3166 -5.9569 -1.7262 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308387931.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:50 Heat of formation + Delta-G solvation = 90.574986 kcal Electronic energy + Delta-G solvation = -13287.650277 eV Core-core repulsion = 10628.058445 eV Total energy + Delta-G solvation = -2659.591832 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.070 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.78233 -41.77877 -36.62280 -35.27309 -33.01026 -31.91223 -30.22547 -27.50208 -25.23917 -22.79669 -22.16844 -21.08485 -19.04583 -18.65754 -17.82603 -17.03721 -15.92381 -15.79353 -15.05163 -14.65214 -13.85655 -12.85484 -12.37861 -11.93428 -11.65781 -11.48921 -11.24094 -11.17144 -11.07011 -10.62668 -10.55949 -10.32522 -10.25499 -9.65934 -9.53037 -8.65618 -6.29240 -4.37534 0.07619 0.65695 1.43977 2.29332 2.48963 3.15334 3.23053 3.24723 3.96805 4.22676 4.42274 5.06816 5.08587 5.31371 5.61025 5.70652 6.06374 6.24139 6.44498 7.14067 7.23786 7.31466 7.62967 7.82070 7.93938 8.67508 9.29383 10.81582 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.058654 B = 0.006288 C = 0.005855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.262078 B = 4451.694379 C = 4781.477774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.062 0.938 9 C 0.012 3.988 10 C 0.117 3.883 11 N -0.322 5.322 12 C 0.269 3.731 13 N -0.506 5.506 14 C 0.252 3.748 15 N 0.068 4.932 16 O -0.110 6.110 17 O -0.117 6.117 18 N -0.206 5.206 19 H 0.266 0.734 20 H 0.025 0.975 21 H 0.037 0.963 22 H 0.094 0.906 23 H 0.108 0.892 24 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.801 -8.738 -1.868 10.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.141 4.141 3 Si 0.729 3.271 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.575 4.575 8 H 0.081 0.919 9 C -0.025 4.025 10 C -0.001 4.001 11 N -0.116 5.116 12 C -0.027 4.027 13 N -0.238 5.238 14 C -0.107 4.107 15 N 0.598 4.402 16 O -0.331 6.331 17 O -0.335 6.335 18 N -0.048 5.048 19 H 0.076 0.924 20 H 0.043 0.957 21 H 0.055 0.945 22 H 0.112 0.888 23 H 0.126 0.874 24 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 4.832 -8.117 -1.735 9.605 hybrid contribution 0.371 0.916 -0.110 0.995 sum 5.203 -7.201 -1.846 9.073 Atomic orbital electron populations 1.69962 1.06233 1.27413 1.48588 1.25020 0.94913 0.99662 0.94464 0.86437 0.79718 0.82670 0.78282 1.20416 1.20944 1.19641 1.20894 0.93057 0.89889 1.53659 0.91950 1.19455 0.93850 0.89876 0.99362 1.22925 0.95273 0.77743 1.04183 1.51457 1.25941 1.16809 1.17397 1.26245 0.97383 0.82580 0.96518 1.69920 1.10520 1.30613 1.12750 1.23897 0.98964 0.91440 0.96399 1.41686 0.98740 0.99988 0.99764 1.94591 1.65873 1.03926 1.68720 1.94646 1.50270 1.75629 1.13004 1.78278 1.04088 1.09426 1.12983 0.92412 0.95709 0.94478 0.88782 0.87425 0.74269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.06 13.29 55.43 0.74 -24.33 14 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 14 3 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 14 4 H -0.28 -6.04 7.11 56.52 0.40 -5.64 14 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 14 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 14 7 C -0.54 -13.34 9.11 -34.44 -0.31 -13.66 14 8 H 0.06 1.44 7.74 -52.49 -0.41 1.03 14 9 C 0.01 0.28 5.18 -27.88 -0.14 0.14 14 10 C 0.12 1.88 6.49 -4.04 -0.03 1.86 14 11 N -0.32 -5.19 3.69 -62.63 -0.23 -5.42 14 12 C 0.27 3.49 12.63 -90.65 -1.14 2.34 14 13 N -0.51 -8.24 11.15 -12.81 -0.14 -8.39 14 14 C 0.25 4.64 9.01 -308.63 -2.78 1.86 14 15 N 0.07 1.24 4.45 31.81 0.14 1.39 14 16 O -0.11 -1.92 19.23 -29.46 -0.57 -2.49 14 17 O -0.12 -2.16 19.22 -29.46 -0.57 -2.73 14 18 N -0.21 -3.96 12.52 31.75 0.40 -3.56 14 19 H 0.27 7.13 8.31 -40.82 -0.34 6.79 14 20 H 0.02 0.61 8.14 -51.93 -0.42 0.19 14 21 H 0.04 0.96 8.14 -51.93 -0.42 0.54 14 22 H 0.09 1.44 8.14 -51.93 -0.42 1.02 14 23 H 0.11 1.35 8.09 -51.93 -0.42 0.93 14 24 H 0.24 1.62 8.06 -52.49 -0.42 1.20 14 LS Contribution 238.92 15.07 3.60 3.60 Total: -1.00 -30.41 238.92 -7.81 -38.22 By element: Atomic # 1 Polarization: -3.63 SS G_CDS: -1.65 Total: -5.28 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -4.51 Total: -5.90 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 0.90 Total: -40.30 kcal Atomic # 8 Polarization: -4.08 SS G_CDS: -1.13 Total: -5.21 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -30.41 -7.81 -38.22 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308387931.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.791 kcal (2) G-P(sol) polarization free energy of solvation -30.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds