Wall clock time and date at job start Sun Mar 29 2020 21:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00004 * 2 1 4 4 H 1.48496 * 109.47138 * 270.00527 * 3 2 1 5 5 H 1.48504 * 109.46923 * 30.00322 * 3 2 1 6 6 H 1.48497 * 109.46933 * 150.00138 * 3 2 1 7 7 C 1.37879 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99977 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00016 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46784 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.46844 * 179.97438 * 10 9 7 12 12 C 1.34433 * 126.81991 * 124.99544 * 11 10 9 13 13 N 1.30830 * 108.07650 * 179.76705 * 12 11 10 14 14 C 1.33243 * 109.82982 * 0.23545 * 13 12 11 15 15 N 1.48027 * 125.52799 * 180.02562 * 14 13 12 16 16 O 1.21796 * 119.99849 * 359.97438 * 15 14 13 17 17 O 1.21796 * 119.99583 * 179.97438 * 15 14 13 18 18 N 1.30708 * 108.94488 * 359.97438 * 14 13 12 19 19 H 0.96992 * 119.99966 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.47012 * 60.00856 * 9 7 2 21 21 H 1.08995 * 109.47194 * 300.00457 * 9 7 2 22 22 H 1.08998 * 109.47378 * 59.99910 * 10 9 7 23 23 H 1.09005 * 109.47219 * 299.99924 * 10 9 7 24 24 H 1.08002 * 125.96533 * 0.04205 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9308 0.0001 12 6 1.6442 -5.9374 -0.8813 13 7 0.8197 -6.8917 -0.5334 14 6 0.1444 -6.5305 0.5570 15 7 -0.8781 -7.3495 1.2462 16 8 -1.1624 -8.4542 0.8195 17 8 -1.4349 -6.9185 2.2400 18 7 0.5321 -5.3362 0.9200 19 1 -0.4850 0.8400 0.0004 20 1 0.6241 -2.5568 -0.8904 21 1 0.6247 -2.5571 0.8896 22 1 2.8720 -3.6044 0.8894 23 1 2.8720 -3.6044 -0.8906 24 1 2.3166 -5.9569 -1.7262 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308387931.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:50 Heat of formation + Delta-G solvation = 74.065617 kcal Electronic energy + Delta-G solvation = -13288.366177 eV Core-core repulsion = 10628.058445 eV Total energy + Delta-G solvation = -2660.307732 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.070 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.07760 -43.15422 -38.04068 -36.75844 -34.78937 -33.19025 -31.85450 -29.00607 -26.86641 -24.25618 -23.49444 -22.59301 -20.38429 -20.06649 -19.24290 -18.76788 -17.37050 -17.16446 -16.47392 -16.16406 -15.29878 -14.49520 -13.86341 -13.65699 -13.08483 -13.00185 -12.84263 -12.76130 -12.59947 -12.28442 -11.96142 -11.82031 -11.61152 -11.42226 -11.08340 -10.63901 -8.27815 -6.41802 -1.32605 -0.69097 0.23357 1.08884 1.24377 1.43437 1.44899 1.55199 2.38035 2.80193 3.08813 3.37535 3.94386 4.06276 4.24024 4.49063 4.60490 4.85536 5.22170 5.33312 5.48652 5.71043 5.89784 6.01710 6.48264 6.76044 7.30464 8.84453 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.058654 B = 0.006288 C = 0.005855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.262078 B = 4451.694379 C = 4781.477774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.972 3.028 4 H -0.270 1.270 5 H -0.293 1.293 6 H -0.255 1.255 7 C -0.539 4.539 8 H 0.086 0.914 9 C 0.016 3.984 10 C 0.132 3.868 11 N -0.331 5.331 12 C 0.300 3.700 13 N -0.522 5.522 14 C 0.244 3.756 15 N 0.066 4.934 16 O -0.088 6.088 17 O -0.148 6.148 18 N -0.253 5.253 19 H 0.264 0.736 20 H -0.004 1.004 21 H -0.009 1.009 22 H 0.104 0.896 23 H 0.159 0.841 24 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.445 -9.021 -3.277 12.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.797 3.203 4 H -0.195 1.195 5 H -0.219 1.219 6 H -0.179 1.179 7 C -0.578 4.578 8 H 0.104 0.896 9 C -0.022 4.022 10 C 0.014 3.986 11 N -0.124 5.124 12 C 0.006 3.994 13 N -0.255 5.255 14 C -0.115 4.115 15 N 0.594 4.406 16 O -0.316 6.316 17 O -0.358 6.358 18 N -0.096 5.096 19 H 0.072 0.928 20 H 0.015 0.985 21 H 0.009 0.991 22 H 0.122 0.878 23 H 0.177 0.823 24 H 0.321 0.679 Dipole moment (debyes) X Y Z Total from point charges 7.485 -8.366 -3.090 11.643 hybrid contribution -0.434 0.904 0.245 1.032 sum 7.051 -7.462 -2.845 10.653 Atomic orbital electron populations 1.70130 1.08306 1.28071 1.50975 1.26049 0.95603 1.03917 0.94431 0.85331 0.78648 0.77814 0.78550 1.19543 1.21904 1.17868 1.21476 0.94342 0.90546 1.51412 0.89574 1.19229 0.94496 0.92687 0.95823 1.22753 0.93275 0.75311 1.07242 1.51372 1.25794 1.17519 1.17741 1.27585 0.95803 0.80068 0.95911 1.69983 1.11323 1.31937 1.12279 1.23955 0.99068 0.91393 0.97050 1.41768 0.98915 1.00109 0.99789 1.94555 1.65196 1.03736 1.68124 1.94650 1.51353 1.76004 1.13825 1.78196 1.05944 1.10210 1.15220 0.92779 0.98538 0.99081 0.87757 0.82304 0.67863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.45 13.29 21.45 0.28 -54.17 14 2 C 0.00 -0.07 5.46 84.65 0.46 0.39 14 3 Si 0.97 40.32 29.54 68.60 2.03 42.35 14 4 H -0.27 -10.76 7.11 99.48 0.71 -10.05 14 5 H -0.29 -12.46 7.11 99.48 0.71 -11.75 14 6 H -0.25 -9.78 7.11 99.48 0.71 -9.08 14 7 C -0.54 -26.22 9.11 25.60 0.23 -25.99 14 8 H 0.09 3.69 7.74 -2.91 -0.02 3.67 14 9 C 0.02 0.71 5.18 29.85 0.15 0.87 14 10 C 0.13 3.87 6.49 86.38 0.56 4.43 14 11 N -0.33 -9.89 3.69 -352.05 -1.30 -11.19 14 12 C 0.30 6.58 12.63 180.36 2.28 8.85 14 13 N -0.52 -15.77 11.15 -194.43 -2.17 -17.94 14 14 C 0.24 8.87 9.01 256.53 2.31 11.18 14 15 N 0.07 2.40 4.45 -53.26 -0.24 2.16 14 16 O -0.09 -3.03 19.23 18.89 0.36 -2.67 14 17 O -0.15 -5.65 19.22 18.89 0.36 -5.29 14 18 N -0.25 -9.75 12.52 -53.46 -0.67 -10.42 14 19 H 0.26 14.59 8.31 -92.71 -0.77 13.82 14 20 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 14 21 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 14 22 H 0.10 2.88 8.14 -2.39 -0.02 2.86 14 23 H 0.16 3.08 8.09 -2.38 -0.02 3.06 14 24 H 0.31 2.01 8.06 -2.91 -0.02 1.98 14 Total: -1.00 -69.52 238.92 5.89 -63.63 By element: Atomic # 1 Polarization: -7.44 SS G_CDS: 1.23 Total: -6.21 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 6.00 Total: -0.26 kcal Atomic # 7 Polarization: -87.46 SS G_CDS: -4.09 Total: -91.55 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.73 Total: -7.96 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.35 kcal Total: -69.52 5.89 -63.63 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308387931.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.694 kcal (2) G-P(sol) polarization free energy of solvation -69.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds